Rmu_sc0002398.1_g000035

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002398.1
OG0015223
Physical Location & Seq
Reverse (-)
128517 .. 130271
1755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002398.1_g000035.1.cds

Sequence Viewer

Length: 1194 bp
atggagtgcttctcttcctccctcctccggttgcttcttctcttcaccatcagtgcttcatttctcaatgttgatgcaacgtttactggaacatatggagtaaactatggcaggatagcagacaacataccatcacctcatagtgtggtgacacttctcaaagcagcgaagatcaagaacatcagaatatatgatgctgtacctgaagtcctcacagccttcaagggatcaggaatcgaaatagttgttggacttggcaatgatttgcttaaggaaatcagcatagccgaggatcgtgccacgacttggatcaaagagaaggtccagccatacctaccagggactcacatttccggaatagcagtcgggaatgagatcttgggggggactgatgtggtactctgggaggtcttgttgcctgcagtgaagaatgtgtatagtgctcttgaccagcttggtttggctagcagcattgaggtctcaagtccacattctgaggctgtttttgccaattcttacccaccatctgcttgcatttttagagaagatattgctggttacatgaagccacttctggagttcttttcgcagattaaatctccgttttacataaacgcatatccattccttgcttataagagtgaccctgagcacattaacctcaactatgctctattcaagtcaaatcccggaattctagacacaaagactaatctccactatgacaacatgttcgatgccatggttgatgcatcttatttcgctttggagaaggctggatatgacaagatggaagtcatagtatccgaaactggttgggcatccaagggggacccagatgaagcaggagcagatgcgaaaaatgccaggacttacaacttgaatttgaagaaaaggctggccaagaagaaggggactcctcataggccaaagatggtggtgaaagcctacatttttgctttgttcaatgagaatttgaaaccggggccaacgtctgagaggaatttcggattgttcaaagcagatgggagcatttcgtatgacattgggttcactggacttgttgctccaaacgcagcatcctcatctcttcttaattacaagggcatgggatttcgaggttggtttcaatcttcgcatacctgggttttcacaagttgtgctgctgttctgcttctaatgttgtcgtcataa

Protein Analysis

397

Amino Acids

43.48

Weight (kDa)

6.67

Isoelectric Point (pI)

