Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0015223

Physical Location & Seq

Genomic Coordinates Reverse (-)

50432016 .. 50433826

Gene Structure 1811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G030720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGAATGCTCTTTCATCGTTAATATTCCCAAAAGACAAATGGAGTGCTTCTCTTCCTCCCTCCGGTTGCTTCTTCTCTTCACCATCAGTACTTCATTTCTCAGTGTTGATGCAACGTTTACTGGAACATATGGAGTAAACTATGGCAGGATAGCAGACAACATACCATCACCTCATAGTGTGGTGACACTTCTCAAAGCAGCGAAGATCAAGAACATCAGAATATATGATGCTGTACCTGAAGTCCTCACAGCCTTCAAGGGATCAGGAATCGAAATAGTTGTTGGACTTGGCAATGATTTGCTTAAGGAAATCAGCATAGCCGAGGATCGTGCCACGACTTGGATCAAAGAGAAGGTCCAGCCATACCTACCAGGGACTCACATTTCCGGAATAGCAGTCGGGAATGAGATCTTGGGGGGGACTGATAATGTGTATAGTGCTCTTGACCAGCTTGGTTTGGCTAGCAGCATTGAGGTCTCAAGTCCACATTCTGAGGCTGTTTTTGCCAATTCTTACCCACCATCTGCTTGCATTTTTAGAGAAGATATTGCTGGTTACATGAAGCCACTTCTGGAGTTCTTTTCGCAGATTAAATCTCCGTTTTACATAAACGCATATCCATTCCTTGCTTATAAGAGTGACCCTGAGCACATTAACCTCAACTATGCTCTATTCAAGTCAAATCCCGGAATTCTAGACACAAAGACTAATCTCCACTATGACAACATGTTCGATGCCATGGTTGATGCATCTTATTTCGCTTTGGAGAAGGCTGGATATGACAAGATGGAAGTCATAGTATCCGAAACTGGTTGGGCATCCAAGGGGGACCCAGATGAAGCAGGAGCAGATGTGAAAAATGCCAGGACTTACAACTTGAATTTGAAGAAAAGGCTGGCCAAGAAGAAGGGGACTCCTCATAGACCAAAGATGGTGGTGAAAGCCTACATTTTTGCTTTGTTCAATGAGAATTTGAAACCGGGGCCAACGTCTGAGAGGAATTTCGGATTGTTCAAAGCAGATGGGAGCATTTCGTATGACATTGGGTTCACTGGACTTGTTGCACCAAACGCAGCATCCTCATCTCTTCTTAATTACAAGGGCACGGGATTTCGAGGTTGGTTTCAATCTTCGCATACCTGGGTTTTCACAAGTTGTGCTGCTGTTCTGCTTCTAATGTTATCGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

397

Amino Acids

43.57

Weight (kDa)

