Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004055

Physical Location & Seq

Genomic Coordinates Reverse (-)

5737886 .. 5743335

Gene Structure 5450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G16840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2481 bp

ATGGTTACAGGCGATAAAGAATCTTCCTTGATGAAGAAGAGGAACAAGAGAAGCCATAAGAGAAAGCGAGAGGAGGATTTCGAACGTATAGATTCACTTCCTTGGAGCTCTTCTATACCCATTGGAGAAGACGACGAAGGCGAATCCTTCTCCACTCTATTTTCAGGCTCAGGCCAGCTCGACGGAGGTTTTCTATCACTTGAGGAGATTGATGAAGCTGATTACCATCTAACTCTCCCTACCATTGAAAGTGAAATAACAGAGAGAAAACAATCTCCAGAAGATGATGATGATACCAACGAGACAGTGGATGAGATGATTGAAGGAGAAGAAGCTGAAGAAGATGGAGAAGGAAGGGATGATGAGGATGACGAAGATGACGAGGAGACTCGTAAGAAAAAAGAGAAGAAAGCTAAGAGGAATAAGGAGAAGAAAAAAGAGAAGAAGAAGAAGAAGCAGAAGAAGATTAATGAGGCCGCAAAGAATCAGGACGCTTCTGCTGTTAGCTGTGATGGAGATGACACAGTAGAGGAGCAAGTTGAGGAAGAAGAGATTCCTCCAGAATTTAGTGCATGGAGTTCGATGAGACTCCATCCACTACTCATGAAGTCCATATACCGCCTCGATTTCAAGGAGCCAACAAAAATCCAGAAGGCTTGTTTTAACGTTGCAGCATATCAGGGAAAGGATGTTATTGGTGCTGCAGAGACAGGATCTGGAAAGACACTTGCTTTTGGGTTGCCCATACTGCAACGCCTCTTAGACGAGCGGGAAAAGGTTGGTAAATTGTATGCATTAAAGGGAGAAGAAGCACAGAAATATGCTGCAGATGGCTATTTACGAGCTCTAATCATCACTCCAACTAGGGAACTTGCTCTTCAGGTGACGGAGCATCTTGAGAATGCTGCCAAGAATCTTAGCGTCAAGGTCGTTCCTATTGTTGGTGGGATGTTTTCAGAGAAGCAGGAAAGACGTTTAAAAGAGAAACCTGAAATAGTTGTTGCAACTCCAGGAAGGTTATGGGAACTTATGTCCGCTGGAGAAAAGCATCTTGTAGAGCTGCATTCCTTGTCGTTCTTTGTGTTGGACGAGGCTGATCGCATGGTTGAAAGAGGTCATTTCAGGGAGCTGCAGTCTATACTCGACTTGCTTCCAGTGACAGATAAACCAAATGAAGGGAAAACGCAAACTGTGAAGAGTAATGACACAGTTTTAAACGTCCCGAAGAAGAAAAGACAAACTTTTGTTTTCTCAGCCACCATAGCGCTGTCTTCGGATTTCCGTAAAAAGCTAAAGCGTGGCTCCTCAAAGTCAAAGCAATCATCATCTGGTGAAGTGAATTCTATTGAGGTTTTATCTGAACGAGCTGGAATGAGAGATAATGTTGCCATCATTGATCTGACAACTACATCTATTTTGGCACCAAAGATTGAAGAATCTTTTATTAAGTGCGAAGAGAAGGAAAAAGACGCATACTTGTATTATATTTTGAGCGTCCATGGACAAGGGCGGACAATTGTTTTCTGCACATCAGTGACTGATTTGCGGCATATCTCTGGGCTTTTAAAGATTCTTGGACTTGATGTTTGCACACTCTTCTCAGAAATGAAGCAGCGAGCTCGGTTGAAGTCAATCGACCGTTTCCGTGCGAGCGAAAATGGAATACTCATAGCAACAGATCTTGTAGCAAGGGGTATTGATATTAAGAATGTCCGAACTATTATTCACTACAAACTTCCACATTCGGCAGAAGTGTATGTACATAGATGTGGGAGGACTGCTAGAGCATTCGCAGATGGATGCAGTATAGCTTTGATTGAGCCAAATGAGACGTCCAAGTTTTACACGTTATGCAAGTCATTCTCTATGGAAAGCGTAAAGATATTCCCTTTGGATAACTCTTATATGCCAGCTGTGAGGAAGCGATTATATCTAGCACGTCAAATATATGAGATTGAGCGGAAAGGCTCGCGGGAGAATGCAGACAGGACCTGGCTTAAAAAACATGCTGAATCAATGGAACTCGAATTGGACGATGAAGAAAGTGAAGAGGAAAGAGTGGACAATGTCAGGCAGAGAAAAGCGACCTCAGCACGACTTAATAAGCTGAAGGAGGAACTTAGCACGCTCTTATCACATCCGATGCAGCCCAAGAAATTTTCAGGCCGTTACTTTGCTGGGGTTGGTGTGTCGACTCTTATGCAGAATCAGTTTGTAGAGTTAAAGAAGCAAAAACAAGCACAAATGCAAATTGGTGGAGATATAAAGAGAAGAAAACTTGTTGTCATTAACCAGAACTGCATCGAACCTCTTCAAGCCCTTCGTGCTGGTGGTAACGAGATGCTGAAAATGAAAGGTCAGAGTGCAGAGAAGAGGCGCGATATAGCGAGCTTGAAAAAGAAAAGAAAGGAAGAGAAGATAGGTCGGCGTGATCAACGAAGGAACCAGAAGAAACAGAGAAAACTAATGGCTTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

