Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015223

Physical Location & Seq

Genomic Coordinates Forward (+)

33124357 .. 33126328

Gene Structure 1972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00109030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGAGTGCTTCTCTTCCTCCCTCCTCCGGTTGCTTCTTCTCTTCACCATCAGTACTTCATTTCTCAATGTTGATGCAACGTTTACTGGAACATATGGAGTAAACTATGGCAGGATAGCAGACAACATACCATCACCTCATAGTGTGGTGACACTTCTCAAAGCAGCGAAGATTAAGAACATCAGAATATATGATGCTGCACCTGAAGTCCTCACCGCCTTCAAGGGATCAGGAATCGAAATAGTTGTTGGACTTGGCAATGATCTCCTTAAGGATATCAGCATAGCCGAGGATCGCGCCACGACTTGGATCAAAGAGAAGGTCTTGTTGCCTGCAGTGAAGAATGTGTATAGTGCTCTTGGCCAGCTTGGTTTGGCTAGCAGCATTGAGGTCTCAAGTCCACATTCTGAGGCTGTTTTTGCCAATTCTTACCCACCTTCTGCTTGCATTTTTAGAGAAGATATTGCTGGTTACATGAAGCCACTTCTGGAGTTCTTTTCGCAGATTAAATCTCCGTTTTACATAAACGCATATCCATTCCTTGCTTATAAGAGTGACCCTGAGCACATTAACCTCAACTATGCTCTATTCAAGTCAAATCCCGGAATTCTAGACACAAAGACTAATCTCCACTATGACAACATGTTCGATGCCATGGTTGATGCATCTTATTTCGCTTTGGAGAAGGCTGGATATGACAAGATGGAAGTCATAGTATCCGAAACTGGTTGGGCATCCAAGGGGGACCCAGATGAAGCAGGAGCAGATGCGAAAAATGCCAGGACTTACAACTTGAATTTGAAGAAAAGGCTGGCCAAGAAGAAGGGGACTCCTCATAGGCCAAAGATGGTGGTGAAAGCCTATATTTTTGCTTTGTTCAATGAGAACTTGAAACCGGGGCCAACGTCTGAGAGGAATTTCGGATTGTTCAAAGCAGATGGGAGCATTTCGTATGACATTGGGTTCACTGGACTTGTTGCACCAAACGCAGCATCCTCATCTCTTCTTAATTACAAGGGCATGGGATTTCGAGGTTGGTTTCAATCTTCGCATACCTGGGTTTTCACTAGTTGTGCTGCTGTTCTGTTTCTAATGTTATCGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

368

Amino Acids

40.43

Weight (kDa)

8.5

Isoelectric Point (pI)

