Prupe.3G086200_v2.0.a1

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
6384883 .. 6387111
2229 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G086200.1

Sequence Viewer

Length: 1179 bp
ATGGAGCTCTCTTATCTCTGCTTCCTTCTTGTCTTCTCCACCACTACATTTCTCAATGTGGATGCATCTTTTACAGGAACATATGGAGTAAACTATGGCCGGATCGCTGACAATATACCTTCACCTCACAGTGTGGTAACACTTCTCAAAGCAGCAAAGATCAAGAACATCAGGATATACGACGCTGATCACGAAGTCCTCACCGCTTTCAAGGGATCGGGGATTCAAATAATTGTTGGACTTGGAAATGGGCTCCTGAAAGACATCAGTGTAGCCGAGGATCGCGCCATGAATTGGATAAATGAAAATGTGCAGCCATACATTCCTGGAACTCACATTTCCGGAATAGCAGTGGGGAATGAGATCTTGGGGGGCACTGATGTGGAACTCTGGGAGGCCTTGTTGCCTGCTGCCAAGAATGTTTACAGCGCGCTTCAAAGGCTTGGTTTGGCAAAATCCATTGAGGTCTCAAGTCCACATTCAGAGGCTGTGTTTGCCAGTTCTTACCCACCATCTGCCTGCATTTTCAGGGAAGATGTTGCTCAATACATAAATCCGCTTTTGGAGTTCTTCTCACAGATCAATTCCCCTTTCTATATAAATGCATATCCATTTCTGGCCTACAAGAGTGATCCTGAGCACATTGACCTCAACTATGCTCTCTTTAAAAAAAATGCTGGGATTCAGGACACAAAGACTAACCTGCACTACGACAACATGTTCGACGCCATGGTTGATGCAGCTTATTTTGCTCTGGAGAAGGCTGGATTTGAGAAGACAGAGGTTATTGTTTCTGAAACTGGTTGGGCATCTAAAGGGGACGAAAATGAAGCAGGAGCAGATCCCAAAAATGCCAGGACTTACAACTACAACTTACGCAAACGGCTAATGAAGAAGAAGGGGACACCTCATAGGCCAAAGATGGAAGTGAAAGCTTACATCTTTGCTTTGTTCAATGAGAATTTGAAGCCGGGGCCGACGTCTGAGAGGAACTTCGGATTGTTCAAAGCTGATGGGAGCATTTCTTATGACATTGGGTTCACTGGACTTGTAGGTCCTTCTGCAGCATCCTCATCTCTCCTTAATTACAAGGGTCTTGGACTTCGAGGCTGGTTTCAATCTTCACATACGTGGGTTTTCACAAGTTGTGCTGCTGTTCTGTTTTTAATGTTAACATGA

Protein Analysis

393

Amino Acids

43.22

Weight (kDa)

6.09

Isoelectric Point (pI)