37.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015223)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15800
fragaria_vesca FvH4_6g29810
malus_domestica MD00G1122900.v1.1 MD17G1210800.v1.1
prunus_persica Prupe.3G086200_v2.0.a1
pyrus_communis pycom09g14110 pycom17g21580
rosa_chinensis RchiOBHm_Chr2g0135631
rosa_laevigata RLG00000019473
rosa_multiflora Rmu_sc0002398.1_g000035
rosa_roxburghii Rroxscaffold_2G00109030
rosa_rugosa Rorug02G0325300
rosa_samantha Rh2AG376700 Rh2BG383000 Rh2DG399100
rosa_wichuraiana Rw2G030720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 636
AccB7I CCANNNNNTGG 1 cut(s) 306
AccIII TCCGGA 1 cut(s) 353
AclI AACGTT 1 cut(s) 80
AclWI GGATC 3 cut(s) 235, 300, 317
AcoI YGGCCR 1 cut(s) 900
AcsI RAATTY 4 cut(s) 693, 883, 973, 1003
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 2 cut(s) 201, 399
AfiI CCNNNNNNNGG 2 cut(s) 27, 306
AflII CTTAAG 1 cut(s) 269
AflIII ACRYGT 1 cut(s) 729
AgsI TTSAA 8 cut(s) 223, 679, 883, 889, 967, 979, 1018, 1130
AjnI CCWGG 3 cut(s) 337, 866, 1142
AjuI GAANNNNNNNTTGG 4 cut(s) 231, 263, 362, 394
AluBI AGCT 1 cut(s) 454
AluI AGCT 1 cut(s) 454
Alw21I GWGCWC 2 cut(s) 445, 654
Alw26I GTCTC 1 cut(s) 484
AlwI GGATC 3 cut(s) 235, 300, 317
Aor13HI TCCGGA 1 cut(s) 353
AoxI GGCC 3 cut(s) 900, 926, 986
ApeKI GCWGC 4 cut(s) 164, 468, 1076, 1163
ApoI RAATTY 4 cut(s) 693, 883, 973, 1003
ArsI GACNNNNNNTTYG 4 cut(s) 306, 338, 716, 748
AspS9I GGNCC 3 cut(s) 322, 832, 986
AsuC2I CCSGG 2 cut(s) 690, 984
AsuHPI GGTGA 4 cut(s) 37, 126, 160, 952
AsuNHI GCTAGC 1 cut(s) 464
AvaII GGWCC 2 cut(s) 322, 832
BalI TGGCCA 1 cut(s) 902
Bbv12I GWGCWC 2 cut(s) 445, 654
BbvI GCAGC 4 cut(s) 176, 480, 1088, 1150
BccI CCATC 6 cut(s) 56, 139, 532, 784, 928, 1019
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BciT130I CCWGG 3 cut(s) 339, 868, 1144
BciVI GTATCC 1 cut(s) 814
BcnI CCSGG 2 cut(s) 690, 984
BcoDI GTCTC 1 cut(s) 484
BfaI CTAG 2 cut(s) 465, 698
BfmI CTRYAG 1 cut(s) 420
BfrI CTTAAG 1 cut(s) 269
BfuI GTATCC 1 cut(s) 814
BglII AGATCT 1 cut(s) 375
BisI GCNGC 4 cut(s) 165, 469, 1077, 1164
BlsI GCNGC 4 cut(s) 166, 470, 1078, 1165
Bme1390I CCNGG 5 cut(s) 339, 690, 868, 984, 1144
Bme18I GGWCC 2 cut(s) 322, 832
BmgT120I GGNCC 3 cut(s) 322, 832, 986
BmiI GGNNCC 3 cut(s) 833, 834, 987
BmrFI CCNGG 5 cut(s) 339, 690, 868, 984, 1144
BmsI GCATC 8 cut(s) 64, 184, 727, 739, 761, 830, 844, 1088
BmtI GCTAGC 1 cut(s) 468
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 596
Bpu10I CCTNAGC 1 cut(s) 648