36.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	33 - 108	7.4e-15	Glycosyl hydrolases family 17
Glyco_hydro_17	PF00332	107 - 322	1.1e-56	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15800
fragaria_vesca	FvH4_6g29810
malus_domestica	MD00G1122900.v1.1 MD17G1210800.v1.1
prunus_persica	Prupe.3G086200_v2.0.a1
pyrus_communis	pycom09g14110 pycom17g21580
rosa_chinensis	RchiOBHm_Chr2g0135631
rosa_laevigata	RLG00000019473
rosa_multiflora	Rmu_sc0002398.1_g000035
rosa_roxburghii	Rroxscaffold_2G00109030
rosa_rugosa	Rorug02G0325300
rosa_samantha	Rh2AG376700 Rh2BG383000 Rh2DG399100
rosa_wichuraiana	Rw2G030720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
AccB7I	CCANNNNNTGG	1 cut(s)	306
AccII	CGCG	1 cut(s)	297
AciI	CCGC	1 cut(s)	216
AclI	AACGTT	1 cut(s)	80
AclWI	GGATC	3 cut(s)	235, 300, 317
AcoI	YGGCCR	2 cut(s)	361, 813
AcsI	RAATTY	3 cut(s)	606, 796, 916
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	1 cut(s)	55
AfiI	CCNNNNNNNGG	2 cut(s)	27, 306
AflII	CTTAAG	1 cut(s)	269
AflIII	ACRYGT	1 cut(s)	642
AgsI	TTSAA	8 cut(s)	223, 592, 796, 802, 880, 892, 931, 1043
AhlI	ACTAGT	1 cut(s)	1067
AjnI	CCWGG	2 cut(s)	779, 1055
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	1 cut(s)	367
AluI	AGCT	1 cut(s)	367
Alw21I	GWGCWC	2 cut(s)	358, 567
Alw26I	GTCTC	1 cut(s)	397
AlwI	GGATC	3 cut(s)	235, 300, 317
AoxI	GGCC	4 cut(s)	361, 813, 839, 899
ApeKI	GCWGC	5 cut(s)	164, 197, 381, 989, 1076
ApoI	RAATTY	3 cut(s)	606, 796, 916
ArsI	GACNNNNNNTTYG	4 cut(s)	306, 338, 629, 661
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	745, 899
AsuC2I	CCSGG	2 cut(s)	603, 897
AsuHPI	GGTGA	5 cut(s)	37, 126, 160, 205, 865
AsuNHI	GCTAGC	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	745
BalI	TGGCCA	2 cut(s)	363, 815
Bbv12I	GWGCWC	2 cut(s)	358, 567
BbvI	GCAGC	5 cut(s)	176, 184, 393, 1001, 1063
BccI	CCATC	5 cut(s)	56, 139, 697, 841, 932
BciT130I	CCWGG	2 cut(s)	781, 1057
BciVI	GTATCC	1 cut(s)	727
BcnI	CCSGG	2 cut(s)	603, 897
BcoDI	GTCTC	1 cut(s)	397
BcuI	ACTAGT	1 cut(s)	1067
BfaI	CTAG	3 cut(s)	378, 611, 1068
BfmI	CTRYAG	1 cut(s)	333
BfrI	CTTAAG	1 cut(s)	269
BfuI	GTATCC	1 cut(s)	727
BisI	GCNGC	5 cut(s)	165, 198, 382, 990, 1077
BlsI	GCNGC	5 cut(s)	166, 199, 383, 991, 1078
BmcAI	AGTACT	1 cut(s)	55
Bme1390I	CCNGG	4 cut(s)	603, 781, 897, 1057
Bme18I	GGWCC	1 cut(s)	745
BmgT120I	GGNCC	2 cut(s)	745, 899
BmiI	GGNNCC	3 cut(s)	746, 747, 900
BmrFI	CCNGG	4 cut(s)	603, 781, 897, 1057
BmsI	GCATC	8 cut(s)	64, 184, 640, 652, 674, 743, 757, 1001
BmtI	GCTAGC	1 cut(s)	381
BplI	GAGNNNNNCTC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	509