7.05

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	45 - 351	4.7e-78	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15800
fragaria_vesca	FvH4_6g29810
malus_domestica	MD00G1122900.v1.1 MD17G1210800.v1.1
prunus_persica	Prupe.3G086200_v2.0.a1
pyrus_communis	pycom09g14110 pycom17g21580
rosa_chinensis	RchiOBHm_Chr2g0135631
rosa_laevigata	RLG00000019473
rosa_multiflora	Rmu_sc0002398.1_g000035
rosa_roxburghii	Rroxscaffold_2G00109030
rosa_rugosa	Rorug02G0325300
rosa_samantha	Rh2AG376700 Rh2BG383000 Rh2DG399100
rosa_wichuraiana	Rw2G030720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	636
AccB7I	CCANNNNNTGG	1 cut(s)	342
AccIII	TCCGGA	1 cut(s)	389
AclI	AACGTT	1 cut(s)	116
AclWI	GGATC	3 cut(s)	271, 336, 353
AcoI	YGGCCR	1 cut(s)	900
AcsI	RAATTY	4 cut(s)	693, 883, 973, 1003
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	2 cut(s)	91, 237
AfiI	CCNNNNNNNGG	2 cut(s)	63, 342
AflII	CTTAAG	1 cut(s)	305
AflIII	ACRYGT	1 cut(s)	729
AgsI	TTSAA	8 cut(s)	259, 679, 883, 889, 967, 979, 1018, 1130
AjnI	CCWGG	3 cut(s)	373, 866, 1142
AjuI	GAANNNNNNNTTGG	4 cut(s)	267, 299, 398, 430
AluBI	AGCT	1 cut(s)	454
AluI	AGCT	1 cut(s)	454
Alw21I	GWGCWC	2 cut(s)	445, 654
Alw26I	GTCTC	1 cut(s)	484
AlwI	GGATC	3 cut(s)	271, 336, 353
Aor13HI	TCCGGA	1 cut(s)	389
AoxI	GGCC	2 cut(s)	900, 986
ApeKI	GCWGC	4 cut(s)	200, 468, 1076, 1163
ApoI	RAATTY	4 cut(s)	693, 883, 973, 1003
ArsI	GACNNNNNNTTYG	4 cut(s)	342, 374, 716, 748
AspS9I	GGNCC	3 cut(s)	358, 832, 986
AsuC2I	CCSGG	2 cut(s)	690, 984
AsuHPI	GGTGA	4 cut(s)	73, 162, 196, 952
AsuNHI	GCTAGC	1 cut(s)	464
AvaII	GGWCC	2 cut(s)	358, 832
BaeGI	GKGCMC	1 cut(s)	1109
BalI	TGGCCA	1 cut(s)	902
Bbv12I	GWGCWC	2 cut(s)	445, 654
BbvI	GCAGC	4 cut(s)	212, 480, 1088, 1150
BccI	CCATC	6 cut(s)	92, 175, 532, 784, 928, 1019
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BciT130I	CCWGG	3 cut(s)	375, 868, 1144
BciVI	GTATCC	1 cut(s)	814
BcnI	CCSGG	2 cut(s)	690, 984
BcoDI	GTCTC	1 cut(s)	484
BfaI	CTAG	2 cut(s)	465, 698
BfrI	CTTAAG	1 cut(s)	305
BfuI	GTATCC	1 cut(s)	814
BglII	AGATCT	1 cut(s)	411
BisI	GCNGC	4 cut(s)	201, 469, 1077, 1164
BlsI	GCNGC	4 cut(s)	202, 470, 1078, 1165
BmcAI	AGTACT	1 cut(s)	91
Bme1390I	CCNGG	5 cut(s)	375, 690, 868, 984, 1144
Bme18I	GGWCC	2 cut(s)	358, 832
BmgT120I	GGNCC	3 cut(s)	358, 832, 986
BmiI	GGNNCC	3 cut(s)	833, 834, 987
BmrFI	CCNGG	5 cut(s)	375, 690, 868, 984, 1144
BmsI	GCATC	7 cut(s)	100, 220, 727, 739, 761, 830, 1088
BmtI	GCTAGC	1 cut(s)	468
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
BpmI	CTGGAG	1 cut(s)	596
Bpu10I	CCTNAGC	1 cut(s)	648
BpuEI	CTTGAG	1 cut(s)	466