BpuEI CTTGAG 1 cut(s) 466
BpuMI CCSGG 2 cut(s) 690, 984
BsaI GGTCTC 1 cut(s) 484
BsaJI CCNNGG 6 cut(s) 288, 338, 741, 825, 983, 1143
BsaWI WCCGGW 2 cut(s) 27, 353
BsaXI ACNNNNNCTCC 2 cut(s) 398, 428
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 306
Bse1I ACTGG 3 cut(s) 91, 817, 1060
Bse3DI GCAATG 1 cut(s) 265
BseAI TCCGGA 1 cut(s) 353
BseBI CCWGG 3 cut(s) 339, 868, 1144
BseDI CCNNGG 6 cut(s) 288, 338, 741, 825, 983, 1143
BseGI GGATG 2 cut(s) 821, 1079
BseLI CCNNNNNNNGG 2 cut(s) 27, 306
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 3 cut(s) 486, 639, 987
BseNI ACTGG 3 cut(s) 91, 817, 1060
BseRI GAGGAG 2 cut(s) 14, 909
BseXI GCAGC 4 cut(s) 176, 480, 1088, 1150
BshFI GGCC 3 cut(s) 902, 928, 988
BsiHKAI GWGCWC 2 cut(s) 445, 654
BsiSI CCGG 4 cut(s) 28, 354, 690, 983
BslFI GGGAC 4 cut(s) 355, 400, 845, 928
BslI CCNNNNNNNGG 2 cut(s) 27, 306
BsmAI GTCTC 1 cut(s) 484
BsmFI GGGAC 4 cut(s) 355, 400, 845, 928
BsnI GGCC 3 cut(s) 902, 928, 988
Bso31I GGTCTC 1 cut(s) 484
Bsp1286I GDGCHC 2 cut(s) 445, 654
Bsp13I TCCGGA 1 cut(s) 353
Bsp143I GATC 5 cut(s) 171, 227, 292, 309, 375
Bsp19I CCATGG 1 cut(s) 741
BspANI GGCC 3 cut(s) 902, 928, 988
BspCNI CTCAG 3 cut(s) 487, 640, 988
BspEI TCCGGA 1 cut(s) 353
BspLI GGNNCC 3 cut(s) 833, 834, 987
BspMAI CTGCAG 1 cut(s) 424
BspOI GCTAGC 1 cut(s) 468
BspPI GGATC 3 cut(s) 235, 300, 317
BspTI CTTAAG 1 cut(s) 269
BspTNI GGTCTC 1 cut(s) 484
BsrDI GCAATG 1 cut(s) 265
BsrI ACTGG 3 cut(s) 91, 817, 1060
BssECI CCNNGG 6 cut(s) 288, 338, 741, 825, 983, 1143
BssMI GATC 5 cut(s) 171, 227, 292, 309, 375
BssT1I CCWWGG 2 cut(s) 741, 825
Bst2UI CCWGG 3 cut(s) 339, 868, 1144
Bst6I CTCTTC 3 cut(s) 19, 47, 1095
BstAFI CTTAAG 1 cut(s) 269
BstC8I GCNNGC 4 cut(s) 420, 466, 532, 900
BstDEI CTNAG 3 cut(s) 495, 648, 996
BstDSI CCRYGG 1 cut(s) 741
BstF5I GGATG 2 cut(s) 821, 1079
BstKTI GATC 5 cut(s) 174, 230, 295, 312, 378
BstMAI GTCTC 1 cut(s) 484
BstMBI GATC 5 cut(s) 171, 227, 292, 309, 375
BstMWI GCNNNNNNNGC 3 cut(s) 506, 863, 1073
BstNI CCWGG 3 cut(s) 339, 868, 1144
BstNSI RCATGY 1 cut(s) 733
BstSCI CCNGG 5 cut(s) 337, 688, 866, 982, 1142
BstSFI CTRYAG 1 cut(s) 420
BstV1I GCAGC 4 cut(s) 176, 480, 1088, 1150
BstX2I RGATCY 1 cut(s) 375
BstYI RGATCY 1 cut(s) 375
BsuI GTATCC 1 cut(s) 814
BsuRI GGCC 3 cut(s) 902, 928, 988
BtgI CCRYGG 1 cut(s) 741
BtsCI GGATG 2 cut(s) 821, 1079
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 3 cut(s) 58, 429, 1053
Cac8I GCNNGC 4 cut(s) 420, 466, 532, 900
Cfr13I GGNCC 3 cut(s) 322, 832, 986
