Rh2AG376700

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0015223
Physical Location & Seq
Reverse (-)
56436500 .. 56439385
2886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG376700.1

Sequence Viewer

Length: 1233 bp
ATGGAATGCTCTTTCATCGTTAATATTCCCAAAAGACAAATGGAGTGCTTCTCTTCCTCCCTCCTCCGGTTGCTTCTTCTCTTCACCATCAGTACTTCATTTCTCAATGTTGATGCAACGTTTACTGGAACATATGGAGTAAACTATGGCAGGATAGCAGACAACATACCATCACCTCATAGTGTGGTGACACTTCTCAAAGCAGCGAAGATCAAGAACATCAGAATATATGATGCTGTACCTGAAGTCCTCACCGCCTTCAAGGGATCAGGAATCGAAATAGTTGTTGGACTTGGCAATGAGTTCCTTAAGGAAATCAGCATAGCTGAGGATCGCGCCACGACTTGGATCAAAGAGAAGGTCCAGCCATACCTACCAGGGACTCACATTTCCGGAATAGCAGTCGGGAATGAGATCTTGGGGGGGACTGATGTGGTACTCTGGGAGGTCTTGTTGCCTGCAGTGAAGAATGTGTATAGTGCTCTTGACCAGCTTGGTTTGGCTAGCAGCATTGAGGTCTCAAGTCCACATTCTGAGGCTGTTTTTGCCAATTCTTACCCACCATCTGCTTGCATTTTTAGAGAAGATATTGCTGGTTACATGAAGCCACTTCTGGAGTTCTTTTCGCAGATTAAATCTCCGTTTTACATAAACGCATATCCATTCCTTGCTTATAAGAGTGACCCTGAGCACATTAACCTCAACTATGCTCTATTCAAGTCAAATCCGGGAATTCTAGACACAAAGACTAATCTCCACTATGACAACATGTTCGATGCCATGGTTGATGCATCTTATTTCGCTTTGGAGAAGGCTGGATATGACAAGATGGAAGTCATAGTATCCGAAACTGGTTGGGCATCCAAGGGGGACCCAGATGAAGCAGGAGCAGATGCGAAAAATGCCAGGACTTACAACTTGAATTTGAAGAAAAGGCTGGCCAAGAAGAAGGGGACTCCTCATAGGCCAAAGATGGTGGTGAAAGCCTATATTTTTGCTTTGTTCAATGAGAACTTGAAACCGGGGCCAACGTCTGAGAGGAATTTCGGATTGTTCAAAGCAGATGGGAGCATTTCGTATGACATTGGGTTCACTGGACTTGTTGCACCAAACGCAGCATCCTCATCTCTTCTTAATTACAAGGGCATGGGATTTCGAGGTTGGTTTCAATCTTCGCATACCTGGGTTTTCACAAGTTGTGCTGCTGTTCTGCTTCTAATGTTATCGTCATAA

Protein Analysis

410

Amino Acids

45.11

Weight (kDa)

7.05

Isoelectric Point (pI)

