Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0015223

Physical Location & Seq

Genomic Coordinates Reverse (-)

52452819 .. 52454595

Gene Structure 1777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019473

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGAGTGCTTCTCTTCCTCCCTCCTCCGGTTGCTTCTTCTCTTCACCATCAGTACTTCATTTCTCAATGTTGATGCAACGTTTACTGGAACATATGGAGTAAACTATGGCAGGATAGCAGACAACATACCATCACCTCATAGTGTGGTGACACTTCTCAAAGCAGCGAAGATCAAGAACATCAGAATATATGATGCTGCACCTGAAGTCCTCACCGCCTTCAAGGGATCAGGAATCGAAATTGTTGTTGGACTTGGCAATGAGTTCCTTAAGGAAATCAGCATAGCCGAGGATCGCGCCACTACTTGGATCAAAGAGAAGGTCCAGCCATACCTACCAGGGACTCACATTTCCGGAATAGCAGTCGGGAATGAGATCTTGGGGGGGACTGATGTGGTACTCTGGGAGGTCTTGTTGCCTGCAGTGAAGAATGTGTATAGTGCTCTTGGCCAGCTTGGTTTGGCTAGCAGCATTGAGGTCTCAAGTCCACATTCTGAGGCTGTTTTTGCCAATTCTTACCCACCATCTGCTTGCATTTTTAGAGAAGATATCGCTGGTTACATGAAGCCACTTCTGGAGTTCTTTTCGCAGATTAAATCTCCGTTTTACATAAACGCATATCCTTTCCTTGCTTATAAGAGTGACCCTGAGCACATTAACCTCAACTATGCTCTATTCAAGTCAAATCCCGGAATTCTAGACACAAAGACTAATCTCCACTATGACAACATGTTTGATGCCATGGTTGATGCATCTTATTTTGCTTTGGAGAAGGCTGGATATGACAAGATGGAAGTCATAGTATCCGAAACTGGTTGGGCATCTAAGGGGGACCCAGATGAAGCAGGAGCAGATGCGAAAAATGCCAGGACTTACAACTTGAATTTGAAGAAAAGGCTGGCCAAGAAGAAGGGGACTCCTCATAGACCAAAGATGGTGGTGAAAGCTTATATTTTTGCTTTGTTCAATGAGAACTTGAAACCGGGGCCAACGTCTGAGAGGAATTTCGGATTGTTCAAAGCAGATGGGAGCATTTCATATGACATTGGGTTCACTGGACTTGTTGCACCAAATGCAGCATCCTCATCTCTTCTTAATTACAAGGGCATGGGATTTCGAGGTTGGTTTCAATCTTCGCATACCTGGGTTTTCACAAGTTGTGCTGCTGCTCTGCTTCTAATGTTATCGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

398

Amino Acids

43.45

Weight (kDa)