BpuMI	CCSGG	2 cut(s)	690, 984
BsaI	GGTCTC	1 cut(s)	484
BsaJI	CCNNGG	6 cut(s)	324, 374, 741, 825, 983, 1143
BsaWI	WCCGGW	2 cut(s)	63, 389
BsaXI	ACNNNNNCTCC	2 cut(s)	840, 870
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 342
Bse1I	ACTGG	3 cut(s)	127, 817, 1060
Bse3DI	GCAATG	1 cut(s)	301
BseAI	TCCGGA	1 cut(s)	389
BseBI	CCWGG	3 cut(s)	375, 868, 1144
BseDI	CCNNGG	6 cut(s)	324, 374, 741, 825, 983, 1143
BseGI	GGATG	2 cut(s)	821, 1079
BseLI	CCNNNNNNNGG	2 cut(s)	63, 342
BseMI	GCAATG	1 cut(s)	301
BseMII	CTCAG	4 cut(s)	115, 486, 639, 987
BseNI	ACTGG	3 cut(s)	127, 817, 1060
BseRI	GAGGAG	1 cut(s)	909
BseSI	GKGCMC	1 cut(s)	1109
BseXI	GCAGC	4 cut(s)	212, 480, 1088, 1150
BshFI	GGCC	2 cut(s)	902, 988
BsiHKAI	GWGCWC	2 cut(s)	445, 654
BsiSI	CCGG	4 cut(s)	64, 390, 690, 983
BslFI	GGGAC	4 cut(s)	391, 436, 845, 928
BslI	CCNNNNNNNGG	2 cut(s)	63, 342
BsmAI	GTCTC	1 cut(s)	484
BsmFI	GGGAC	4 cut(s)	391, 436, 845, 928
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	2 cut(s)	902, 988
Bso31I	GGTCTC	1 cut(s)	484
Bsp1286I	GDGCHC	3 cut(s)	445, 654, 1109
Bsp13I	TCCGGA	1 cut(s)	389
Bsp143I	GATC	5 cut(s)	207, 263, 328, 345, 411
Bsp19I	CCATGG	1 cut(s)	741
BspANI	GGCC	2 cut(s)	902, 988
BspCNI	CTCAG	4 cut(s)	114, 487, 640, 988
BspEI	TCCGGA	1 cut(s)	389
BspLI	GGNNCC	3 cut(s)	833, 834, 987
BspOI	GCTAGC	1 cut(s)	468
BspPI	GGATC	3 cut(s)	271, 336, 353
BspTI	CTTAAG	1 cut(s)	305
BspTNI	GGTCTC	1 cut(s)	484
BsrDI	GCAATG	1 cut(s)	301
BsrI	ACTGG	3 cut(s)	127, 817, 1060
BssECI	CCNNGG	6 cut(s)	324, 374, 741, 825, 983, 1143
BssMI	GATC	5 cut(s)	207, 263, 328, 345, 411
BssT1I	CCWWGG	2 cut(s)	741, 825
Bst2UI	CCWGG	3 cut(s)	375, 868, 1144
Bst6I	CTCTTC	3 cut(s)	58, 83, 1095
BstAFI	CTTAAG	1 cut(s)	305
BstC8I	GCNNGC	3 cut(s)	466, 532, 900
BstDEI	CTNAG	4 cut(s)	101, 495, 648, 996
BstDSI	CCRYGG	1 cut(s)	741
BstF5I	GGATG	2 cut(s)	821, 1079
BstKTI	GATC	5 cut(s)	210, 266, 331, 348, 414
BstMAI	GTCTC	1 cut(s)	484
BstMBI	GATC	5 cut(s)	207, 263, 328, 345, 411
BstMWI	GCNNNNNNNGC	2 cut(s)	506, 1073
BstNI	CCWGG	3 cut(s)	375, 868, 1144
BstNSI	RCATGY	1 cut(s)	733
BstSCI	CCNGG	5 cut(s)	373, 688, 866, 982, 1142
BstSLI	GKGCMC	1 cut(s)	1109
BstV1I	GCAGC	4 cut(s)	212, 480, 1088, 1150
BstX2I	RGATCY	1 cut(s)	411
BstYI	RGATCY	1 cut(s)	411
BsuI	GTATCC	1 cut(s)	814
BsuRI	GGCC	2 cut(s)	902, 988
BtgI	CCRYGG	1 cut(s)	741
BtsCI	GGATG	2 cut(s)	821, 1079
BtsIMutI	CAGTG	2 cut(s)	109, 1053
Cac8I	GCNNGC	3 cut(s)	466, 532, 900
Cfr13I	GGNCC	3 cut(s)	358, 832, 986
Csp6I	GTAC	2 cut(s)	90, 236
CspCI	CAANNNNNGTGG	2 cut(s)	918, 953
CviAII	CATG	3 cut(s)	562, 730, 742
CviQI	GTAC	2 cut(s)	90, 236