Bpu10I	CCTNAGC	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	379
BpuMI	CCSGG	2 cut(s)	603, 897
BsaI	GGTCTC	1 cut(s)	397
BsaJI	CCNNGG	5 cut(s)	288, 654, 738, 896, 1056
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 306
Bse1I	ACTGG	3 cut(s)	91, 730, 973
Bse3DI	GCAATG	1 cut(s)	265
BseBI	CCWGG	2 cut(s)	781, 1057
BseDI	CCNNGG	5 cut(s)	288, 654, 738, 896, 1056
BseGI	GGATG	2 cut(s)	734, 992
BseLI	CCNNNNNNNGG	2 cut(s)	27, 306
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	3 cut(s)	399, 552, 900
BseNI	ACTGG	3 cut(s)	91, 730, 973
BseRI	GAGGAG	2 cut(s)	14, 822
BseXI	GCAGC	5 cut(s)	176, 184, 393, 1001, 1063
BsgI	GTGCAG	1 cut(s)	183
Bsh1236I	CGCG	1 cut(s)	297
BshFI	GGCC	4 cut(s)	363, 815, 841, 901
BsiHKAI	GWGCWC	2 cut(s)	358, 567
BsiSI	CCGG	3 cut(s)	28, 603, 896
BslFI	GGGAC	2 cut(s)	758, 841
BslI	CCNNNNNNNGG	2 cut(s)	27, 306
BsmAI	GTCTC	1 cut(s)	397
BsmFI	GGGAC	2 cut(s)	758, 841
BsnI	GGCC	4 cut(s)	363, 815, 841, 901
Bso31I	GGTCTC	1 cut(s)	397
Bsp1286I	GDGCHC	2 cut(s)	358, 567
Bsp143I	GATC	4 cut(s)	227, 262, 292, 309
Bsp19I	CCATGG	1 cut(s)	654
BspACI	CCGC	1 cut(s)	216
BspANI	GGCC	4 cut(s)	363, 815, 841, 901
BspCNI	CTCAG	3 cut(s)	400, 553, 901
BspFNI	CGCG	1 cut(s)	297
BspLI	GGNNCC	3 cut(s)	746, 747, 900
BspMAI	CTGCAG	1 cut(s)	337
BspOI	GCTAGC	1 cut(s)	381
BspPI	GGATC	3 cut(s)	235, 300, 317
BspTI	CTTAAG	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	397
BsrDI	GCAATG	1 cut(s)	265
BsrI	ACTGG	3 cut(s)	91, 730, 973
BssECI	CCNNGG	5 cut(s)	288, 654, 738, 896, 1056
BssMI	GATC	4 cut(s)	227, 262, 292, 309
BssT1I	CCWWGG	2 cut(s)	654, 738
Bst2UI	CCWGG	2 cut(s)	781, 1057
Bst6I	CTCTTC	3 cut(s)	19, 47, 1008
BstAFI	CTTAAG	1 cut(s)	269
BstC8I	GCNNGC	5 cut(s)	333, 365, 379, 445, 813
BstDEI	CTNAG	3 cut(s)	408, 561, 909
BstDSI	CCRYGG	1 cut(s)	654
BstF5I	GGATG	2 cut(s)	734, 992
BstFNI	CGCG	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	4 cut(s)	230, 265, 295, 312
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	4 cut(s)	227, 262, 292, 309
BstMWI	GCNNNNNNNGC	3 cut(s)	419, 776, 986
BstNI	CCWGG	2 cut(s)	781, 1057
BstNSI	RCATGY	1 cut(s)	646
BstSCI	CCNGG	4 cut(s)	601, 779, 895, 1055
BstSFI	CTRYAG	1 cut(s)	333
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	5 cut(s)	176, 184, 393, 1001, 1063
BsuI	GTATCC	1 cut(s)	727
BsuRI	GGCC	4 cut(s)	363, 815, 841, 901
BtgI	CCRYGG	1 cut(s)	654
BtsCI	GGATG	2 cut(s)	734, 992
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	342, 966
Cac8I	GCNNGC	5 cut(s)	333, 365, 379, 445, 813
CfoI	GCGC	1 cut(s)	299
Cfr13I	GGNCC	2 cut(s)	745, 899
Csp6I	GTAC	1 cut(s)	54
CspCI	CAANNNNNGTGG	2 cut(s)	831, 866
