FvH4_6g29810

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015223
Physical Location & Seq
Reverse (-)
23037578 .. 23039684
2107 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29810.t1

Sequence Viewer

Length: 1233 bp
ATGGGACACTCTTCCATCGTTAATATTCCCAAAACACAAATGGAGTGCTTATCTTCCTCCCTCTGCTTTCTTCTTCTCTTCACCATCAGTACTTCATTTCTCAATGTTGATGCAACGTTTACTGGAACATATGGAGTAAACTATGGCAGGTTAGCGGACAACATACCATCACCTCATAGTGTGGTGACACTTCTCAAAGCAGCAAAGATCAAGAACATCAGAATATATGATGCTGCACCCGAAGTCCTCACCGCATTCAAGGGATCAGGAATCGAAATAGTAGTTGGACTTGGCACTGAGTTCCTCAAGGAAATCAGCATAGGGGAGGATCGCGCCATAACTTGGATCAAAGAGAATGTCCAGCCATACCTACCAGGGACTCACATTTCCGGAATAGCAGTCGGAAATGAGATCTTGGGGGCACCTGATAGGGTACTCTGGGAGGTCTTGTTGCCTGCAGTGAAGAATGTTTACAGTGCTCTTGGCCAGCTTGGTTTGGCTAGCAGCATTGAGGTCTCAAGTCCACATTCTGAGGCTGTTTTCGCCAATTCTTACCCACCATCTGCTTGCATTTTCAAAGAAGATATTGCCGGTTACATGAAGCCACTTTTGGAGTTCTTTTCGCAGATTAAATCTCCGTTTTACATAAACGCATATCCATTCCTGGCTTATAAGAGTGACCCTGAGCACATTAACCTCAACTATGCTCTATTCAAGTCAAATCCCGGAATTCTAGACACAAAGACTAATCTCCACTATGACAACATGTTTGATGCCATGGTTGATGCATCTTATTTTGCTTTGGAGAAGGCTGGATATGACAAGATGGAAGTCATAGTATCCGAAACTGGTTGGGCATCTAAGGGGGACCAAGATGAAGCAGGAGCAGATGCACAAAATGCCAGGACTTACAACCTGAATTTGAAGAAAAGGCTGGCCAAGAAGAAGGGGACTCCTCATAGGCCAAAGATGGTGGTGAAAGCTTATATATTTGCTTTGTTCAATGAGAACTTGAAACCGGGGCCAACGTCTGAGAGGAATTTCGGATTGTTTAAAGCAGATGGGAGCATTTCGTATGACATTGGGTTCACTGGACTTGTTGCACCAAATGCAGCATCCTCATCTCTTCTTAATTACAAGGGCATGGGATTTCGAGGTTGGTTTCATTCTTCACATACCTGGGTTTTCACAAGTTGTGCTGCTGTTCTGCTTCTGATATTATCGTCCACGTAA

Protein Analysis

411

Amino Acids

44.84

Weight (kDa)

