Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0015223

Physical Location & Seq

Genomic Coordinates Forward (+)

13468554 .. 13469980

Gene Structure 1427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g14110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGCACCTCTCTTTCCTCTGCTTCCTCCTACTCTTCTCAACCCCTGCATTTGTCAATGTCCATGCATCTTTTACTGGAACATATGGAGTAAACTATGGCAGGATCGCCGACAATATACCTTCGCCTCACAGCGTGGTGACGCTTCTTAAAGCGGCAAAGATAAAAAACGTCAGGATATATGACGCTGATCATGAAGTTCTCACCGCCTTCAAGGGATCAGGTATAGAAATAATTGTAGGACTGGGAAATGAGTTCCTCAAAGACATCAGTGTGAACGAGGATAGCGCCACAAATTGGATAAAAGAAAATGTGCAGCCATACATTCCGGGGACTCACATTTCAGGAATAGCAGTGGGGAATGAGATCTTGGGGGGAACTGATATAGAGCTCTCAGAGGTCTTATTGCCTGCCGTAAAGAACGTTTACAATGCGCTTAGCCGGCTTGATTTGGCTAACTCCATTCAGCTCTCGAGTCCACATTCGGAGGCTGTGTTTGCAAATTCCTACCCACCGTCGGCCTGCATTTTCAAGGAAGATGTTGCTCAATTCATGAAGCCGCTTTTGGAATTTTTCTCACAGATCAAATCCCCATTTTATATAAATGCATATCCATTTCTGGCATATAAGAGTGACCCTGAGCATATTGACCTTAACTATGCTCTCTTCAAGAAAAATGCCGGGATTCGTGATACAAAAACCAACCTGCATTACGACAACATGTTTGATGCAATGGTTGATGCGTCGTATTTTGCTCTGGAGAAGGCTGGATTTGACAAGACAGAGGTCATAGTTTCCGAAACTGGTTGGGCGTCTCACGGGGATGAAAGCGAAGCAGGAGCCAACGCCAAAAATGCCCGGACTTACAACTACAACCTGCGGAAACGGCTGATGAAGAAGAAGGGAACGCCTCATAGGCCAAAGACGGTTGTGAGAGCTTACATTTTTGCTTTGTTCAACGAGAATTTGAAACCGGGGCCGACTTCCGAGAGGAATTTCGGATTGTTCAAAGCTGATGGGAGCATTTCATATGACATTGGCTTCACTGGACTTGTTGGACCTTCTGCAGCATCCTCATCTCTTCTTAACTACAAGGTTTTCACAAGTTGTGCAGCTCTTCTGCTACTAGTGTTAGCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

380

Amino Acids

41.64

Weight (kDa)

6.56

Isoelectric Point (pI)