DdeI	CTNAG	4 cut(s)	101, 495, 648, 996
DpnI	GATC	5 cut(s)	209, 265, 330, 347, 413
DpnII	GATC	5 cut(s)	207, 263, 328, 345, 411
EaeI	YGGCCR	1 cut(s)	900
Eam1104I	CTCTTC	3 cut(s)	58, 83, 1095
EarI	CTCTTC	3 cut(s)	58, 83, 1095
Eco130I	CCWWGG	2 cut(s)	741, 825
Eco31I	GGTCTC	1 cut(s)	484
Eco47I	GGWCC	2 cut(s)	358, 832
Eco57I	CTGAAG	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	832
EcoRI	GAATTC	1 cut(s)	693
EcoRII	CCWGG	3 cut(s)	373, 866, 1142
EcoT14I	CCWWGG	2 cut(s)	741, 825
EcoT22I	ATGCAT	1 cut(s)	754
ErhI	CCWWGG	2 cut(s)	741, 825
FaeI	CATG	3 cut(s)	565, 733, 745
FaqI	GGGAC	4 cut(s)	391, 436, 845, 928
FatI	CATG	3 cut(s)	561, 729, 741
FauNDI	CATATG	1 cut(s)	130
Fnu4HI	GCNGC	4 cut(s)	201, 469, 1077, 1164
FokI	GGATG	2 cut(s)	808, 1066
Fsp4HI	GCNGC	4 cut(s)	201, 469, 1077, 1164
FspBI	CTAG	2 cut(s)	465, 698
GluI	GCNGC	4 cut(s)	201, 469, 1077, 1164
GsuI	CTGGAG	1 cut(s)	596
HaeIII	GGCC	2 cut(s)	902, 988
HapII	CCGG	4 cut(s)	64, 390, 690, 983
Hin1II	CATG	3 cut(s)	565, 733, 745
HinfI	GANTC	3 cut(s)	270, 379, 916
HpaII	CCGG	4 cut(s)	64, 390, 690, 983
HphI	GGTGA	4 cut(s)	73, 162, 196, 952
Hpy166II	GTNNAC	4 cut(s)	120, 139, 488, 1053
Hpy188I	TCNGA	5 cut(s)	221, 496, 808, 997, 1010
Hpy188III	TCNNGA	7 cut(s)	211, 267, 390, 403, 446, 575, 698
Hpy8I	GTNNAC	4 cut(s)	120, 139, 488, 1053
HpyAV	CCTTC	4 cut(s)	265, 349, 766, 904
HpyCH4IV	ACGT	2 cut(s)	116, 992
HpyCH4V	TGCA	4 cut(s)	113, 534, 752, 1067
HpyF10VI	GCNNNNNNNGC	2 cut(s)	506, 1073
HpyF3I	CTNAG	4 cut(s)	101, 495, 648, 996
HpySE526I	ACGT	2 cut(s)	116, 992
Hsp92II	CATG	3 cut(s)	565, 733, 745
KflI	GGGWCCC	1 cut(s)	832
Kpn2I	TCCGGA	1 cut(s)	389
Kzo9I	GATC	5 cut(s)	207, 263, 328, 345, 411
LmnI	GCTCC	2 cut(s)	848, 1029
Lsp1109I	GCAGC	4 cut(s)	212, 480, 1088, 1150
LweI	GCATC	7 cut(s)	100, 220, 727, 739, 761, 830, 1088
MaeI	CTAG	2 cut(s)	465, 698
MaeII	ACGT	2 cut(s)	116, 992
MaeIII	GTNAC	3 cut(s)	184, 557, 641
MalI	GATC	5 cut(s)	209, 265, 330, 347, 413
MboI	GATC	5 cut(s)	207, 263, 328, 345, 411
MboII	GAAGA	9 cut(s)	45, 65, 70, 217, 557, 901, 919, 1082, 1125
MflI	RGATCY	1 cut(s)	411
MhlI	GDGCHC	3 cut(s)	445, 654, 1109
MlsI	TGGCCA	1 cut(s)	902
MluCI	AATT	6 cut(s)	511, 693, 883, 973, 1003, 1096
MluNI	TGGCCA	1 cut(s)	902
MlyI	GAGTC	2 cut(s)	373, 910
MmeI	TCCRAC	1 cut(s)	265
Mox20I	TGGCCA	1 cut(s)	902
Mph1103I	ATGCAT	1 cut(s)	754
MroI	TCCGGA	1 cut(s)	389
MscI	TGGCCA	1 cut(s)	902
MseI	TTAA	5 cut(s)	21, 306, 594, 657, 1095
Msp20I	TGGCCA	1 cut(s)	902
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	4 cut(s)	64, 390, 690, 983
MspR9I	CCNGG	5 cut(s)	375, 690, 868, 984, 1144