6.76

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 45 - 363 2.5e-81 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015223)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15800
fragaria_vesca FvH4_6g29810
malus_domestica MD00G1122900.v1.1 MD17G1210800.v1.1
prunus_persica Prupe.3G086200_v2.0.a1
pyrus_communis pycom09g14110 pycom17g21580
rosa_chinensis RchiOBHm_Chr2g0135631
rosa_laevigata RLG00000019473
rosa_multiflora Rmu_sc0002398.1_g000035
rosa_roxburghii Rroxscaffold_2G00109030
rosa_rugosa Rorug02G0325300
rosa_samantha Rh2AG376700 Rh2BG383000 Rh2DG399100
rosa_wichuraiana Rw2G030720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 672
Acc36I ACCTGC 1 cut(s) 138
AccB1I GGYRCC 1 cut(s) 421
AccB7I CCANNNNNTGG 1 cut(s) 342
AccII CGCG 1 cut(s) 333
AccIII TCCGGA 1 cut(s) 389
AciI CCGC 2 cut(s) 155, 252
AclI AACGTT 1 cut(s) 116
AclWI GGATC 3 cut(s) 271, 336, 353
AcoI YGGCCR 2 cut(s) 484, 936
AcsI RAATTY 3 cut(s) 729, 919, 1039
AfaI GTAC 2 cut(s) 91, 435
AfiI CCNNNNNNNGG 1 cut(s) 342
AflIII ACRYGT 1 cut(s) 765
AgsI TTSAA 6 cut(s) 259, 577, 715, 925, 1003, 1015
AjnI CCWGG 4 cut(s) 373, 663, 902, 1178
AjuI GAANNNNNNNTTGG 4 cut(s) 267, 299, 593, 625
AluBI AGCT 2 cut(s) 490, 983
AluI AGCT 2 cut(s) 490, 983
Alw21I GWGCWC 2 cut(s) 481, 690
Alw26I GTCTC 1 cut(s) 520
AlwI GGATC 3 cut(s) 271, 336, 353
Aor13HI TCCGGA 1 cut(s) 389
AoxI GGCC 4 cut(s) 484, 936, 962, 1022
ApeKI GCWGC 5 cut(s) 200, 233, 504, 1112, 1199
ApoI RAATTY 3 cut(s) 729, 919, 1039
ArsI GACNNNNNNTTYG 4 cut(s) 342, 374, 752, 784
AspLEI GCGC 1 cut(s) 335
AspS9I GGNCC 2 cut(s) 868, 1022
AsuC2I CCSGG 2 cut(s) 726, 1020
AsuHPI GGTGA 5 cut(s) 73, 162, 196, 241, 988
AsuNHI GCTAGC 1 cut(s) 500
AvaII GGWCC 1 cut(s) 868
BaeGI GKGCMC 1 cut(s) 424
BalI TGGCCA 2 cut(s) 486, 938
BanI GGYRCC 1 cut(s) 421
BarI GAAGNNNNNNTAC 2 cut(s) 455, 487
Bbv12I GWGCWC 2 cut(s) 481, 690
BbvI GCAGC 5 cut(s) 212, 220, 516, 1124, 1186
BccI CCATC 7 cut(s) 23, 92, 175, 568, 820, 964, 1055
BciT130I CCWGG 4 cut(s) 375, 665, 904, 1180
BciVI GTATCC 1 cut(s) 850
BcnI CCSGG 2 cut(s) 726, 1020
BcoDI GTCTC 1 cut(s) 520
BfaI CTAG 2 cut(s) 501, 734
BfmI CTRYAG 1 cut(s) 456
BfuAI ACCTGC 1 cut(s) 138
BfuI GTATCC 1 cut(s) 850
BglII AGATCT 1 cut(s) 411
BisI GCNGC 5 cut(s) 201, 234, 505, 1113, 1200
BlsI GCNGC 5 cut(s) 202, 235, 506, 1114, 1201
BmcAI AGTACT 1 cut(s) 91
Bme1390I CCNGG 6 cut(s) 375, 665, 726, 904, 1020, 1180
Bme18I GGWCC 1 cut(s) 868
BmgT120I GGNCC 2 cut(s) 868, 1022
BmiI GGNNCC 3 cut(s) 423, 869, 1023
BmrFI CCNGG 6 cut(s) 375, 665, 726, 904, 1020, 1180
BmsI GCATC 8 cut(s) 100, 220, 763, 775, 797, 866, 880, 1124
BmtI GCTAGC 1 cut(s) 504
Bpu10I CCTNAGC 1 cut(s) 684
BpuEI CTTGAG 2 cut(s) 290, 502
BpuMI CCSGG 2 cut(s) 726, 1020
BsaAI YACGTR 1 cut(s) 1230
BsaI GGTCTC 1 cut(s) 520