31.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015223)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15800
fragaria_vesca FvH4_6g29810
malus_domestica MD00G1122900.v1.1 MD17G1210800.v1.1
prunus_persica Prupe.3G086200_v2.0.a1
pyrus_communis pycom09g14110 pycom17g21580
rosa_chinensis RchiOBHm_Chr2g0135631
rosa_laevigata RLG00000019473
rosa_multiflora Rmu_sc0002398.1_g000035
rosa_roxburghii Rroxscaffold_2G00109030
rosa_rugosa Rorug02G0325300
rosa_samantha Rh2AG376700 Rh2BG383000 Rh2DG399100
rosa_wichuraiana Rw2G030720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1053
AatII GACGTC 1 cut(s) 983
Acc36I ACCTGC 1 cut(s) 711
AccB7I CCANNNNNTGG 1 cut(s) 294
AccII CGCG 2 cut(s) 285, 431
AccIII TCCGGA 1 cut(s) 341
AciI CCGC 2 cut(s) 204, 557
AclWI GGATC 5 cut(s) 110, 223, 288, 626, 836
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 1 cut(s) 961
AcyI GRCGYC 2 cut(s) 726, 980
AdeI CACNNNGTG 1 cut(s) 133
AfiI CCNNNNNNNGG 1 cut(s) 294
AflIII ACRYGT 1 cut(s) 717
AgsI TTSAA 7 cut(s) 211, 227, 437, 955, 967, 1006, 1118
AjnI CCWGG 2 cut(s) 325, 854
AjuI GAANNNNNNNTTGG 2 cut(s) 350, 382
AleI CACNNNNGTG 2 cut(s) 380, 1129
AluBI AGCT 4 cut(s) 7, 743, 935, 1010
AluI AGCT 4 cut(s) 7, 743, 935, 1010
Alw21I GWGCWC 2 cut(s) 9, 642
Alw26I GTCTC 1 cut(s) 472
AlwI GGATC 5 cut(s) 110, 223, 288, 626, 836
AlwNI CAGNNNCTG 1 cut(s) 488
Aor13HI TCCGGA 1 cut(s) 341
AoxI GGCC 5 cut(s) 97, 396, 618, 914, 974
ApeKI GCWGC 6 cut(s) 152, 313, 410, 740, 1064, 1151
ApoI RAATTY 1 cut(s) 961
ArsI GACNNNNNNTTYG 2 cut(s) 704, 736
AspLEI GCGC 3 cut(s) 287, 431, 433
AspS9I GGNCC 2 cut(s) 974, 1055
AsuC2I CCSGG 1 cut(s) 972
AsuHPI GGTGA 2 cut(s) 114, 193
AvaII GGWCC 1 cut(s) 1055
BaeGI GKGCMC 1 cut(s) 377
BanII GRGCYC 2 cut(s) 9, 255
BbsI GAAGAC 2 cut(s) 25, 782
Bbv12I GWGCWC 2 cut(s) 9, 642
BbvI GCAGC 6 cut(s) 164, 325, 397, 752, 1076, 1138
BccI CCATC 3 cut(s) 520, 916, 1007
BceAI ACGGC 1 cut(s) 899
BciT130I CCWGG 2 cut(s) 327, 856
BclI TGATCA 1 cut(s) 187
BcnI CCSGG 1 cut(s) 972
BcoDI GTCTC 1 cut(s) 472
BfmI CTRYAG 1 cut(s) 1062
BfuAI ACCTGC 1 cut(s) 711
BglII AGATCT 1 cut(s) 363
BisI GCNGC 6 cut(s) 153, 314, 411, 741, 1065, 1152
BlsI GCNGC 6 cut(s) 154, 315, 412, 742, 1066, 1153
Bme1390I CCNGG 3 cut(s) 327, 856, 972
Bme18I GGWCC 1 cut(s) 1055
BmgT120I GGNCC 2 cut(s) 974, 1055
BmiI GGNNCC 2 cut(s) 254, 975
BmrFI CCNGG 3 cut(s) 327, 856, 972
BmsI GCATC 5 cut(s) 52, 74, 727, 818, 1076
BpiI GAAGAC 2 cut(s) 25, 782
BplI GAGNNNNNCTC 2 cut(s) 557, 589
BpmI CTGGAG 1 cut(s) 776
Bpu10I CCTNAGC 1 cut(s) 636
BpuEI CTTGAG 1 cut(s) 454
BpuMI CCSGG 1 cut(s) 972
BsaAI YACGTR 1 cut(s) 1131
BsaHI GRCGYC 2 cut(s) 726, 980
BsaI GGTCTC 1 cut(s) 472
BsaJI CCNNGG 3 cut(s) 276, 729, 971
BsaWI WCCGGW 1 cut(s) 341
BsaXI ACNNNNNCTCC 2 cut(s) 386, 416
Bsc4I CCNNNNNNNGG 1 cut(s) 294