CviAII	CATG	4 cut(s)	475, 643, 655, 1021
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	3 cut(s)	408, 561, 909
DpnI	GATC	4 cut(s)	229, 264, 294, 311
DpnII	GATC	4 cut(s)	227, 262, 292, 309
EaeI	YGGCCR	2 cut(s)	361, 813
Eam1104I	CTCTTC	3 cut(s)	19, 47, 1008
EarI	CTCTTC	3 cut(s)	19, 47, 1008
Eco130I	CCWWGG	2 cut(s)	654, 738
Eco31I	GGTCTC	1 cut(s)	397
Eco32I	GATATC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	745
Eco57I	CTGAAG	1 cut(s)	225
EcoO109I	RGGNCCY	1 cut(s)	745
EcoRI	GAATTC	1 cut(s)	606
EcoRII	CCWGG	2 cut(s)	779, 1055
EcoRV	GATATC	1 cut(s)	277
EcoT14I	CCWWGG	2 cut(s)	654, 738
EcoT22I	ATGCAT	1 cut(s)	667
ErhI	CCWWGG	2 cut(s)	654, 738
FaeI	CATG	4 cut(s)	478, 646, 658, 1024
FaqI	GGGAC	2 cut(s)	758, 841
FatI	CATG	4 cut(s)	474, 642, 654, 1020
FauNDI	CATATG	1 cut(s)	94
Fnu4HI	GCNGC	5 cut(s)	165, 198, 382, 990, 1077
FokI	GGATG	2 cut(s)	721, 979
Fsp4HI	GCNGC	5 cut(s)	165, 198, 382, 990, 1077
FspBI	CTAG	3 cut(s)	378, 611, 1068
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	5 cut(s)	165, 198, 382, 990, 1077
GsuI	CTGGAG	1 cut(s)	509
HaeIII	GGCC	4 cut(s)	363, 815, 841, 901
HapII	CCGG	3 cut(s)	28, 603, 896
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	4 cut(s)	478, 646, 658, 1024
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HinfI	GANTC	2 cut(s)	234, 829
HpaII	CCGG	3 cut(s)	28, 603, 896
HphI	GGTGA	5 cut(s)	37, 126, 160, 205, 865
Hpy166II	GTNNAC	4 cut(s)	84, 103, 401, 966
Hpy188I	TCNGA	5 cut(s)	185, 409, 721, 910, 923
Hpy188III	TCNNGA	3 cut(s)	231, 488, 611
Hpy8I	GTNNAC	4 cut(s)	84, 103, 401, 966
HpyAV	CCTTC	5 cut(s)	229, 313, 447, 679, 817
HpyCH4IV	ACGT	2 cut(s)	80, 905
HpyCH4V	TGCA	6 cut(s)	77, 200, 335, 447, 665, 980
HpyF10VI	GCNNNNNNNGC	3 cut(s)	419, 776, 986
HpyF3I	CTNAG	3 cut(s)	408, 561, 909
HpySE526I	ACGT	2 cut(s)	80, 905
Hsp92II	CATG	4 cut(s)	478, 646, 658, 1024
HspAI	GCGC	1 cut(s)	297
KflI	GGGWCCC	1 cut(s)	745
Kzo9I	GATC	4 cut(s)	227, 262, 292, 309
LmnI	GCTCC	2 cut(s)	761, 942
Lsp1109I	GCAGC	5 cut(s)	176, 184, 393, 1001, 1063
LweI	GCATC	8 cut(s)	64, 184, 640, 652, 674, 743, 757, 1001
MaeI	CTAG	3 cut(s)	378, 611, 1068
MaeII	ACGT	2 cut(s)	80, 905
MaeIII	GTNAC	3 cut(s)	148, 470, 554
MalI	GATC	4 cut(s)	229, 264, 294, 311
MboI	GATC	4 cut(s)	227, 262, 292, 309
MhlI	GDGCHC	2 cut(s)	358, 567
MlsI	TGGCCA	2 cut(s)	363, 815
MluCI	AATT	5 cut(s)	424, 606, 796, 916, 1009
MluNI	TGGCCA	2 cut(s)	363, 815
MlyI	GAGTC	1 cut(s)	823
MmeI	TCCRAC	1 cut(s)	229
Mox20I	TGGCCA	2 cut(s)	363, 815
Mph1103I	ATGCAT	1 cut(s)	667
MscI	TGGCCA	2 cut(s)	363, 815
MseI	TTAA	5 cut(s)	174, 270, 507, 570, 1008