7.05

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	33 - 351	9.3e-84	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15800
fragaria_vesca	FvH4_6g29810
malus_domestica	MD00G1122900.v1.1 MD17G1210800.v1.1
prunus_persica	Prupe.3G086200_v2.0.a1
pyrus_communis	pycom09g14110 pycom17g21580
rosa_chinensis	RchiOBHm_Chr2g0135631
rosa_laevigata	RLG00000019473
rosa_multiflora	Rmu_sc0002398.1_g000035
rosa_roxburghii	Rroxscaffold_2G00109030
rosa_rugosa	Rorug02G0325300
rosa_samantha	Rh2AG376700 Rh2BG383000 Rh2DG399100
rosa_wichuraiana	Rw2G030720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	636
AccB7I	CCANNNNNTGG	1 cut(s)	306
AccII	CGCG	1 cut(s)	297
AccIII	TCCGGA	1 cut(s)	353
AciI	CCGC	1 cut(s)	216
AclI	AACGTT	1 cut(s)	80
AclWI	GGATC	3 cut(s)	235, 300, 317
AcoI	YGGCCR	2 cut(s)	448, 900
AcsI	RAATTY	3 cut(s)	693, 883, 1003
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	2 cut(s)	55, 399
AfiI	CCNNNNNNNGG	2 cut(s)	27, 306
AflII	CTTAAG	1 cut(s)	269
AflIII	ACRYGT	1 cut(s)	729
AgsI	TTSAA	8 cut(s)	223, 679, 883, 889, 967, 979, 1018, 1130
AjnI	CCWGG	3 cut(s)	337, 866, 1142
AjuI	GAANNNNNNNTTGG	4 cut(s)	231, 263, 362, 394
AluBI	AGCT	2 cut(s)	454, 947
AluI	AGCT	2 cut(s)	454, 947
Alw21I	GWGCWC	2 cut(s)	445, 654
Alw26I	GTCTC	1 cut(s)	484
AlwI	GGATC	3 cut(s)	235, 300, 317
Aor13HI	TCCGGA	1 cut(s)	353
AoxI	GGCC	3 cut(s)	448, 900, 986
ApeKI	GCWGC	6 cut(s)	164, 197, 468, 1076, 1163, 1166
ApoI	RAATTY	3 cut(s)	693, 883, 1003
ArsI	GACNNNNNNTTYG	4 cut(s)	306, 338, 716, 748
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	3 cut(s)	322, 832, 986
AsuC2I	CCSGG	2 cut(s)	690, 984
AsuHPI	GGTGA	5 cut(s)	37, 126, 160, 205, 952
AsuNHI	GCTAGC	1 cut(s)	464
AvaII	GGWCC	2 cut(s)	322, 832
BalI	TGGCCA	2 cut(s)	450, 902
Bbv12I	GWGCWC	2 cut(s)	445, 654
BbvI	GCAGC	6 cut(s)	176, 184, 480, 1088, 1150, 1153
BccI	CCATC	6 cut(s)	56, 139, 532, 784, 928, 1019
BciT130I	CCWGG	3 cut(s)	339, 868, 1144
BciVI	GTATCC	1 cut(s)	814
BcnI	CCSGG	2 cut(s)	690, 984
BcoDI	GTCTC	1 cut(s)	484
BfaI	CTAG	2 cut(s)	465, 698
BfmI	CTRYAG	1 cut(s)	420
BfrI	CTTAAG	1 cut(s)	269
BfuI	GTATCC	1 cut(s)	814
BglII	AGATCT	1 cut(s)	375
BisI	GCNGC	6 cut(s)	165, 198, 469, 1077, 1164, 1167
BlsI	GCNGC	6 cut(s)	166, 199, 470, 1078, 1165, 1168
BmcAI	AGTACT	1 cut(s)	55
Bme1390I	CCNGG	5 cut(s)	339, 690, 868, 984, 1144
Bme18I	GGWCC	2 cut(s)	322, 832
BmgT120I	GGNCC	3 cut(s)	322, 832, 986
BmiI	GGNNCC	3 cut(s)	833, 834, 987
BmrFI	CCNGG	5 cut(s)	339, 690, 868, 984, 1144
BmsI	GCATC	8 cut(s)	64, 184, 727, 739, 761, 830, 844, 1088
BmtI	GCTAGC	1 cut(s)	468
BplI	GAGNNNNNCTC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	596
Bpu10I	CCTNAGC	1 cut(s)	648
BpuEI	CTTGAG	1 cut(s)	466
BpuMI	CCSGG	2 cut(s)	690, 984
BsaI	GGTCTC	1 cut(s)	484