39.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 46 - 364 1.9e-83 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015223)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15800
fragaria_vesca FvH4_6g29810
malus_domestica MD00G1122900.v1.1 MD17G1210800.v1.1
prunus_persica Prupe.3G086200_v2.0.a1
pyrus_communis pycom09g14110 pycom17g21580
rosa_chinensis RchiOBHm_Chr2g0135631
rosa_laevigata RLG00000019473
rosa_multiflora Rmu_sc0002398.1_g000035
rosa_roxburghii Rroxscaffold_2G00109030
rosa_rugosa Rorug02G0325300
rosa_samantha Rh2AG376700 Rh2BG383000 Rh2DG399100
rosa_wichuraiana Rw2G030720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 675
AccB7I CCANNNNNTGG 1 cut(s) 345
AccII CGCG 1 cut(s) 336
AccIII TCCGGA 1 cut(s) 392
AciI CCGC 1 cut(s) 255
AclI AACGTT 1 cut(s) 119
AclWI GGATC 3 cut(s) 274, 339, 356
AcoI YGGCCR 1 cut(s) 939
AcsI RAATTY 3 cut(s) 732, 922, 1042
AcuI CTGAAG 1 cut(s) 264
AfaI GTAC 3 cut(s) 94, 240, 438
AfiI CCNNNNNNNGG 2 cut(s) 66, 345
AflII CTTAAG 1 cut(s) 308
AflIII ACRYGT 1 cut(s) 768
AgsI TTSAA 8 cut(s) 262, 718, 922, 928, 1006, 1018, 1057, 1169
AjnI CCWGG 3 cut(s) 376, 905, 1181
AjuI GAANNNNNNNTTGG 4 cut(s) 270, 302, 401, 433
AluBI AGCT 2 cut(s) 326, 493
AluI AGCT 2 cut(s) 326, 493
Alw21I GWGCWC 2 cut(s) 484, 693
Alw26I GTCTC 1 cut(s) 523
AlwI GGATC 3 cut(s) 274, 339, 356
Aor13HI TCCGGA 1 cut(s) 392
AoxI GGCC 3 cut(s) 939, 965, 1025
ApeKI GCWGC 4 cut(s) 203, 507, 1115, 1202
ApoI RAATTY 3 cut(s) 732, 922, 1042
ArsI GACNNNNNNTTYG 4 cut(s) 345, 377, 755, 787
AspLEI GCGC 1 cut(s) 338
AspS9I GGNCC 3 cut(s) 361, 871, 1025
AsuC2I CCSGG 2 cut(s) 729, 1023
AsuHPI GGTGA 5 cut(s) 76, 165, 199, 244, 991
AsuNHI GCTAGC 1 cut(s) 503
AvaII GGWCC 2 cut(s) 361, 871
BalI TGGCCA 1 cut(s) 941
Bbv12I GWGCWC 2 cut(s) 484, 693
BbvCI CCTCAGC 1 cut(s) 327
BbvI GCAGC 4 cut(s) 215, 519, 1127, 1189
BccI CCATC 6 cut(s) 95, 178, 571, 823, 967, 1058
BciT130I CCWGG 3 cut(s) 378, 907, 1183
BciVI GTATCC 1 cut(s) 853
BcnI CCSGG 2 cut(s) 729, 1023
BcoDI GTCTC 1 cut(s) 523
BfaI CTAG 2 cut(s) 504, 737
BfmI CTRYAG 1 cut(s) 459
BfrI CTTAAG 1 cut(s) 308
BfuI GTATCC 1 cut(s) 853
BglII AGATCT 1 cut(s) 414
BisI GCNGC 4 cut(s) 204, 508, 1116, 1203
BlsI GCNGC 4 cut(s) 205, 509, 1117, 1204
BmcAI AGTACT 1 cut(s) 94
Bme1390I CCNGG 5 cut(s) 378, 729, 907, 1023, 1183
Bme18I GGWCC 2 cut(s) 361, 871
BmgT120I GGNCC 3 cut(s) 361, 871, 1025
BmiI GGNNCC 3 cut(s) 872, 873, 1026
BmrFI CCNGG 5 cut(s) 378, 729, 907, 1023, 1183
BmsI GCATC 8 cut(s) 103, 223, 766, 778, 800, 869, 883, 1127
BmtI GCTAGC 1 cut(s) 507
BplI GAGNNNNNCTC 2 cut(s) 35, 67
BpmI CTGGAG 1 cut(s) 635
Bpu10I CCTNAGC 2 cut(s) 327, 687
BpuEI CTTGAG 1 cut(s) 505
BpuMI CCSGG 2 cut(s) 729, 1023