32.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15800
fragaria_vesca	FvH4_6g29810
malus_domestica	MD00G1122900.v1.1 MD17G1210800.v1.1
prunus_persica	Prupe.3G086200_v2.0.a1
pyrus_communis	pycom09g14110 pycom17g21580
rosa_chinensis	RchiOBHm_Chr2g0135631
rosa_laevigata	RLG00000019473
rosa_multiflora	Rmu_sc0002398.1_g000035
rosa_roxburghii	Rroxscaffold_2G00109030
rosa_rugosa	Rorug02G0325300
rosa_samantha	Rh2AG376700 Rh2BG383000 Rh2DG399100
rosa_wichuraiana	Rw2G030720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	711, 882
AccB7I	CCANNNNNTGG	1 cut(s)	294
AciI	CCGC	4 cut(s)	152, 204, 557, 877
AclI	AACGTT	1 cut(s)	420
AclWI	GGATC	2 cut(s)	110, 223
AcsI	RAATTY	4 cut(s)	499, 566, 961, 991
AcyI	GRCGYC	1 cut(s)	809
AdeI	CACNNNGTG	1 cut(s)	133
AfiI	CCNNNNNNNGG	2 cut(s)	294, 514
AflIII	ACRYGT	1 cut(s)	717
AgsI	TTSAA	6 cut(s)	211, 529, 667, 955, 967, 1006
AhlI	ACTAGT	1 cut(s)	1123
AjuI	GAANNNNNNNTTGG	4 cut(s)	350, 382, 545, 577
AluBI	AGCT	5 cut(s)	388, 466, 935, 1010, 1112
AluI	AGCT	5 cut(s)	388, 466, 935, 1010, 1112
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	1 cut(s)	816
AlwI	GGATC	2 cut(s)	110, 223
Ama87I	CYCGRG	1 cut(s)	469
AoxI	GGCC	3 cut(s)	516, 914, 974
ApeKI	GCWGC	3 cut(s)	313, 1064, 1109
ApoI	RAATTY	4 cut(s)	499, 566, 961, 991
ArsI	GACNNNNNNTTYG	2 cut(s)	704, 736
AspLEI	GCGC	2 cut(s)	287, 433
AspS9I	GGNCC	2 cut(s)	974, 1055
AsuC2I	CCSGG	4 cut(s)	327, 679, 856, 972
AsuHPI	GGTGA	2 cut(s)	148, 193
AvaI	CYCGRG	1 cut(s)	469
AvaII	GGWCC	1 cut(s)	1055
BanII	GRGCYC	1 cut(s)	390
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	3 cut(s)	325, 1076, 1121
BccI	CCATC	1 cut(s)	1007
BceAI	ACGGC	2 cut(s)	395, 899
BclI	TGATCA	1 cut(s)	187
BcnI	CCSGG	4 cut(s)	327, 679, 856, 972
BcoDI	GTCTC	1 cut(s)	816
BcuI	ACTAGT	1 cut(s)	1123
BfaI	CTAG	1 cut(s)	1124
BfmI	CTRYAG	1 cut(s)	1062
BfoI	RGCGCY	1 cut(s)	288
BfuAI	ACCTGC	2 cut(s)	711, 882
BglI	GCCNNNNNGGC	1 cut(s)	913
BglII	AGATCT	1 cut(s)	363
BisI	GCNGC	5 cut(s)	153, 314, 557, 1065, 1110
BlpI	GCTNAGC	1 cut(s)	434
BlsI	GCNGC	5 cut(s)	154, 315, 558, 1066, 1111
Bme1390I	CCNGG	4 cut(s)	327, 679, 856, 972
Bme18I	GGWCC	1 cut(s)	1055
BmeT110I	CYCGRG	1 cut(s)	469
BmgT120I	GGNCC	2 cut(s)	974, 1055
BmiI	GGNNCC	2 cut(s)	838, 975
BmrFI	CCNGG	4 cut(s)	327, 679, 856, 972
BmrI	ACTGGG	1 cut(s)	251
BmsI	GCATC	4 cut(s)	74, 715, 727, 1076
BmuI	ACTGGG	1 cut(s)	251
BoxI	GACNNNNGTC	1 cut(s)	782
BpmI	CTGGAG	1 cut(s)	776
Bpu10I	CCTNAGC	1 cut(s)	636
Bpu1102I	GCTNAGC	1 cut(s)	434
BpuMI	CCSGG	4 cut(s)	327, 679, 856, 972
BsaHI	GRCGYC	1 cut(s)	809
BsaJI	CCNNGG	2 cut(s)	326, 971