BsaJI CCNNGG 4 cut(s) 374, 777, 1019, 1179
BsaWI WCCGGW 1 cut(s) 389
BsaXI ACNNNNNCTCC 2 cut(s) 434, 464
Bsc4I CCNNNNNNNGG 1 cut(s) 342
Bse118I RCCGGY 1 cut(s) 590
Bse1I ACTGG 3 cut(s) 127, 853, 1096
BseAI TCCGGA 1 cut(s) 389
BseBI CCWGG 4 cut(s) 375, 665, 904, 1180
BseDI CCNNGG 4 cut(s) 374, 777, 1019, 1179
BseGI GGATG 1 cut(s) 1115
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMII CTCAG 4 cut(s) 288, 522, 675, 1023
BseNI ACTGG 3 cut(s) 127, 853, 1096
BseRI GAGGAG 1 cut(s) 945
BseSI GKGCMC 1 cut(s) 424
BseXI GCAGC 5 cut(s) 212, 220, 516, 1124, 1186
BsgI GTGCAG 1 cut(s) 219
Bsh1236I CGCG 1 cut(s) 333
BshFI GGCC 4 cut(s) 486, 938, 964, 1024
BshNI GGYRCC 1 cut(s) 421
BsiHKAI GWGCWC 2 cut(s) 481, 690
BsiSI CCGG 4 cut(s) 390, 591, 726, 1019
BslFI GGGAC 4 cut(s) 18, 391, 881, 964
BslI CCNNNNNNNGG 1 cut(s) 342
BsmAI GTCTC 1 cut(s) 520
BsmFI GGGAC 4 cut(s) 18, 391, 881, 964
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 4 cut(s) 486, 938, 964, 1024
Bso31I GGTCTC 1 cut(s) 520
Bsp1286I GDGCHC 3 cut(s) 424, 481, 690
Bsp13I TCCGGA 1 cut(s) 389
Bsp143I GATC 5 cut(s) 207, 263, 328, 345, 411
Bsp19I CCATGG 1 cut(s) 777
BspACI CCGC 2 cut(s) 155, 252
BspANI GGCC 4 cut(s) 486, 938, 964, 1024
BspCNI CTCAG 4 cut(s) 289, 523, 676, 1024
BspEI TCCGGA 1 cut(s) 389
BspFNI CGCG 1 cut(s) 333
BspLI GGNNCC 3 cut(s) 423, 869, 1023
BspMAI CTGCAG 1 cut(s) 460
BspMI ACCTGC 1 cut(s) 138
BspOI GCTAGC 1 cut(s) 504
BspPI GGATC 3 cut(s) 271, 336, 353
BspT107I GGYRCC 1 cut(s) 421
BspTNI GGTCTC 1 cut(s) 520
BsrFI RCCGGY 1 cut(s) 590
BsrI ACTGG 3 cut(s) 127, 853, 1096
BssAI RCCGGY 1 cut(s) 590
BssECI CCNNGG 4 cut(s) 374, 777, 1019, 1179
BssMI GATC 5 cut(s) 207, 263, 328, 345, 411
BssT1I CCWWGG 1 cut(s) 777
Bst2UI CCWGG 4 cut(s) 375, 665, 904, 1180
Bst4CI ACNGT 1 cut(s) 476
Bst6I CTCTTC 3 cut(s) 16, 83, 1131
BstAPI GCANNNNNTGC 2 cut(s) 899, 1109
BstBAI YACGTR 1 cut(s) 1230
BstC8I GCNNGC 5 cut(s) 456, 488, 502, 568, 936
BstDEI CTNAG 5 cut(s) 297, 531, 684, 861, 1032
BstDSI CCRYGG 1 cut(s) 777
BstF5I GGATG 1 cut(s) 1115
BstFNI CGCG 1 cut(s) 333
BstHHI GCGC 1 cut(s) 335
BstKTI GATC 5 cut(s) 210, 266, 331, 348, 414
BstMAI GTCTC 1 cut(s) 520
BstMBI GATC 5 cut(s) 207, 263, 328, 345, 411
BstMWI GCNNNNNNNGC 3 cut(s) 542, 899, 1109
BstNI CCWGG 4 cut(s) 375, 665, 904, 1180
BstNSI RCATGY 1 cut(s) 769
BstSCI CCNGG 6 cut(s) 373, 663, 724, 902, 1018, 1178
BstSFI CTRYAG 1 cut(s) 456
BstSLI GKGCMC 1 cut(s) 424
BstUI CGCG 1 cut(s) 333
BstV1I GCAGC 5 cut(s) 212, 220, 516, 1124, 1186
BstX2I RGATCY 1 cut(s) 411
BstYI RGATCY 1 cut(s) 411
BsuI GTATCC 1 cut(s) 850
BsuRI GGCC 4 cut(s) 486, 938, 964, 1024
BtgI CCRYGG 1 cut(s) 777
BtsCI GGATG 1 cut(s) 1115
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 4 cut(s) 294, 465, 481, 1089
BveI ACCTGC 1 cut(s) 138