826

Amino Acids

93.98

Weight (kDa)

8.56

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	215 - 423	3e-38	DEAD/DEAH box helicase
Helicase_C	PF00271	490 - 597	6.8e-25	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16840 AT3G16840
fragaria_vesca	FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910
malus_domestica	MD12G1094500.v1.1 MD14G1084300.v1.1
prunus_persica	Prupe.5G037600_v2.0.a1 Prupe.5G037600_v2.0.a1 Prupe.5G037600_v2.0.a1 Prupe.5G037600_v2.0.a1
pyrus_communis	pycom14g07400
rosa_chinensis	RchiOBHm_Chr3g0492441
rosa_laevigata	RLG00000022766
rosa_multiflora	Rmu_sc0003156.1_g000008 Rmu_sc0007709.1_g000003 Rmu_sc0017916.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392260
rosa_rugosa	Rorug03G0253900
rosa_samantha	Rh3AG304100 Rh3BG340000 Rh3CG337200 Rh3DG339200
rosa_wichuraiana	Rw3G026810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1835
AccB1I	GGYRCC	1 cut(s)	1420
AccBSI	CCGCTC	2 cut(s)	769, 1960
AccI	GTMKAC	1 cut(s)	2192
AccII	CGCG	2 cut(s)	1972, 2379
AciI	CCGC	8 cut(s)	477, 619, 769, 1035, 1510, 1546, 1960, 1972
AclI	AACGTT	1 cut(s)	666
AclWI	GGATC	1 cut(s)	721
AcsI	RAATTY	3 cut(s)	563, 1339, 2156
AcuI	CTGAAG	3 cut(s)	357, 863, 2129
AcyI	GRCGYC	1 cut(s)	1832
AfaI	GTAC	1 cut(s)	1761
AfeI	AGCGCT	1 cut(s)	1266
AfiI	CCNNNNNNNGG	2 cut(s)	941, 1175
AflIII	ACRYGT	1 cut(s)	1845
AgsI	TTSAA	8 cut(s)	248, 323, 631, 1109, 1433, 1627, 2315, 2395
AjiI	CACGTC	1 cut(s)	1940
AjnI	CCWGG	2 cut(s)	1009, 1991
AleI	CACNNNNGTG	1 cut(s)	1532
Alw21I	GWGCWC	3 cut(s)	110, 847, 1621
Alw26I	GTCTC	5 cut(s)	296, 380, 580, 701, 1823
AlwI	GGATC	1 cut(s)	721
AlwNI	CAGNNNCTG	3 cut(s)	716, 1538, 1992
Aor51HI	AGCGCT	1 cut(s)	1266
AoxI	GGCC	3 cut(s)	172, 474, 2164
ApeKI	GCWGC	8 cut(s)	671, 701, 824, 905, 1060, 1129, 1612, 2146
ApoI	RAATTY	3 cut(s)	563, 1339, 2156
ArsI	GACNNNNNNTTYG	4 cut(s)	1569, 1601, 1817, 1849
AseI	ATTAAT	1 cut(s)	468
Asp700I	GAANNNNTTC	2 cut(s)	552, 2310
AspLEI	GCGC	2 cut(s)	1267, 2379
AspS9I	GGNCC	1 cut(s)	1989
AsuHPI	GGTGA	2 cut(s)	895, 1343
AsuII	TTCGAA	1 cut(s)	81
AvaII	GGWCC	1 cut(s)	1989
BanI	GGYRCC	1 cut(s)	1420
BanII	GRGCYC	3 cut(s)	110, 847, 1621
BarI	GAAGNNNNNNTAC	4 cut(s)	599, 631, 1743, 1775
BbsI	GAAGAC	2 cut(s)	135, 1263
Bbv12I	GWGCWC	3 cut(s)	110, 847, 1621
BbvCI	CCTCAGC	1 cut(s)	2089
BbvI	GCAGC	8 cut(s)	683, 688, 811, 892, 1047, 1116, 1624, 2158
BccI	CCATC	7 cut(s)	234, 338, 506, 600, 824, 1397, 1790
BceAI	ACGGC	1 cut(s)	2151