BsaI GGTCTC 1 cut(s) 523
BsaJI CCNNGG 5 cut(s) 377, 780, 864, 1022, 1182
BsaWI WCCGGW 2 cut(s) 66, 392
BsaXI ACNNNNNCTCC 2 cut(s) 437, 467
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 345
Bse1I ACTGG 3 cut(s) 130, 856, 1099
Bse3DI GCAATG 1 cut(s) 304
BseAI TCCGGA 1 cut(s) 392
BseBI CCWGG 3 cut(s) 378, 907, 1183
BseDI CCNNGG 5 cut(s) 377, 780, 864, 1022, 1182
BseGI GGATG 2 cut(s) 860, 1118
BseLI CCNNNNNNNGG 2 cut(s) 66, 345
BseMI GCAATG 1 cut(s) 304
BseMII CTCAG 4 cut(s) 318, 525, 678, 1026
BseNI ACTGG 3 cut(s) 130, 856, 1099
BseRI GAGGAG 2 cut(s) 53, 948
BseXI GCAGC 4 cut(s) 215, 519, 1127, 1189
Bsh1236I CGCG 1 cut(s) 336
BshFI GGCC 3 cut(s) 941, 967, 1027
BsiHKAI GWGCWC 2 cut(s) 484, 693
BsiSI CCGG 4 cut(s) 67, 393, 728, 1022
BslFI GGGAC 4 cut(s) 394, 439, 884, 967
BslI CCNNNNNNNGG 2 cut(s) 66, 345
BsmAI GTCTC 1 cut(s) 523
BsmFI GGGAC 4 cut(s) 394, 439, 884, 967
BsmI GAATGC 1 cut(s) 11
BsnI GGCC 3 cut(s) 941, 967, 1027
Bso31I GGTCTC 1 cut(s) 523
Bsp1286I GDGCHC 2 cut(s) 484, 693
Bsp13I TCCGGA 1 cut(s) 392
Bsp143I GATC 5 cut(s) 210, 266, 331, 348, 414
Bsp19I CCATGG 1 cut(s) 780
BspACI CCGC 1 cut(s) 255
BspANI GGCC 3 cut(s) 941, 967, 1027
BspCNI CTCAG 4 cut(s) 319, 526, 679, 1027
BspEI TCCGGA 1 cut(s) 392
BspFNI CGCG 1 cut(s) 336
BspLI GGNNCC 3 cut(s) 872, 873, 1026
BspMAI CTGCAG 1 cut(s) 463
BspOI GCTAGC 1 cut(s) 507
BspPI GGATC 3 cut(s) 274, 339, 356
BspTI CTTAAG 1 cut(s) 308
BspTNI GGTCTC 1 cut(s) 523
BsrDI GCAATG 1 cut(s) 304
BsrI ACTGG 3 cut(s) 130, 856, 1099
BssECI CCNNGG 5 cut(s) 377, 780, 864, 1022, 1182
BssMI GATC 5 cut(s) 210, 266, 331, 348, 414
BssT1I CCWWGG 2 cut(s) 780, 864
Bst2UI CCWGG 3 cut(s) 378, 907, 1183
Bst6I CTCTTC 3 cut(s) 58, 86, 1134
BstAFI CTTAAG 1 cut(s) 308
BstC8I GCNNGC 4 cut(s) 459, 505, 571, 939
BstDEI CTNAG 4 cut(s) 327, 534, 687, 1035
BstDSI CCRYGG 1 cut(s) 780
BstF5I GGATG 2 cut(s) 860, 1118
BstFNI CGCG 1 cut(s) 336
BstHHI GCGC 1 cut(s) 338
BstKTI GATC 5 cut(s) 213, 269, 334, 351, 417
BstMAI GTCTC 1 cut(s) 523
BstMBI GATC 5 cut(s) 210, 266, 331, 348, 414
BstMWI GCNNNNNNNGC 3 cut(s) 545, 902, 1112
BstNI CCWGG 3 cut(s) 378, 907, 1183
BstNSI RCATGY 1 cut(s) 772
BstSCI CCNGG 5 cut(s) 376, 727, 905, 1021, 1181
BstSFI CTRYAG 1 cut(s) 459
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 4 cut(s) 215, 519, 1127, 1189
BstX2I RGATCY 1 cut(s) 414
BstYI RGATCY 1 cut(s) 414
BsuI GTATCC 1 cut(s) 853
BsuRI GGCC 3 cut(s) 941, 967, 1027
BtgI CCRYGG 1 cut(s) 780
BtsCI GGATG 2 cut(s) 860, 1118
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 2 cut(s) 468, 1092
Cac8I GCNNGC 4 cut(s) 459, 505, 571, 939
CfoI GCGC 1 cut(s) 338
Cfr13I GGNCC 3 cut(s) 361, 871, 1025