Csp6I GTAC 2 cut(s) 200, 398
CspCI CAANNNNNGTGG 2 cut(s) 918, 953
CviAII CATG 4 cut(s) 562, 730, 742, 1108
CviQI GTAC 2 cut(s) 200, 398
DdeI CTNAG 3 cut(s) 495, 648, 996
DpnI GATC 5 cut(s) 173, 229, 294, 311, 377
DpnII GATC 5 cut(s) 171, 227, 292, 309, 375
EaeI YGGCCR 1 cut(s) 900
Eam1104I CTCTTC 3 cut(s) 19, 47, 1095
EarI CTCTTC 3 cut(s) 19, 47, 1095
Eco130I CCWWGG 2 cut(s) 741, 825
Eco31I GGTCTC 1 cut(s) 484
Eco47I GGWCC 2 cut(s) 322, 832
Eco57I CTGAAG 1 cut(s) 225
EcoO109I RGGNCCY 1 cut(s) 832
EcoRI GAATTC 1 cut(s) 693
EcoRII CCWGG 3 cut(s) 337, 866, 1142
EcoT14I CCWWGG 2 cut(s) 741, 825
EcoT22I ATGCAT 1 cut(s) 754
ErhI CCWWGG 2 cut(s) 741, 825
FaeI CATG 4 cut(s) 565, 733, 745, 1111
FaqI GGGAC 4 cut(s) 355, 400, 845, 928
FatI CATG 4 cut(s) 561, 729, 741, 1107
FauNDI CATATG 1 cut(s) 94
Fnu4HI GCNGC 4 cut(s) 165, 469, 1077, 1164
FokI GGATG 2 cut(s) 808, 1066
Fsp4HI GCNGC 4 cut(s) 165, 469, 1077, 1164
FspBI CTAG 2 cut(s) 465, 698
GluI GCNGC 4 cut(s) 165, 469, 1077, 1164
GsuI CTGGAG 1 cut(s) 596
HaeIII GGCC 3 cut(s) 902, 928, 988
HapII CCGG 4 cut(s) 28, 354, 690, 983
Hin1II CATG 4 cut(s) 565, 733, 745, 1111
HinfI GANTC 3 cut(s) 234, 343, 916
HpaII CCGG 4 cut(s) 28, 354, 690, 983
HphI GGTGA 4 cut(s) 37, 126, 160, 952
Hpy166II GTNNAC 4 cut(s) 84, 103, 488, 1053
Hpy188I TCNGA 5 cut(s) 185, 496, 808, 997, 1010
Hpy188III TCNNGA 7 cut(s) 175, 231, 354, 367, 446, 575, 698
Hpy8I GTNNAC 4 cut(s) 84, 103, 488, 1053
HpyAV CCTTC 4 cut(s) 229, 313, 766, 904
HpyCH4IV ACGT 2 cut(s) 80, 992
HpyCH4V TGCA 4 cut(s) 77, 422, 534, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 506, 863, 1073
HpyF3I CTNAG 3 cut(s) 495, 648, 996
HpySE526I ACGT 2 cut(s) 80, 992
Hsp92II CATG 4 cut(s) 565, 733, 745, 1111
KflI GGGWCCC 1 cut(s) 832
Kpn2I TCCGGA 1 cut(s) 353
Kzo9I GATC 5 cut(s) 171, 227, 292, 309, 375
LmnI GCTCC 3 cut(s) 848, 1029, 1072
Lsp1109I GCAGC 4 cut(s) 176, 480, 1088, 1150
LweI GCATC 8 cut(s) 64, 184, 727, 739, 761, 830, 844, 1088
MaeI CTAG 2 cut(s) 465, 698
MaeII ACGT 2 cut(s) 80, 992
MaeIII GTNAC 3 cut(s) 148, 557, 641
MalI GATC 5 cut(s) 173, 229, 294, 311, 377
MboI GATC 5 cut(s) 171, 227, 292, 309, 375
MflI RGATCY 1 cut(s) 375
MhlI GDGCHC 2 cut(s) 445, 654
MlsI TGGCCA 1 cut(s) 902
MluCI AATT 6 cut(s) 511, 693, 883, 973, 1003, 1096
MluNI TGGCCA 1 cut(s) 902
MlyI GAGTC 2 cut(s) 337, 910
MmeI TCCRAC 1 cut(s) 229
Mox20I TGGCCA 1 cut(s) 902
Mph1103I ATGCAT 1 cut(s) 754
MroI TCCGGA 1 cut(s) 353
MscI TGGCCA 1 cut(s) 902
MseI TTAA 4 cut(s) 270, 594, 657, 1095