Cac8I GCNNGC 5 cut(s) 456, 488, 502, 568, 936
CfoI GCGC 1 cut(s) 335
Cfr10I RCCGGY 1 cut(s) 590
Cfr13I GGNCC 2 cut(s) 868, 1022
Csp6I GTAC 2 cut(s) 90, 434
CspCI CAANNNNNGTGG 2 cut(s) 954, 989
CviAII CATG 4 cut(s) 598, 766, 778, 1144
CviQI GTAC 2 cut(s) 90, 434
DdeI CTNAG 5 cut(s) 297, 531, 684, 861, 1032
DpnI GATC 5 cut(s) 209, 265, 330, 347, 413
DpnII GATC 5 cut(s) 207, 263, 328, 345, 411
DraI TTTAAA 1 cut(s) 1054
EaeI YGGCCR 2 cut(s) 484, 936
Eam1104I CTCTTC 3 cut(s) 16, 83, 1131
EarI CTCTTC 3 cut(s) 16, 83, 1131
Eco130I CCWWGG 1 cut(s) 777
Eco31I GGTCTC 1 cut(s) 520
Eco47I GGWCC 1 cut(s) 868
EcoRI GAATTC 1 cut(s) 729
EcoRII CCWGG 4 cut(s) 373, 663, 902, 1178
EcoT14I CCWWGG 1 cut(s) 777
EcoT22I ATGCAT 1 cut(s) 790
ErhI CCWWGG 1 cut(s) 777
FaeI CATG 4 cut(s) 601, 769, 781, 1147
FaqI GGGAC 4 cut(s) 18, 391, 881, 964
FatI CATG 4 cut(s) 597, 765, 777, 1143
FauNDI CATATG 1 cut(s) 130
Fnu4HI GCNGC 5 cut(s) 201, 234, 505, 1113, 1200
FokI GGATG 1 cut(s) 1102
Fsp4HI GCNGC 5 cut(s) 201, 234, 505, 1113, 1200
FspBI CTAG 2 cut(s) 501, 734
GlaI GCGC 1 cut(s) 334
GluI GCNGC 5 cut(s) 201, 234, 505, 1113, 1200
HaeIII GGCC 4 cut(s) 486, 938, 964, 1024
HapII CCGG 4 cut(s) 390, 591, 726, 1019
HhaI GCGC 1 cut(s) 335
Hin1II CATG 4 cut(s) 601, 769, 781, 1147
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HindIII AAGCTT 1 cut(s) 981
HinfI GANTC 3 cut(s) 270, 379, 952
HpaII CCGG 4 cut(s) 390, 591, 726, 1019
HphI GGTGA 5 cut(s) 73, 162, 196, 241, 988
Hpy166II GTNNAC 6 cut(s) 120, 139, 472, 524, 1089, 1227
Hpy188I TCNGA 7 cut(s) 221, 404, 532, 844, 1033, 1046, 1215
Hpy188III TCNNGA 4 cut(s) 211, 267, 390, 734
Hpy8I GTNNAC 6 cut(s) 120, 139, 472, 524, 1089, 1227
HpyAV CCTTC 2 cut(s) 802, 940
HpyCH4III ACNGT 1 cut(s) 476
HpyCH4IV ACGT 3 cut(s) 116, 1028, 1229
HpyCH4V TGCA 8 cut(s) 113, 236, 458, 570, 788, 893, 1103, 1112
HpyF10VI GCNNNNNNNGC 3 cut(s) 542, 899, 1109
HpyF3I CTNAG 5 cut(s) 297, 531, 684, 861, 1032
HpySE526I ACGT 3 cut(s) 116, 1028, 1229
Hsp92II CATG 4 cut(s) 601, 769, 781, 1147
HspAI GCGC 1 cut(s) 333
Kpn2I TCCGGA 1 cut(s) 389
Kzo9I GATC 5 cut(s) 207, 263, 328, 345, 411
LmnI GCTCC 2 cut(s) 884, 1065
Lsp1109I GCAGC 5 cut(s) 212, 220, 516, 1124, 1186
LweI GCATC 8 cut(s) 100, 220, 763, 775, 797, 866, 880, 1124
MaeI CTAG 2 cut(s) 501, 734
MaeII ACGT 3 cut(s) 116, 1028, 1229
MaeIII GTNAC 3 cut(s) 184, 593, 677
MalI GATC 5 cut(s) 209, 265, 330, 347, 413
MboI GATC 5 cut(s) 207, 263, 328, 345, 411
MflI RGATCY 1 cut(s) 411
MhlI GDGCHC 3 cut(s) 424, 481, 690
MlsI TGGCCA 2 cut(s) 486, 938
MluCI AATT 5 cut(s) 547, 729, 919, 1039, 1132
MluNI TGGCCA 2 cut(s) 486, 938
MlyI GAGTC 2 cut(s) 373, 946
MmeI TCCRAC 2 cut(s) 265, 382
Mox20I TGGCCA 2 cut(s) 486, 938
Mph1103I ATGCAT 1 cut(s) 790
MroI TCCGGA 1 cut(s) 389