Csp6I GTAC 3 cut(s) 93, 239, 437
CspCI CAANNNNNGTGG 2 cut(s) 957, 992
CviAII CATG 4 cut(s) 601, 769, 781, 1147
CviQI GTAC 3 cut(s) 93, 239, 437
DdeI CTNAG 4 cut(s) 327, 534, 687, 1035
DpnI GATC 5 cut(s) 212, 268, 333, 350, 416
DpnII GATC 5 cut(s) 210, 266, 331, 348, 414
EaeI YGGCCR 1 cut(s) 939
Eam1104I CTCTTC 3 cut(s) 58, 86, 1134
EarI CTCTTC 3 cut(s) 58, 86, 1134
Eco130I CCWWGG 2 cut(s) 780, 864
Eco31I GGTCTC 1 cut(s) 523
Eco47I GGWCC 2 cut(s) 361, 871
Eco57I CTGAAG 1 cut(s) 264
EcoO109I RGGNCCY 1 cut(s) 871
EcoRI GAATTC 1 cut(s) 732
EcoRII CCWGG 3 cut(s) 376, 905, 1181
EcoT14I CCWWGG 2 cut(s) 780, 864
EcoT22I ATGCAT 1 cut(s) 793
ErhI CCWWGG 2 cut(s) 780, 864
FaeI CATG 4 cut(s) 604, 772, 784, 1150
FaqI GGGAC 4 cut(s) 394, 439, 884, 967
FatI CATG 4 cut(s) 600, 768, 780, 1146
FauNDI CATATG 1 cut(s) 133
Fnu4HI GCNGC 4 cut(s) 204, 508, 1116, 1203
FokI GGATG 2 cut(s) 847, 1105
Fsp4HI GCNGC 4 cut(s) 204, 508, 1116, 1203
FspBI CTAG 2 cut(s) 504, 737
GlaI GCGC 1 cut(s) 337
GluI GCNGC 4 cut(s) 204, 508, 1116, 1203
GsuI CTGGAG 1 cut(s) 635
HaeIII GGCC 3 cut(s) 941, 967, 1027
HapII CCGG 4 cut(s) 67, 393, 728, 1022
HhaI GCGC 1 cut(s) 338
Hin1II CATG 4 cut(s) 604, 772, 784, 1150
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HinfI GANTC 3 cut(s) 273, 382, 955
HpaII CCGG 4 cut(s) 67, 393, 728, 1022
HphI GGTGA 5 cut(s) 76, 165, 199, 244, 991
Hpy166II GTNNAC 4 cut(s) 123, 142, 527, 1092
Hpy188I TCNGA 5 cut(s) 224, 535, 847, 1036, 1049
Hpy188III TCNNGA 7 cut(s) 214, 270, 393, 406, 485, 614, 737
Hpy8I GTNNAC 4 cut(s) 123, 142, 527, 1092
HpyAV CCTTC 4 cut(s) 268, 352, 805, 943
HpyCH4IV ACGT 2 cut(s) 119, 1031
HpyCH4V TGCA 5 cut(s) 116, 461, 573, 791, 1106
HpyF10VI GCNNNNNNNGC 3 cut(s) 545, 902, 1112
HpyF3I CTNAG 4 cut(s) 327, 534, 687, 1035
HpySE526I ACGT 2 cut(s) 119, 1031
Hsp92II CATG 4 cut(s) 604, 772, 784, 1150
HspAI GCGC 1 cut(s) 336
KflI GGGWCCC 1 cut(s) 871
Kpn2I TCCGGA 1 cut(s) 392
Kzo9I GATC 5 cut(s) 210, 266, 331, 348, 414
LmnI GCTCC 2 cut(s) 887, 1068
Lsp1109I GCAGC 4 cut(s) 215, 519, 1127, 1189
LweI GCATC 8 cut(s) 103, 223, 766, 778, 800, 869, 883, 1127
MaeI CTAG 2 cut(s) 504, 737
MaeII ACGT 2 cut(s) 119, 1031
MaeIII GTNAC 3 cut(s) 187, 596, 680
MalI GATC 5 cut(s) 212, 268, 333, 350, 416
MboI GATC 5 cut(s) 210, 266, 331, 348, 414
MflI RGATCY 1 cut(s) 414
MhlI GDGCHC 2 cut(s) 484, 693
MlsI TGGCCA 1 cut(s) 941
MluCI AATT 5 cut(s) 550, 732, 922, 1042, 1135
MluNI TGGCCA 1 cut(s) 941
MlyI GAGTC 2 cut(s) 376, 949
MmeI TCCRAC 1 cut(s) 268
Mox20I TGGCCA 1 cut(s) 941
Mph1103I ATGCAT 1 cut(s) 793
MroI TCCGGA 1 cut(s) 392
MscI TGGCCA 1 cut(s) 941
MseI TTAA 5 cut(s) 21, 309, 633, 696, 1134
Msp20I TGGCCA 1 cut(s) 941
MspCI CTTAAG 1 cut(s) 308