Msp20I TGGCCA 1 cut(s) 902
MspCI CTTAAG 1 cut(s) 269
MspI CCGG 4 cut(s) 28, 354, 690, 983
MspR9I CCNGG 5 cut(s) 339, 690, 868, 984, 1144
MvaI CCWGG 3 cut(s) 339, 868, 1144
MwoI GCNNNNNNNGC 3 cut(s) 506, 863, 1073
NciI CCSGG 2 cut(s) 690, 984
NcoI CCATGG 1 cut(s) 741
NdeI CATATG 1 cut(s) 94
NdeII GATC 5 cut(s) 171, 227, 292, 309, 375
NheI GCTAGC 1 cut(s) 464
NlaIII CATG 4 cut(s) 565, 733, 745, 1111
NlaIV GGNNCC 3 cut(s) 833, 834, 987
NmeAIII GCCGAG 1 cut(s) 313
NmuCI GTSAC 2 cut(s) 148, 641
NsiI ATGCAT 1 cut(s) 754
NspI RCATGY 1 cut(s) 733
PciI ACATGT 1 cut(s) 729
PfeI GAWTC 1 cut(s) 234
PflMI CCANNNNNTGG 1 cut(s) 306
PfoI TCCNGGA 1 cut(s) 688
PkrI GCNGC 4 cut(s) 166, 470, 1078, 1165
PleI GAGTC 2 cut(s) 337, 910
PpsI GAGTC 2 cut(s) 337, 910
PpuMI RGGWCCY 1 cut(s) 832
PscI ACATGT 1 cut(s) 729
PsiI TTATAA 1 cut(s) 636
Psp1406I AACGTT 1 cut(s) 80
Psp5II RGGWCCY 1 cut(s) 832
Psp6I CCWGG 3 cut(s) 337, 866, 1142
PspGI CCWGG 3 cut(s) 337, 866, 1142
PspN4I GGNNCC 3 cut(s) 833, 834, 987
PspPI GGNCC 3 cut(s) 322, 832, 986
PspPPI RGGWCCY 1 cut(s) 832
PstI CTGCAG 1 cut(s) 424
PsuI RGATCY 1 cut(s) 375
RsaI GTAC 2 cut(s) 201, 399
RsaNI GTAC 2 cut(s) 200, 398
SaqAI TTAA 4 cut(s) 270, 594, 657, 1095
SatI GCNGC 4 cut(s) 165, 469, 1077, 1164
Sau3AI GATC 5 cut(s) 171, 227, 292, 309, 375
Sau96I GGNCC 3 cut(s) 322, 832, 986
SchI GAGTC 2 cut(s) 337, 910
ScrFI CCNGG 5 cut(s) 339, 690, 868, 984, 1144
SduI GDGCHC 2 cut(s) 445, 654
SfaNI GCATC 8 cut(s) 64, 184, 727, 739, 761, 830, 844, 1088
SfcI CTRYAG 1 cut(s) 420
SinI GGWCC 2 cut(s) 322, 832
SmlI CTYRAG 2 cut(s) 269, 481
SmoI CTYRAG 2 cut(s) 269, 481
Sse9I AATT 6 cut(s) 511, 693, 883, 973, 1003, 1096
SspMI CTAG 2 cut(s) 465, 698
StyD4I CCNGG 5 cut(s) 337, 688, 866, 982, 1142
StyI CCWWGG 2 cut(s) 741, 825
TaiI ACGT 2 cut(s) 83, 995
TaqI TCGA 3 cut(s) 237, 735, 1117
TasI AATT 6 cut(s) 511, 693, 883, 973, 1003, 1096
TfiI GAWTC 1 cut(s) 234
Tru1I TTAA 4 cut(s) 270, 594, 657, 1095
Tru9I TTAA 4 cut(s) 270, 594, 657, 1095
TscAI CASTG 3 cut(s) 58, 429, 1060
TseFI GTSAC 2 cut(s) 148, 641
TseI GCWGC 4 cut(s) 164, 468, 1076, 1163
Tsp45I GTSAC 2 cut(s) 148, 641
TspDTI ATGAA 3 cut(s) 48, 578, 855
TspGWI ACGGA 1 cut(s) 591
TspRI CASTG 3 cut(s) 58, 429, 1060
Van91I CCANNNNNTGG 1 cut(s) 306
Vha464I CTTAAG 1 cut(s) 269
VpaK11BI GGWCC 2 cut(s) 322, 832
XapI RAATTY 4 cut(s) 693, 883, 973, 1003
XbaI TCTAGA 1 cut(s) 697
XceI RCATGY 1 cut(s) 733
XspI CTAG 2 cut(s) 465, 698
Zsp2I ATGCAT 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.