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 514
Bse118I	RCCGGY	1 cut(s)	438
Bse1I	ACTGG	4 cut(s)	79, 246, 805, 1048
Bse3DI	GCAATG	1 cut(s)	735
BseDI	CCNNGG	2 cut(s)	326, 971
BseGI	GGATG	2 cut(s)	826, 1067
BseLI	CCNNNNNNNGG	2 cut(s)	294, 514
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	2 cut(s)	405, 627
BseNI	ACTGG	4 cut(s)	79, 246, 805, 1048
BseXI	GCAGC	3 cut(s)	325, 1076, 1121
BsgI	GTGCAG	2 cut(s)	332, 1128
BshFI	GGCC	3 cut(s)	518, 916, 976
BsiHKAI	GWGCWC	1 cut(s)	390
BsiHKCI	CYCGRG	1 cut(s)	469
BsiSI	CCGG	5 cut(s)	326, 439, 678, 856, 971
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	2 cut(s)	294, 514
BsmAI	GTCTC	1 cut(s)	816
BsmBI	CGTCTC	1 cut(s)	816
BsmFI	GGGAC	1 cut(s)	343
BsnI	GGCC	3 cut(s)	518, 916, 976
BsoBI	CYCGRG	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	5 cut(s)	102, 187, 215, 363, 579
Bsp1720I	GCTNAGC	1 cut(s)	434
BspACI	CCGC	4 cut(s)	152, 204, 557, 877
BspANI	GGCC	3 cut(s)	518, 916, 976
BspCNI	CTCAG	2 cut(s)	404, 628
BspHI	TCATGA	2 cut(s)	190, 549
BspLI	GGNNCC	2 cut(s)	838, 975
BspMAI	CTGCAG	1 cut(s)	1066
BspMI	ACCTGC	2 cut(s)	711, 882
BspPI	GGATC	2 cut(s)	110, 223
BspQI	GCTCTTC	1 cut(s)	1119
BsrDI	GCAATG	1 cut(s)	735
BsrFI	RCCGGY	1 cut(s)	438
BsrI	ACTGG	4 cut(s)	79, 246, 805, 1048
BssAI	RCCGGY	1 cut(s)	438
BssECI	CCNNGG	2 cut(s)	326, 971
BssMI	GATC	5 cut(s)	102, 187, 215, 363, 579
BssNI	GRCGYC	1 cut(s)	809
Bst4CI	ACNGT	2 cut(s)	513, 925
Bst6I	CTCTTC	4 cut(s)	38, 668, 1083, 1119
BstACI	GRCGYC	1 cut(s)	809
BstC8I	GCNNGC	3 cut(s)	408, 440, 520
BstDEI	CTNAG	3 cut(s)	391, 434, 636
BstF5I	GGATG	2 cut(s)	826, 1067
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	2 cut(s)	287, 433
BstKTI	GATC	5 cut(s)	105, 190, 218, 366, 582
BstMAI	GTCTC	1 cut(s)	816
BstMBI	GATC	5 cut(s)	102, 187, 215, 363, 579
BstMWI	GCNNNNNNNGC	5 cut(s)	439, 494, 851, 883, 913
BstNSI	RCATGY	1 cut(s)	721
BstPAI	GACNNNNGTC	1 cut(s)	782
BstSCI	CCNGG	4 cut(s)	325, 677, 854, 970
BstSFI	CTRYAG	1 cut(s)	1062
BstV1I	GCAGC	3 cut(s)	325, 1076, 1121
BstX2I	RGATCY	1 cut(s)	363
BstYI	RGATCY	1 cut(s)	363
BsuRI	GGCC	3 cut(s)	518, 916, 976
BtsCI	GGATG	2 cut(s)	826, 1067
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	3 cut(s)	274, 357, 1041
BveI	ACCTGC	2 cut(s)	711, 882
Cac8I	GCNNGC	3 cut(s)	408, 440, 520
CciI	TCATGA	2 cut(s)	190, 549
CfoI	GCGC	2 cut(s)	287, 433
Cfr10I	RCCGGY	1 cut(s)	438
Cfr13I	GGNCC	2 cut(s)	974, 1055
CseI	GACGC	4 cut(s)	148, 191, 729, 798
CviAII	CATG	4 cut(s)	62, 191, 550, 718
DdeI	CTNAG	3 cut(s)	391, 434, 636
DpnI	GATC	5 cut(s)	104, 189, 217, 365, 581
DpnII	GATC	5 cut(s)	102, 187, 215, 363, 579
DraIII	CACNNNGTG	1 cut(s)	133