MscI TGGCCA 2 cut(s) 486, 938
MseI TTAA 5 cut(s) 21, 630, 693, 1053, 1131
Msp20I TGGCCA 2 cut(s) 486, 938
MspI CCGG 4 cut(s) 390, 591, 726, 1019
MspR9I CCNGG 6 cut(s) 375, 665, 726, 904, 1020, 1180
Mva1269I GAATGC 1 cut(s) 254
MvaI CCWGG 4 cut(s) 375, 665, 904, 1180
MvnI CGCG 1 cut(s) 333
MwoI GCNNNNNNNGC 3 cut(s) 542, 899, 1109
NciI CCSGG 2 cut(s) 726, 1020
NcoI CCATGG 1 cut(s) 777
NdeI CATATG 1 cut(s) 130
NdeII GATC 5 cut(s) 207, 263, 328, 345, 411
NheI GCTAGC 1 cut(s) 500
NlaIII CATG 4 cut(s) 601, 769, 781, 1147
NlaIV GGNNCC 3 cut(s) 423, 869, 1023
NmuCI GTSAC 2 cut(s) 184, 677
NsiI ATGCAT 1 cut(s) 790
NspI RCATGY 1 cut(s) 769
PciI ACATGT 1 cut(s) 765
PctI GAATGC 1 cut(s) 254
PfeI GAWTC 1 cut(s) 270
PflMI CCANNNNNTGG 1 cut(s) 342
PfoI TCCNGGA 1 cut(s) 724
PkrI GCNGC 5 cut(s) 202, 235, 506, 1114, 1201
PleI GAGTC 2 cut(s) 373, 946
PpsI GAGTC 2 cut(s) 373, 946
Ppu21I YACGTR 1 cut(s) 1230
PscI ACATGT 1 cut(s) 765
PsiI TTATAA 1 cut(s) 672
Psp1406I AACGTT 1 cut(s) 116
Psp6I CCWGG 4 cut(s) 373, 663, 902, 1178
PspGI CCWGG 4 cut(s) 373, 663, 902, 1178
PspN4I GGNNCC 3 cut(s) 423, 869, 1023
PspPI GGNCC 2 cut(s) 868, 1022
PstI CTGCAG 1 cut(s) 460
PsuI RGATCY 1 cut(s) 411
RsaI GTAC 2 cut(s) 91, 435
RsaNI GTAC 2 cut(s) 90, 434
SaqAI TTAA 5 cut(s) 21, 630, 693, 1053, 1131
SatI GCNGC 5 cut(s) 201, 234, 505, 1113, 1200
Sau3AI GATC 5 cut(s) 207, 263, 328, 345, 411
Sau96I GGNCC 2 cut(s) 868, 1022
ScaI AGTACT 1 cut(s) 91
SchI GAGTC 2 cut(s) 373, 946
ScrFI CCNGG 6 cut(s) 375, 665, 726, 904, 1020, 1180
SduI GDGCHC 3 cut(s) 424, 481, 690
SfaNI GCATC 8 cut(s) 100, 220, 763, 775, 797, 866, 880, 1124
SfcI CTRYAG 1 cut(s) 456
SinI GGWCC 1 cut(s) 868
SmlI CTYRAG 2 cut(s) 305, 517
SmoI CTYRAG 2 cut(s) 305, 517
Sse9I AATT 5 cut(s) 547, 729, 919, 1039, 1132
SsiI CCGC 2 cut(s) 155, 252
SspI AATATT 1 cut(s) 25
SspMI CTAG 2 cut(s) 501, 734
StyD4I CCNGG 6 cut(s) 373, 663, 724, 902, 1018, 1178
StyI CCWWGG 1 cut(s) 777
TaaI ACNGT 1 cut(s) 476
TaiI ACGT 3 cut(s) 119, 1031, 1232
TaqI TCGA 2 cut(s) 273, 1153
TasI AATT 5 cut(s) 547, 729, 919, 1039, 1132
TatI WGTACW 1 cut(s) 89
TfiI GAWTC 1 cut(s) 270
Tru1I TTAA 5 cut(s) 21, 630, 693, 1053, 1131
Tru9I TTAA 5 cut(s) 21, 630, 693, 1053, 1131
TscAI CASTG 4 cut(s) 301, 465, 481, 1096
TseFI GTSAC 2 cut(s) 184, 677
TseI GCWGC 5 cut(s) 200, 233, 504, 1112, 1199
Tsp45I GTSAC 2 cut(s) 184, 677
TspDTI ATGAA 4 cut(s) 84, 614, 891, 1154
TspGWI ACGGA 1 cut(s) 627
TspRI CASTG 4 cut(s) 301, 465, 481, 1096
Van91I CCANNNNNTGG 1 cut(s) 342
VpaK11BI GGWCC 1 cut(s) 868
XapI RAATTY 3 cut(s) 729, 919, 1039
XbaI TCTAGA 1 cut(s) 733
XceI RCATGY 1 cut(s) 769
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XspI CTAG 2 cut(s) 501, 734
ZrmI AGTACT 1 cut(s) 91
Zsp2I ATGCAT 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.