Bse1I ACTGG 3 cut(s) 498, 805, 1048
BseAI TCCGGA 1 cut(s) 341
BseBI CCWGG 2 cut(s) 327, 856
BseDI CCNNGG 3 cut(s) 276, 729, 971
BseGI GGATG 2 cut(s) 67, 1067
BseLI CCNNNNNNNGG 1 cut(s) 294
BseMII CTCAG 2 cut(s) 627, 975
BseNI ACTGG 3 cut(s) 498, 805, 1048
BsePI GCGCGC 1 cut(s) 429
BseSI GKGCMC 1 cut(s) 377
BseXI GCAGC 6 cut(s) 164, 325, 397, 752, 1076, 1138
BseYI CCCAGC 1 cut(s) 677
BsgI GTGCAG 2 cut(s) 332, 689
Bsh1236I CGCG 2 cut(s) 285, 431
BshFI GGCC 5 cut(s) 99, 398, 620, 916, 976
BsiHKAI GWGCWC 2 cut(s) 9, 642
BsiSI CCGG 3 cut(s) 100, 342, 971
BslFI GGGAC 2 cut(s) 833, 916
BslI CCNNNNNNNGG 1 cut(s) 294
BsmAI GTCTC 1 cut(s) 472
BsmFI GGGAC 2 cut(s) 833, 916
BsnI GGCC 5 cut(s) 99, 398, 620, 916, 976
Bso31I GGTCTC 1 cut(s) 472
Bsp1286I GDGCHC 4 cut(s) 9, 255, 377, 642
Bsp13I TCCGGA 1 cut(s) 341
Bsp143I GATC 9 cut(s) 102, 159, 187, 215, 280, 363, 579, 631, 841
Bsp19I CCATGG 1 cut(s) 729
BspACI CCGC 2 cut(s) 204, 557
BspANI GGCC 5 cut(s) 99, 398, 620, 916, 976
BspCNI CTCAG 2 cut(s) 628, 976
BspEI TCCGGA 1 cut(s) 341
BspFNI CGCG 2 cut(s) 285, 431
BspLI GGNNCC 2 cut(s) 254, 975
BspMAI CTGCAG 1 cut(s) 1066
BspMI ACCTGC 1 cut(s) 711
BspPI GGATC 5 cut(s) 110, 223, 288, 626, 836
BspTNI GGTCTC 1 cut(s) 472
BsrI ACTGG 3 cut(s) 498, 805, 1048
BssECI CCNNGG 3 cut(s) 276, 729, 971
BssHII GCGCGC 1 cut(s) 429
BssMI GATC 9 cut(s) 102, 159, 187, 215, 280, 363, 579, 631, 841
BssNI GRCGYC 2 cut(s) 726, 980
BssT1I CCWWGG 1 cut(s) 729
Bst2UI CCWGG 2 cut(s) 327, 856
Bst4CI ACNGT 1 cut(s) 131
BstACI GRCGYC 2 cut(s) 726, 980
BstBAI YACGTR 1 cut(s) 1131
BstC8I GCNNGC 3 cut(s) 408, 431, 520
BstDEI CTNAG 2 cut(s) 636, 984
BstDSI CCRYGG 1 cut(s) 729
BstF5I GGATG 2 cut(s) 67, 1067
BstFNI CGCG 2 cut(s) 285, 431
BstHHI GCGC 3 cut(s) 287, 431, 433
BstKTI GATC 9 cut(s) 105, 162, 190, 218, 283, 366, 582, 634, 844
BstMAI GTCTC 1 cut(s) 472
BstMBI GATC 9 cut(s) 102, 159, 187, 215, 280, 363, 579, 631, 841
BstMWI GCNNNNNNNGC 3 cut(s) 439, 494, 749
BstNI CCWGG 2 cut(s) 327, 856
BstNSI RCATGY 1 cut(s) 721
BstSCI CCNGG 3 cut(s) 325, 854, 970
BstSFI CTRYAG 1 cut(s) 1062
BstSLI GKGCMC 1 cut(s) 377
BstUI CGCG 2 cut(s) 285, 431
BstV1I GCAGC 6 cut(s) 164, 325, 397, 752, 1076, 1138
BstV2I GAAGAC 2 cut(s) 25, 782
BstX2I RGATCY 2 cut(s) 363, 841
BstYI RGATCY 2 cut(s) 363, 841
BsuRI GGCC 5 cut(s) 99, 398, 620, 916, 976
BtgI CCRYGG 1 cut(s) 729
BtsCI GGATG 2 cut(s) 67, 1067
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 5 cut(s) 136, 274, 357, 375, 1041
BveI ACCTGC 1 cut(s) 711
Cac8I GCNNGC 3 cut(s) 408, 431, 520
CaiI CAGNNNCTG 1 cut(s) 488
CfoI GCGC 3 cut(s) 287, 431, 433
Cfr13I GGNCC 2 cut(s) 974, 1055
CseI GACGC 2 cut(s) 191, 734
CviAII CATG 4 cut(s) 289, 718, 730, 1176
DdeI CTNAG 2 cut(s) 636, 984
DpnI GATC 9 cut(s) 104, 161, 189, 217, 282, 365, 581, 633, 843