BsaJI	CCNNGG	5 cut(s)	288, 338, 741, 983, 1143
BsaWI	WCCGGW	2 cut(s)	27, 353
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 306
Bse1I	ACTGG	3 cut(s)	91, 817, 1060
Bse3DI	GCAATG	1 cut(s)	265
BseAI	TCCGGA	1 cut(s)	353
BseBI	CCWGG	3 cut(s)	339, 868, 1144
BseDI	CCNNGG	5 cut(s)	288, 338, 741, 983, 1143
BseGI	GGATG	1 cut(s)	1079
BseLI	CCNNNNNNNGG	2 cut(s)	27, 306
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	3 cut(s)	486, 639, 987
BseNI	ACTGG	3 cut(s)	91, 817, 1060
BseRI	GAGGAG	2 cut(s)	14, 909
BseXI	GCAGC	6 cut(s)	176, 184, 480, 1088, 1150, 1153
BsgI	GTGCAG	1 cut(s)	183
Bsh1236I	CGCG	1 cut(s)	297
BshFI	GGCC	3 cut(s)	450, 902, 988
BsiHKAI	GWGCWC	2 cut(s)	445, 654
BsiSI	CCGG	4 cut(s)	28, 354, 690, 983
BslFI	GGGAC	4 cut(s)	355, 400, 845, 928
BslI	CCNNNNNNNGG	2 cut(s)	27, 306
BsmAI	GTCTC	1 cut(s)	484
BsmFI	GGGAC	4 cut(s)	355, 400, 845, 928
BsnI	GGCC	3 cut(s)	450, 902, 988
Bso31I	GGTCTC	1 cut(s)	484
Bsp1286I	GDGCHC	2 cut(s)	445, 654
Bsp13I	TCCGGA	1 cut(s)	353
Bsp143I	GATC	5 cut(s)	171, 227, 292, 309, 375
Bsp19I	CCATGG	1 cut(s)	741
BspACI	CCGC	1 cut(s)	216
BspANI	GGCC	3 cut(s)	450, 902, 988
BspCNI	CTCAG	3 cut(s)	487, 640, 988
BspEI	TCCGGA	1 cut(s)	353
BspFNI	CGCG	1 cut(s)	297
BspLI	GGNNCC	3 cut(s)	833, 834, 987
BspMAI	CTGCAG	1 cut(s)	424
BspOI	GCTAGC	1 cut(s)	468
BspPI	GGATC	3 cut(s)	235, 300, 317
BspTI	CTTAAG	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	484
BsrDI	GCAATG	1 cut(s)	265
BsrI	ACTGG	3 cut(s)	91, 817, 1060
BssECI	CCNNGG	5 cut(s)	288, 338, 741, 983, 1143
BssMI	GATC	5 cut(s)	171, 227, 292, 309, 375
BssT1I	CCWWGG	1 cut(s)	741
Bst2UI	CCWGG	3 cut(s)	339, 868, 1144
Bst6I	CTCTTC	3 cut(s)	19, 47, 1095
BstAFI	CTTAAG	1 cut(s)	269
BstAPI	GCANNNNNTGC	1 cut(s)	1073
BstC8I	GCNNGC	5 cut(s)	420, 452, 466, 532, 900
BstDEI	CTNAG	4 cut(s)	495, 648, 825, 996
BstDSI	CCRYGG	1 cut(s)	741
BstF5I	GGATG	1 cut(s)	1079
BstFNI	CGCG	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	5 cut(s)	174, 230, 295, 312, 378
BstMAI	GTCTC	1 cut(s)	484
BstMBI	GATC	5 cut(s)	171, 227, 292, 309, 375
BstMWI	GCNNNNNNNGC	3 cut(s)	506, 863, 1073
BstNI	CCWGG	3 cut(s)	339, 868, 1144
BstNSI	RCATGY	1 cut(s)	733
BstSCI	CCNGG	5 cut(s)	337, 688, 866, 982, 1142
BstSFI	CTRYAG	1 cut(s)	420
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	6 cut(s)	176, 184, 480, 1088, 1150, 1153
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	814
BsuRI	GGCC	3 cut(s)	450, 902, 988
BtgI	CCRYGG	1 cut(s)	741
BtsCI	GGATG	1 cut(s)	1079
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	2 cut(s)	429, 1053
Cac8I	GCNNGC	5 cut(s)	420, 452, 466, 532, 900
CfoI	GCGC	1 cut(s)	299
Cfr13I	GGNCC	3 cut(s)	322, 832, 986
Csp6I	GTAC	2 cut(s)	54, 398
CspCI	CAANNNNNGTGG	2 cut(s)	918, 953