Msp20I	TGGCCA	2 cut(s)	363, 815
MspCI	CTTAAG	1 cut(s)	269
MspI	CCGG	3 cut(s)	28, 603, 896
MspR9I	CCNGG	4 cut(s)	603, 781, 897, 1057
MvaI	CCWGG	2 cut(s)	781, 1057
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	3 cut(s)	419, 776, 986
NciI	CCSGG	2 cut(s)	603, 897
NcoI	CCATGG	1 cut(s)	654
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	4 cut(s)	227, 262, 292, 309
NheI	GCTAGC	1 cut(s)	377
NlaIII	CATG	4 cut(s)	478, 646, 658, 1024
NlaIV	GGNNCC	3 cut(s)	746, 747, 900
NmeAIII	GCCGAG	1 cut(s)	313
NmuCI	GTSAC	2 cut(s)	148, 554
NsiI	ATGCAT	1 cut(s)	667
NspI	RCATGY	1 cut(s)	646
PciI	ACATGT	1 cut(s)	642
PfeI	GAWTC	1 cut(s)	234
PflMI	CCANNNNNTGG	1 cut(s)	306
PfoI	TCCNGGA	1 cut(s)	601
PkrI	GCNGC	5 cut(s)	166, 199, 383, 991, 1078
PleI	GAGTC	1 cut(s)	823
PpsI	GAGTC	1 cut(s)	823
PpuMI	RGGWCCY	1 cut(s)	745
PscI	ACATGT	1 cut(s)	642
PsiI	TTATAA	1 cut(s)	549
Psp1406I	AACGTT	1 cut(s)	80
Psp5II	RGGWCCY	1 cut(s)	745
Psp6I	CCWGG	2 cut(s)	779, 1055
PspGI	CCWGG	2 cut(s)	779, 1055
PspN4I	GGNNCC	3 cut(s)	746, 747, 900
PspPI	GGNCC	2 cut(s)	745, 899
PspPPI	RGGWCCY	1 cut(s)	745
PstI	CTGCAG	1 cut(s)	337
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
SaqAI	TTAA	5 cut(s)	174, 270, 507, 570, 1008
SatI	GCNGC	5 cut(s)	165, 198, 382, 990, 1077
Sau3AI	GATC	4 cut(s)	227, 262, 292, 309
Sau96I	GGNCC	2 cut(s)	745, 899
ScaI	AGTACT	1 cut(s)	55
SchI	GAGTC	1 cut(s)	823
ScrFI	CCNGG	4 cut(s)	603, 781, 897, 1057
SduI	GDGCHC	2 cut(s)	358, 567
SfaNI	GCATC	8 cut(s)	64, 184, 640, 652, 674, 743, 757, 1001
SfcI	CTRYAG	1 cut(s)	333
SinI	GGWCC	1 cut(s)	745
SmlI	CTYRAG	2 cut(s)	269, 394
SmoI	CTYRAG	2 cut(s)	269, 394
SpeI	ACTAGT	1 cut(s)	1067
Sse9I	AATT	5 cut(s)	424, 606, 796, 916, 1009
SsiI	CCGC	1 cut(s)	216
SspMI	CTAG	3 cut(s)	378, 611, 1068
StyD4I	CCNGG	4 cut(s)	601, 779, 895, 1055
StyI	CCWWGG	2 cut(s)	654, 738
TaiI	ACGT	2 cut(s)	83, 908
TaqI	TCGA	3 cut(s)	237, 648, 1030
TasI	AATT	5 cut(s)	424, 606, 796, 916, 1009
TatI	WGTACW	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	5 cut(s)	174, 270, 507, 570, 1008
Tru9I	TTAA	5 cut(s)	174, 270, 507, 570, 1008
TscAI	CASTG	2 cut(s)	342, 973
TseFI	GTSAC	2 cut(s)	148, 554
TseI	GCWGC	5 cut(s)	164, 197, 381, 989, 1076
Tsp45I	GTSAC	2 cut(s)	148, 554
TspDTI	ATGAA	3 cut(s)	48, 491, 768
TspGWI	ACGGA	1 cut(s)	504
TspRI	CASTG	2 cut(s)	342, 973
Van91I	CCANNNNNTGG	1 cut(s)	306
Vha464I	CTTAAG	1 cut(s)	269
VpaK11BI	GGWCC	1 cut(s)	745
XapI	RAATTY	3 cut(s)	606, 796, 916
XbaI	TCTAGA	1 cut(s)	610
XceI	RCATGY	1 cut(s)	646
XspI	CTAG	3 cut(s)	378, 611, 1068
ZrmI	AGTACT	1 cut(s)	55
Zsp2I	ATGCAT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.