MspI CCGG 4 cut(s) 67, 393, 728, 1022
MspR9I CCNGG 5 cut(s) 378, 729, 907, 1023, 1183
Mva1269I GAATGC 1 cut(s) 11
MvaI CCWGG 3 cut(s) 378, 907, 1183
MvnI CGCG 1 cut(s) 336
MwoI GCNNNNNNNGC 3 cut(s) 545, 902, 1112
NciI CCSGG 2 cut(s) 729, 1023
NcoI CCATGG 1 cut(s) 780
NdeI CATATG 1 cut(s) 133
NdeII GATC 5 cut(s) 210, 266, 331, 348, 414
NheI GCTAGC 1 cut(s) 503
NlaIII CATG 4 cut(s) 604, 772, 784, 1150
NlaIV GGNNCC 3 cut(s) 872, 873, 1026
NmuCI GTSAC 2 cut(s) 187, 680
NsiI ATGCAT 1 cut(s) 793
NspI RCATGY 1 cut(s) 772
PciI ACATGT 1 cut(s) 768
PctI GAATGC 1 cut(s) 11
PfeI GAWTC 1 cut(s) 273
PflMI CCANNNNNTGG 1 cut(s) 345
PfoI TCCNGGA 1 cut(s) 727
PkrI GCNGC 4 cut(s) 205, 509, 1117, 1204
PleI GAGTC 2 cut(s) 376, 949
PpsI GAGTC 2 cut(s) 376, 949
PpuMI RGGWCCY 1 cut(s) 871
PscI ACATGT 1 cut(s) 768
PsiI TTATAA 1 cut(s) 675
Psp1406I AACGTT 1 cut(s) 119
Psp5II RGGWCCY 1 cut(s) 871
Psp6I CCWGG 3 cut(s) 376, 905, 1181
PspGI CCWGG 3 cut(s) 376, 905, 1181
PspN4I GGNNCC 3 cut(s) 872, 873, 1026
PspPI GGNCC 3 cut(s) 361, 871, 1025
PspPPI RGGWCCY 1 cut(s) 871
PstI CTGCAG 1 cut(s) 463
PsuI RGATCY 1 cut(s) 414
RsaI GTAC 3 cut(s) 94, 240, 438
RsaNI GTAC 3 cut(s) 93, 239, 437
SaqAI TTAA 5 cut(s) 21, 309, 633, 696, 1134
SatI GCNGC 4 cut(s) 204, 508, 1116, 1203
Sau3AI GATC 5 cut(s) 210, 266, 331, 348, 414
Sau96I GGNCC 3 cut(s) 361, 871, 1025
ScaI AGTACT 1 cut(s) 94
SchI GAGTC 2 cut(s) 376, 949
ScrFI CCNGG 5 cut(s) 378, 729, 907, 1023, 1183
SduI GDGCHC 2 cut(s) 484, 693
SfaNI GCATC 8 cut(s) 103, 223, 766, 778, 800, 869, 883, 1127
SfcI CTRYAG 1 cut(s) 459
SinI GGWCC 2 cut(s) 361, 871
SmlI CTYRAG 2 cut(s) 308, 520
SmoI CTYRAG 2 cut(s) 308, 520
Sse9I AATT 5 cut(s) 550, 732, 922, 1042, 1135
SsiI CCGC 1 cut(s) 255
SspI AATATT 1 cut(s) 25
SspMI CTAG 2 cut(s) 504, 737
StyD4I CCNGG 5 cut(s) 376, 727, 905, 1021, 1181
StyI CCWWGG 2 cut(s) 780, 864
TaiI ACGT 2 cut(s) 122, 1034
TaqI TCGA 3 cut(s) 276, 774, 1156
TasI AATT 5 cut(s) 550, 732, 922, 1042, 1135
TatI WGTACW 1 cut(s) 92
TfiI GAWTC 1 cut(s) 273
Tru1I TTAA 5 cut(s) 21, 309, 633, 696, 1134
Tru9I TTAA 5 cut(s) 21, 309, 633, 696, 1134
TscAI CASTG 2 cut(s) 468, 1099
TseFI GTSAC 2 cut(s) 187, 680
TseI GCWGC 4 cut(s) 203, 507, 1115, 1202
Tsp45I GTSAC 2 cut(s) 187, 680
TspDTI ATGAA 4 cut(s) 4, 87, 617, 894
TspGWI ACGGA 1 cut(s) 630
TspRI CASTG 2 cut(s) 468, 1099
Van91I CCANNNNNTGG 1 cut(s) 345
Vha464I CTTAAG 1 cut(s) 308
VpaK11BI GGWCC 2 cut(s) 361, 871
XapI RAATTY 3 cut(s) 732, 922, 1042
XbaI TCTAGA 1 cut(s) 736
XceI RCATGY 1 cut(s) 772
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XspI CTAG 2 cut(s) 504, 737
ZrmI AGTACT 1 cut(s) 94
Zsp2I ATGCAT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.