CviAII	CATG	4 cut(s)	562, 730, 742, 1108
CviQI	GTAC	2 cut(s)	54, 398
DdeI	CTNAG	4 cut(s)	495, 648, 825, 996
DpnI	GATC	5 cut(s)	173, 229, 294, 311, 377
DpnII	GATC	5 cut(s)	171, 227, 292, 309, 375
EaeI	YGGCCR	2 cut(s)	448, 900
Eam1104I	CTCTTC	3 cut(s)	19, 47, 1095
EarI	CTCTTC	3 cut(s)	19, 47, 1095
Eco130I	CCWWGG	1 cut(s)	741
Eco31I	GGTCTC	1 cut(s)	484
Eco32I	GATATC	1 cut(s)	550
Eco47I	GGWCC	2 cut(s)	322, 832
Eco57I	CTGAAG	1 cut(s)	225
EcoO109I	RGGNCCY	1 cut(s)	832
EcoRI	GAATTC	1 cut(s)	693
EcoRII	CCWGG	3 cut(s)	337, 866, 1142
EcoRV	GATATC	1 cut(s)	550
EcoT14I	CCWWGG	1 cut(s)	741
EcoT22I	ATGCAT	1 cut(s)	754
ErhI	CCWWGG	1 cut(s)	741
FaeI	CATG	4 cut(s)	565, 733, 745, 1111
FaqI	GGGAC	4 cut(s)	355, 400, 845, 928
FatI	CATG	4 cut(s)	561, 729, 741, 1107
FauNDI	CATATG	2 cut(s)	94, 1039
Fnu4HI	GCNGC	6 cut(s)	165, 198, 469, 1077, 1164, 1167
FokI	GGATG	1 cut(s)	1066
Fsp4HI	GCNGC	6 cut(s)	165, 198, 469, 1077, 1164, 1167
FspBI	CTAG	2 cut(s)	465, 698
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	6 cut(s)	165, 198, 469, 1077, 1164, 1167
GsuI	CTGGAG	1 cut(s)	596
HaeIII	GGCC	3 cut(s)	450, 902, 988
HapII	CCGG	4 cut(s)	28, 354, 690, 983
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	4 cut(s)	565, 733, 745, 1111
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HindIII	AAGCTT	1 cut(s)	945
HinfI	GANTC	3 cut(s)	234, 343, 916
HpaII	CCGG	4 cut(s)	28, 354, 690, 983
HphI	GGTGA	5 cut(s)	37, 126, 160, 205, 952
Hpy166II	GTNNAC	4 cut(s)	84, 103, 488, 1053
Hpy188I	TCNGA	5 cut(s)	185, 496, 808, 997, 1010
Hpy188III	TCNNGA	6 cut(s)	175, 231, 354, 367, 575, 698
Hpy8I	GTNNAC	4 cut(s)	84, 103, 488, 1053
HpyAV	CCTTC	4 cut(s)	229, 313, 766, 904
HpyCH4IV	ACGT	2 cut(s)	80, 992
HpyCH4V	TGCA	7 cut(s)	77, 200, 422, 534, 752, 1067, 1076
HpyF10VI	GCNNNNNNNGC	3 cut(s)	506, 863, 1073
HpyF3I	CTNAG	4 cut(s)	495, 648, 825, 996
HpySE526I	ACGT	2 cut(s)	80, 992
Hsp92II	CATG	4 cut(s)	565, 733, 745, 1111
HspAI	GCGC	1 cut(s)	297
KflI	GGGWCCC	1 cut(s)	832
Kpn2I	TCCGGA	1 cut(s)	353
Kzo9I	GATC	5 cut(s)	171, 227, 292, 309, 375
LmnI	GCTCC	2 cut(s)	848, 1029
Lsp1109I	GCAGC	6 cut(s)	176, 184, 480, 1088, 1150, 1153
LweI	GCATC	8 cut(s)	64, 184, 727, 739, 761, 830, 844, 1088
MaeI	CTAG	2 cut(s)	465, 698
MaeII	ACGT	2 cut(s)	80, 992
MaeIII	GTNAC	3 cut(s)	148, 557, 641
MalI	GATC	5 cut(s)	173, 229, 294, 311, 377
MboI	GATC	5 cut(s)	171, 227, 292, 309, 375
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	2 cut(s)	445, 654
MlsI	TGGCCA	2 cut(s)	450, 902
MluCI	AATT	6 cut(s)	240, 511, 693, 883, 1003, 1096
MluNI	TGGCCA	2 cut(s)	450, 902
MlyI	GAGTC	2 cut(s)	337, 910
MmeI	TCCRAC	1 cut(s)	229
Mox20I	TGGCCA	2 cut(s)	450, 902
Mph1103I	ATGCAT	1 cut(s)	754
MroI	TCCGGA	1 cut(s)	353
MscI	TGGCCA	2 cut(s)	450, 902