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	3 cut(s)	375, 868, 1144
MwoI	GCNNNNNNNGC	2 cut(s)	506, 1073
NciI	CCSGG	2 cut(s)	690, 984
NcoI	CCATGG	1 cut(s)	741
NdeI	CATATG	1 cut(s)	130
NdeII	GATC	5 cut(s)	207, 263, 328, 345, 411
NheI	GCTAGC	1 cut(s)	464
NlaIII	CATG	3 cut(s)	565, 733, 745
NlaIV	GGNNCC	3 cut(s)	833, 834, 987
NmeAIII	GCCGAG	1 cut(s)	349
NmuCI	GTSAC	2 cut(s)	184, 641
NsiI	ATGCAT	1 cut(s)	754
NspI	RCATGY	1 cut(s)	733
PciI	ACATGT	1 cut(s)	729
PctI	GAATGC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	270
PflMI	CCANNNNNTGG	1 cut(s)	342
PfoI	TCCNGGA	1 cut(s)	688
PkrI	GCNGC	4 cut(s)	202, 470, 1078, 1165
PleI	GAGTC	2 cut(s)	373, 910
PpsI	GAGTC	2 cut(s)	373, 910
PpuMI	RGGWCCY	1 cut(s)	832
PscI	ACATGT	1 cut(s)	729
PsiI	TTATAA	1 cut(s)	636
Psp1406I	AACGTT	1 cut(s)	116
Psp5II	RGGWCCY	1 cut(s)	832
Psp6I	CCWGG	3 cut(s)	373, 866, 1142
PspGI	CCWGG	3 cut(s)	373, 866, 1142
PspN4I	GGNNCC	3 cut(s)	833, 834, 987
PspPI	GGNCC	3 cut(s)	358, 832, 986
PspPPI	RGGWCCY	1 cut(s)	832
PsuI	RGATCY	1 cut(s)	411
RsaI	GTAC	2 cut(s)	91, 237
RsaNI	GTAC	2 cut(s)	90, 236
SaqAI	TTAA	5 cut(s)	21, 306, 594, 657, 1095
SatI	GCNGC	4 cut(s)	201, 469, 1077, 1164
Sau3AI	GATC	5 cut(s)	207, 263, 328, 345, 411
Sau96I	GGNCC	3 cut(s)	358, 832, 986
ScaI	AGTACT	1 cut(s)	91
SchI	GAGTC	2 cut(s)	373, 910
ScrFI	CCNGG	5 cut(s)	375, 690, 868, 984, 1144
SduI	GDGCHC	3 cut(s)	445, 654, 1109
SfaNI	GCATC	7 cut(s)	100, 220, 727, 739, 761, 830, 1088
SinI	GGWCC	2 cut(s)	358, 832
SmlI	CTYRAG	2 cut(s)	305, 481
SmoI	CTYRAG	2 cut(s)	305, 481
Sse9I	AATT	6 cut(s)	511, 693, 883, 973, 1003, 1096
SspI	AATATT	1 cut(s)	25
SspMI	CTAG	2 cut(s)	465, 698
StyD4I	CCNGG	5 cut(s)	373, 688, 866, 982, 1142
StyI	CCWWGG	2 cut(s)	741, 825
TaiI	ACGT	2 cut(s)	119, 995
TaqI	TCGA	3 cut(s)	273, 735, 1117
TasI	AATT	6 cut(s)	511, 693, 883, 973, 1003, 1096
TatI	WGTACW	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	5 cut(s)	21, 306, 594, 657, 1095
Tru9I	TTAA	5 cut(s)	21, 306, 594, 657, 1095
TscAI	CASTG	2 cut(s)	109, 1060
TseFI	GTSAC	2 cut(s)	184, 641
TseI	GCWGC	4 cut(s)	200, 468, 1076, 1163
Tsp45I	GTSAC	2 cut(s)	184, 641
TspDTI	ATGAA	4 cut(s)	4, 84, 578, 855
TspGWI	ACGGA	1 cut(s)	591
TspRI	CASTG	2 cut(s)	109, 1060
Van91I	CCANNNNNTGG	1 cut(s)	342
Vha464I	CTTAAG	1 cut(s)	305
VpaK11BI	GGWCC	2 cut(s)	358, 832
XapI	RAATTY	4 cut(s)	693, 883, 973, 1003
XbaI	TCTAGA	1 cut(s)	697
XceI	RCATGY	1 cut(s)	733
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XspI	CTAG	2 cut(s)	465, 698
ZrmI	AGTACT	1 cut(s)	91
Zsp2I	ATGCAT	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.