DpnII GATC 9 cut(s) 102, 159, 187, 215, 280, 363, 579, 631, 841
DraI TTTAAA 1 cut(s) 667
DraIII CACNNNGTG 1 cut(s) 133
DrdI GACNNNNNNGTC 1 cut(s) 1053
DseDI GACNNNNNNGTC 1 cut(s) 1053
EaeI YGGCCR 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 729
Eco147I AGGCCT 1 cut(s) 398
Eco24I GRGCYC 2 cut(s) 9, 255
Eco31I GGTCTC 1 cut(s) 472
Eco47I GGWCC 1 cut(s) 1055
Eco53kI GAGCTC 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 7
EcoO109I RGGNCCY 1 cut(s) 1055
EcoRII CCWGG 2 cut(s) 325, 854
EcoT14I CCWWGG 1 cut(s) 729
EcoT22I ATGCAT 2 cut(s) 67, 607
EcoT38I GRGCYC 2 cut(s) 9, 255
ErhI CCWWGG 1 cut(s) 729
FaeI CATG 4 cut(s) 292, 721, 733, 1179
FaqI GGGAC 2 cut(s) 833, 916
FatI CATG 4 cut(s) 288, 717, 729, 1175
FauNDI CATATG 1 cut(s) 82
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 6 cut(s) 153, 314, 411, 741, 1065, 1152
FokI GGATG 2 cut(s) 74, 1054
FriOI GRGCYC 2 cut(s) 9, 255
Fsp4HI GCNGC 6 cut(s) 153, 314, 411, 741, 1065, 1152
GlaI GCGC 3 cut(s) 286, 430, 432
GluI GCNGC 6 cut(s) 153, 314, 411, 741, 1065, 1152
GsaI CCCAGC 1 cut(s) 681
GsuI CTGGAG 1 cut(s) 776
HaeIII GGCC 5 cut(s) 99, 398, 620, 916, 976
HapII CCGG 3 cut(s) 100, 342, 971
HgaI GACGC 2 cut(s) 191, 734
HhaI GCGC 3 cut(s) 287, 431, 433
Hin1I GRCGYC 2 cut(s) 726, 980
Hin1II CATG 4 cut(s) 292, 721, 733, 1179
Hin6I GCGC 3 cut(s) 285, 429, 431
HinP1I GCGC 3 cut(s) 285, 429, 431
HincII GTYRAC 1 cut(s) 1173
HindII GTYRAC 1 cut(s) 1173
HindIII AAGCTT 1 cut(s) 933
HinfI GANTC 2 cut(s) 223, 682
HpaI GTTAAC 1 cut(s) 1173
HpaII CCGG 3 cut(s) 100, 342, 971
HphI GGTGA 2 cut(s) 114, 193
Hpy166II GTNNAC 5 cut(s) 91, 424, 476, 1041, 1173
Hpy188I TCNGA 4 cut(s) 484, 796, 985, 998
Hpy188III TCNNGA 8 cut(s) 163, 172, 191, 256, 342, 635, 686, 755
Hpy8I GTNNAC 5 cut(s) 91, 424, 476, 1041, 1173
Hpy99I CGWCG 3 cut(s) 185, 728, 982
HpyAV CCTTC 5 cut(s) 35, 129, 754, 892, 1068
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 2 cut(s) 980, 1130
HpyCH4V TGCA 7 cut(s) 65, 313, 522, 605, 706, 740, 1064
HpyF10VI GCNNNNNNNGC 3 cut(s) 439, 494, 749
HpyF3I CTNAG 2 cut(s) 636, 984
HpySE526I ACGT 2 cut(s) 980, 1130
Hsp92I GRCGYC 2 cut(s) 726, 980
Hsp92II CATG 4 cut(s) 292, 721, 733, 1179
HspAI GCGC 3 cut(s) 285, 429, 431
Kpn2I TCCGGA 1 cut(s) 341
Ksp22I TGATCA 1 cut(s) 187
KspAI GTTAAC 1 cut(s) 1173
Kzo9I GATC 9 cut(s) 102, 159, 187, 215, 280, 363, 579, 631, 841
LmnI GCTCC 4 cut(s) 4, 258, 836, 1017
Lsp1109I GCAGC 6 cut(s) 164, 325, 397, 752, 1076, 1138
LweI GCATC 5 cut(s) 52, 74, 727, 818, 1076
MaeII ACGT 2 cut(s) 980, 1130
MaeIII GTNAC 1 cut(s) 136
MalI GATC 9 cut(s) 104, 161, 189, 217, 282, 365, 581, 633, 843
MboI GATC 9 cut(s) 102, 159, 187, 215, 280, 363, 579, 631, 841
MboII GAAGA 7 cut(s) 25, 545, 562, 787, 904, 907, 1113
MflI RGATCY 2 cut(s) 363, 841
MhlI GDGCHC 4 cut(s) 9, 255, 377, 642