Eam1104I	CTCTTC	4 cut(s)	38, 668, 1083, 1119
EarI	CTCTTC	4 cut(s)	38, 668, 1083, 1119
Ecl136II	GAGCTC	1 cut(s)	388
Eco24I	GRGCYC	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	1055
Eco53kI	GAGCTC	1 cut(s)	388
Eco88I	CYCGRG	1 cut(s)	469
EcoICRI	GAGCTC	1 cut(s)	388
EcoT22I	ATGCAT	2 cut(s)	67, 607
EcoT38I	GRGCYC	1 cut(s)	390
Esp3I	CGTCTC	1 cut(s)	816
FaeI	CATG	4 cut(s)	65, 194, 553, 721
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	4 cut(s)	61, 190, 549, 717
FauNDI	CATATG	2 cut(s)	82, 1027
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	5 cut(s)	153, 314, 557, 1065, 1110
FokI	GGATG	2 cut(s)	833, 1054
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	5 cut(s)	153, 314, 557, 1065, 1110
FspBI	CTAG	1 cut(s)	1124
GlaI	GCGC	2 cut(s)	286, 432
GluI	GCNGC	5 cut(s)	153, 314, 557, 1065, 1110
GsuI	CTGGAG	1 cut(s)	776
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	3 cut(s)	518, 916, 976
HapII	CCGG	5 cut(s)	326, 439, 678, 856, 971
HgaI	GACGC	4 cut(s)	148, 191, 729, 798
HhaI	GCGC	2 cut(s)	287, 433
Hin1I	GRCGYC	1 cut(s)	809
Hin1II	CATG	4 cut(s)	65, 194, 553, 721
Hin6I	GCGC	2 cut(s)	285, 431
HinP1I	GCGC	2 cut(s)	285, 431
HinfI	GANTC	3 cut(s)	331, 472, 682
HpaII	CCGG	5 cut(s)	326, 439, 678, 856, 971
HphI	GGTGA	2 cut(s)	148, 193
Hpy166II	GTNNAC	4 cut(s)	91, 274, 424, 476
Hpy188I	TCNGA	5 cut(s)	394, 484, 796, 985, 998
Hpy188III	TCNNGA	8 cut(s)	172, 191, 342, 469, 550, 667, 686, 755
Hpy8I	GTNNAC	4 cut(s)	91, 274, 424, 476
Hpy99I	CGWCG	2 cut(s)	517, 745
HpyAV	CCTTC	5 cut(s)	129, 217, 754, 892, 1068
HpyCH4III	ACNGT	2 cut(s)	513, 925
HpyCH4IV	ACGT	2 cut(s)	168, 420
HpyF10VI	GCNNNNNNNGC	5 cut(s)	439, 494, 851, 883, 913
HpyF3I	CTNAG	3 cut(s)	391, 434, 636
HpySE526I	ACGT	2 cut(s)	168, 420
Hsp92I	GRCGYC	1 cut(s)	809
Hsp92II	CATG	4 cut(s)	65, 194, 553, 721
HspAI	GCGC	2 cut(s)	285, 431
KroI	GCCGGC	1 cut(s)	438
KroNI	GCCGGC	1 cut(s)	440
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	5 cut(s)	102, 187, 215, 363, 579
LguI	GCTCTTC	1 cut(s)	1119
LmnI	GCTCC	2 cut(s)	836, 1017
Lsp1109I	GCAGC	3 cut(s)	325, 1076, 1121
LweI	GCATC	4 cut(s)	74, 715, 727, 1076
MaeI	CTAG	1 cut(s)	1124
MaeII	ACGT	2 cut(s)	168, 420
MaeIII	GTNAC	2 cut(s)	136, 629
MalI	GATC	5 cut(s)	104, 189, 217, 365, 581
MboI	GATC	5 cut(s)	102, 187, 215, 363, 579
MboII	GAAGA	7 cut(s)	25, 545, 655, 904, 907, 1070, 1106
MflI	RGATCY	1 cut(s)	363
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	7 cut(s)	231, 292, 499, 545, 566, 961, 991
MlyI	GAGTC	2 cut(s)	325, 481
MmeI	TCCRAC	1 cut(s)	1033
Mph1103I	ATGCAT	2 cut(s)	67, 607
MroNI	GCCGGC	1 cut(s)	438