MseI	TTAA	4 cut(s)	270, 594, 657, 1095
Msp20I	TGGCCA	2 cut(s)	450, 902
MspCI	CTTAAG	1 cut(s)	269
MspI	CCGG	4 cut(s)	28, 354, 690, 983
MspR9I	CCNGG	5 cut(s)	339, 690, 868, 984, 1144
MvaI	CCWGG	3 cut(s)	339, 868, 1144
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	3 cut(s)	506, 863, 1073
NciI	CCSGG	2 cut(s)	690, 984
NcoI	CCATGG	1 cut(s)	741
NdeI	CATATG	2 cut(s)	94, 1039
NdeII	GATC	5 cut(s)	171, 227, 292, 309, 375
NheI	GCTAGC	1 cut(s)	464
NlaIII	CATG	4 cut(s)	565, 733, 745, 1111
NlaIV	GGNNCC	3 cut(s)	833, 834, 987
NmeAIII	GCCGAG	1 cut(s)	313
NmuCI	GTSAC	2 cut(s)	148, 641
NsiI	ATGCAT	1 cut(s)	754
NspI	RCATGY	1 cut(s)	733
PciI	ACATGT	1 cut(s)	729
PfeI	GAWTC	1 cut(s)	234
PflMI	CCANNNNNTGG	1 cut(s)	306
PfoI	TCCNGGA	1 cut(s)	688
PkrI	GCNGC	6 cut(s)	166, 199, 470, 1078, 1165, 1168
PleI	GAGTC	2 cut(s)	337, 910
PpsI	GAGTC	2 cut(s)	337, 910
PpuMI	RGGWCCY	1 cut(s)	832
PscI	ACATGT	1 cut(s)	729
PsiI	TTATAA	1 cut(s)	636
Psp1406I	AACGTT	1 cut(s)	80
Psp5II	RGGWCCY	1 cut(s)	832
Psp6I	CCWGG	3 cut(s)	337, 866, 1142
PspGI	CCWGG	3 cut(s)	337, 866, 1142
PspN4I	GGNNCC	3 cut(s)	833, 834, 987
PspPI	GGNCC	3 cut(s)	322, 832, 986
PspPPI	RGGWCCY	1 cut(s)	832
PstI	CTGCAG	1 cut(s)	424
PsuI	RGATCY	1 cut(s)	375
RsaI	GTAC	2 cut(s)	55, 399
RsaNI	GTAC	2 cut(s)	54, 398
SaqAI	TTAA	4 cut(s)	270, 594, 657, 1095
SatI	GCNGC	6 cut(s)	165, 198, 469, 1077, 1164, 1167
Sau3AI	GATC	5 cut(s)	171, 227, 292, 309, 375
Sau96I	GGNCC	3 cut(s)	322, 832, 986
ScaI	AGTACT	1 cut(s)	55
SchI	GAGTC	2 cut(s)	337, 910
ScrFI	CCNGG	5 cut(s)	339, 690, 868, 984, 1144
SduI	GDGCHC	2 cut(s)	445, 654
SfaNI	GCATC	8 cut(s)	64, 184, 727, 739, 761, 830, 844, 1088
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	2 cut(s)	322, 832
SmlI	CTYRAG	2 cut(s)	269, 481
SmoI	CTYRAG	2 cut(s)	269, 481
Sse9I	AATT	6 cut(s)	240, 511, 693, 883, 1003, 1096
SsiI	CCGC	1 cut(s)	216
SspMI	CTAG	2 cut(s)	465, 698
StyD4I	CCNGG	5 cut(s)	337, 688, 866, 982, 1142
StyI	CCWWGG	1 cut(s)	741
TaiI	ACGT	2 cut(s)	83, 995
TaqI	TCGA	2 cut(s)	237, 1117
TasI	AATT	6 cut(s)	240, 511, 693, 883, 1003, 1096
TatI	WGTACW	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	4 cut(s)	270, 594, 657, 1095
Tru9I	TTAA	4 cut(s)	270, 594, 657, 1095
TscAI	CASTG	2 cut(s)	429, 1060
TseFI	GTSAC	2 cut(s)	148, 641
TseI	GCWGC	6 cut(s)	164, 197, 468, 1076, 1163, 1166
Tsp45I	GTSAC	2 cut(s)	148, 641
TspDTI	ATGAA	4 cut(s)	48, 578, 855, 1026
TspGWI	ACGGA	1 cut(s)	591
TspRI	CASTG	2 cut(s)	429, 1060
Van91I	CCANNNNNTGG	1 cut(s)	306
Vha464I	CTTAAG	1 cut(s)	269
VpaK11BI	GGWCC	2 cut(s)	322, 832
XapI	RAATTY	3 cut(s)	693, 883, 1003
XbaI	TCTAGA	1 cut(s)	697
XceI	RCATGY	1 cut(s)	733
XspI	CTAG	2 cut(s)	465, 698
ZrmI	AGTACT	1 cut(s)	55
Zsp2I	ATGCAT	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.