MluCI AATT 5 cut(s) 231, 292, 583, 961, 1084
MmeI TCCRAC 1 cut(s) 217
Mph1103I ATGCAT 2 cut(s) 67, 607
MroI TCCGGA 1 cut(s) 341
MseI TTAA 4 cut(s) 666, 1083, 1166, 1172
MslI CAYNNNNRTG 2 cut(s) 380, 1129
MspI CCGG 3 cut(s) 100, 342, 971
MspR9I CCNGG 3 cut(s) 327, 856, 972
MvaI CCWGG 2 cut(s) 327, 856
MvnI CGCG 2 cut(s) 285, 431
MwoI GCNNNNNNNGC 3 cut(s) 439, 494, 749
NciI CCSGG 1 cut(s) 972
NcoI CCATGG 1 cut(s) 729
NdeI CATATG 1 cut(s) 82
NdeII GATC 9 cut(s) 102, 159, 187, 215, 280, 363, 579, 631, 841
NlaIII CATG 4 cut(s) 292, 721, 733, 1179
NlaIV GGNNCC 2 cut(s) 254, 975
NmeAIII GCCGAG 1 cut(s) 301
NsiI ATGCAT 2 cut(s) 67, 607
NspI RCATGY 1 cut(s) 721
OliI CACNNNNGTG 2 cut(s) 380, 1129
PauI GCGCGC 1 cut(s) 429
PceI AGGCCT 1 cut(s) 398
PciI ACATGT 1 cut(s) 717
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PfeI GAWTC 2 cut(s) 223, 682
PflMI CCANNNNNTGG 1 cut(s) 294
PfoI TCCNGGA 1 cut(s) 325
PkrI GCNGC 6 cut(s) 154, 315, 412, 742, 1066, 1153
Ppu21I YACGTR 1 cut(s) 1131
PpuMI RGGWCCY 1 cut(s) 1055
PscI ACATGT 1 cut(s) 717
Psp124BI GAGCTC 1 cut(s) 9
Psp5II RGGWCCY 1 cut(s) 1055
Psp6I CCWGG 2 cut(s) 325, 854
PspFI CCCAGC 1 cut(s) 677
PspGI CCWGG 2 cut(s) 325, 854
PspN4I GGNNCC 2 cut(s) 254, 975
PspPI GGNCC 2 cut(s) 974, 1055
PspPPI RGGWCCY 1 cut(s) 1055
PstI CTGCAG 1 cut(s) 1066
PstNI CAGNNNCTG 1 cut(s) 488
PsuI RGATCY 2 cut(s) 363, 841
PteI GCGCGC 1 cut(s) 429
RseI CAYNNNNRTG 2 cut(s) 380, 1129
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 4 cut(s) 666, 1083, 1166, 1172
SatI GCNGC 6 cut(s) 153, 314, 411, 741, 1065, 1152
Sau3AI GATC 9 cut(s) 102, 159, 187, 215, 280, 363, 579, 631, 841
Sau96I GGNCC 2 cut(s) 974, 1055
ScrFI CCNGG 3 cut(s) 327, 856, 972
SduI GDGCHC 4 cut(s) 9, 255, 377, 642
SfaNI GCATC 5 cut(s) 52, 74, 727, 818, 1076
SfcI CTRYAG 1 cut(s) 1062
SinI GGWCC 1 cut(s) 1055
SmiMI CAYNNNNRTG 2 cut(s) 380, 1129
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
Sse9I AATT 5 cut(s) 231, 292, 583, 961, 1084
SseBI AGGCCT 1 cut(s) 398
SsiI CCGC 2 cut(s) 204, 557
SstI GAGCTC 1 cut(s) 9
StuI AGGCCT 1 cut(s) 398
StyD4I CCNGG 3 cut(s) 325, 854, 970
StyI CCWWGG 1 cut(s) 729
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 2 cut(s) 983, 1133
TaqI TCGA 2 cut(s) 723, 1105
TasI AATT 5 cut(s) 231, 292, 583, 961, 1084
TfiI GAWTC 2 cut(s) 223, 682
Tru1I TTAA 4 cut(s) 666, 1083, 1166, 1172
Tru9I TTAA 4 cut(s) 666, 1083, 1166, 1172
TscAI CASTG 5 cut(s) 136, 274, 357, 382, 1048
TseI GCWGC 6 cut(s) 152, 313, 410, 740, 1064, 1151
TspDTI ATGAA 4 cut(s) 305, 318, 843, 905
TspRI CASTG 5 cut(s) 136, 274, 357, 382, 1048
Van91I CCANNNNNTGG 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 1055
XapI RAATTY 1 cut(s) 961
XceI RCATGY 1 cut(s) 721
ZraI GACGTC 1 cut(s) 981
Zsp2I ATGCAT 2 cut(s) 67, 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.