MseI	TTAA	3 cut(s)	147, 651, 1083
MslI	CAYNNNNRTG	2 cut(s)	269, 819
MspI	CCGG	5 cut(s)	326, 439, 678, 856, 971
MspR9I	CCNGG	4 cut(s)	327, 679, 856, 972
MwoI	GCNNNNNNNGC	5 cut(s)	439, 494, 851, 883, 913
NaeI	GCCGGC	1 cut(s)	440
NciI	CCSGG	4 cut(s)	327, 679, 856, 972
NdeI	CATATG	2 cut(s)	82, 1027
NdeII	GATC	5 cut(s)	102, 187, 215, 363, 579
NgoMIV	GCCGGC	1 cut(s)	438
NlaIII	CATG	4 cut(s)	65, 194, 553, 721
NlaIV	GGNNCC	2 cut(s)	838, 975
NmuCI	GTSAC	2 cut(s)	136, 629
NsiI	ATGCAT	2 cut(s)	67, 607
NspI	RCATGY	1 cut(s)	721
PaeR7I	CTCGAG	1 cut(s)	469
PagI	TCATGA	2 cut(s)	190, 549
PciI	ACATGT	1 cut(s)	717
PciSI	GCTCTTC	1 cut(s)	1119
PdiI	GCCGGC	1 cut(s)	440
PfeI	GAWTC	1 cut(s)	682
PflMI	CCANNNNNTGG	1 cut(s)	294
PkrI	GCNGC	5 cut(s)	154, 315, 558, 1066, 1111
PleI	GAGTC	2 cut(s)	325, 480
PpsI	GAGTC	2 cut(s)	325, 480
PscI	ACATGT	1 cut(s)	717
PshAI	GACNNNNGTC	1 cut(s)	782
Psp124BI	GAGCTC	1 cut(s)	390
Psp1406I	AACGTT	1 cut(s)	420
PspN4I	GGNNCC	2 cut(s)	838, 975
PspPI	GGNCC	2 cut(s)	974, 1055
PstI	CTGCAG	1 cut(s)	1066
PsuI	RGATCY	1 cut(s)	363
RseI	CAYNNNNRTG	2 cut(s)	269, 819
SacI	GAGCTC	1 cut(s)	390
SapI	GCTCTTC	1 cut(s)	1119
SaqAI	TTAA	3 cut(s)	147, 651, 1083
SatI	GCNGC	5 cut(s)	153, 314, 557, 1065, 1110
Sau3AI	GATC	5 cut(s)	102, 187, 215, 363, 579
Sau96I	GGNCC	2 cut(s)	974, 1055
SchI	GAGTC	2 cut(s)	325, 481
ScrFI	CCNGG	4 cut(s)	327, 679, 856, 972
SduI	GDGCHC	1 cut(s)	390
SfaNI	GCATC	4 cut(s)	74, 715, 727, 1076
SfcI	CTRYAG	1 cut(s)	1062
Sfr274I	CTCGAG	1 cut(s)	469
SinI	GGWCC	1 cut(s)	1055
SlaI	CTCGAG	1 cut(s)	469
SmiMI	CAYNNNNRTG	2 cut(s)	269, 819
SmlI	CTYRAG	1 cut(s)	469
SmoI	CTYRAG	1 cut(s)	469
SpeI	ACTAGT	1 cut(s)	1123
Sse9I	AATT	7 cut(s)	231, 292, 499, 545, 566, 961, 991
SsiI	CCGC	4 cut(s)	152, 204, 557, 877
SspMI	CTAG	1 cut(s)	1124
SstI	GAGCTC	1 cut(s)	390
StyD4I	CCNGG	4 cut(s)	325, 677, 854, 970
TaaI	ACNGT	2 cut(s)	513, 925
TaiI	ACGT	2 cut(s)	171, 423
TaqI	TCGA	1 cut(s)	470
TasI	AATT	7 cut(s)	231, 292, 499, 545, 566, 961, 991
TauI	GCSGC	2 cut(s)	155, 559
TfiI	GAWTC	1 cut(s)	682
Tru1I	TTAA	3 cut(s)	147, 651, 1083
Tru9I	TTAA	3 cut(s)	147, 651, 1083
TscAI	CASTG	3 cut(s)	274, 357, 1048
TseFI	GTSAC	2 cut(s)	136, 629
TseI	GCWGC	3 cut(s)	313, 1064, 1109
Tsp45I	GTSAC	2 cut(s)	136, 629
TspDTI	ATGAA	6 cut(s)	207, 538, 566, 837, 905, 1014
TspRI	CASTG	3 cut(s)	274, 357, 1048
Van91I	CCANNNNNTGG	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	1055
XapI	RAATTY	4 cut(s)	499, 566, 961, 991
XceI	RCATGY	1 cut(s)	721
XhoI	CTCGAG	1 cut(s)	469
XspI	CTAG	1 cut(s)	1124
Zsp2I	ATGCAT	2 cut(s)	67, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.