BcgI	CGANNNNNNTGC	6 cut(s)	561, 595, 1601, 1635, 2182, 2216
BciT130I	CCWGG	2 cut(s)	1011, 1993
BclI	TGATCA	1 cut(s)	2431
BcoDI	GTCTC	5 cut(s)	296, 380, 580, 701, 1823
BfaI	CTAG	3 cut(s)	864, 1782, 1934
BfmI	CTRYAG	3 cut(s)	702, 825, 1130
BfoI	RGCGCY	1 cut(s)	1268
BglII	AGATCT	1 cut(s)	1678
Bme1390I	CCNGG	2 cut(s)	1011, 1993
Bme18I	GGWCC	1 cut(s)	1989
BmgBI	CACGTC	1 cut(s)	1940
BmgT120I	GGNCC	1 cut(s)	1989
BmiI	GGNNCC	4 cut(s)	636, 1303, 1422, 2444
BmrFI	CCNGG	2 cut(s)	1011, 1993
BmsI	GCATC	6 cut(s)	901, 1057, 1790, 2133, 2310, 2331
BpiI	GAAGAC	2 cut(s)	135, 1263
BpmI	CTGGAG	4 cut(s)	261, 543, 993, 1059
Bpu10I	CCTNAGC	2 cut(s)	169, 2089
Bpu14I	TTCGAA	1 cut(s)	81
BpuEI	CTTGAG	2 cut(s)	221, 917
BsaBI	GATNNNNATC	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	1832
BsaJI	CCNNGG	2 cut(s)	101, 1498
BsaXI	ACNNNNNCTCC	2 cut(s)	1118, 1148
Bsc4I	CCNNNNNNNGG	2 cut(s)	941, 1175
Bse1I	ACTGG	1 cut(s)	1154
Bse8I	GATNNNNATC	1 cut(s)	225
BseBI	CCWGG	2 cut(s)	1011, 1993
BseDI	CCNNGG	2 cut(s)	101, 1498
BseGI	GGATG	8 cut(s)	316, 364, 373, 592, 694, 954, 1805, 2137
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	941, 1175
BseMII	CTCAG	4 cut(s)	183, 1266, 1614, 2103
BseNI	ACTGG	1 cut(s)	1154
BseRI	GAGGAG	5 cut(s)	86, 218, 398, 545, 1294
BseXI	GCAGC	8 cut(s)	683, 688, 811, 892, 1047, 1116, 1624, 2158
BseYI	CCCAGC	1 cut(s)	2177
BsgI	GTGCAG	2 cut(s)	1510, 2385
Bsh1236I	CGCG	2 cut(s)	1972, 2379
Bsh1285I	CGRYCG	1 cut(s)	1639
BshFI	GGCC	3 cut(s)	174, 476, 2166
BshNI	GGYRCC	1 cut(s)	1420
BsiEI	CGRYCG	1 cut(s)	1639
BsiHKAI	GWGCWC	3 cut(s)	110, 847, 1621
BslFI	GGGAC	1 cut(s)	1205
BslI	CCNNNNNNNGG	2 cut(s)	941, 1175
BsmAI	GTCTC	5 cut(s)	296, 380, 580, 701, 1823
BsmBI	CGTCTC	1 cut(s)	1823
BsmFI	GGGAC	1 cut(s)	1205
BsmI	GAATGC	4 cut(s)	907, 1063, 1787, 1984
BsnI	GGCC	3 cut(s)	174, 476, 2166
Bsp119I	TTCGAA	1 cut(s)	81
Bsp1286I	GDGCHC	3 cut(s)	110, 847, 1621
Bsp1407I	TGTACA	1 cut(s)	1759
Bsp143I	GATC	5 cut(s)	713, 1096, 1396, 1678, 2431
Bsp19I	CCATGG	1 cut(s)	1498
BspACI	CCGC	8 cut(s)	477, 619, 769, 1035, 1510, 1546, 1960, 1972
BspANI	GGCC	3 cut(s)	174, 476, 2166
BspCNI	CTCAG	4 cut(s)	182, 1265, 1613, 2102
BspFNI	CGCG	2 cut(s)	1972, 2379
BspHI	TCATGA	1 cut(s)	603
BspLI	GGNNCC	4 cut(s)	636, 1303, 1422, 2444
BspMAI	CTGCAG	3 cut(s)	706, 829, 1134
BspPI	GGATC	1 cut(s)	721
BspQI	GCTCTTC	2 cut(s)	115, 882
BspT104I	TTCGAA	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	1420
BsrBI	CCGCTC	2 cut(s)	769, 1960
BsrGI	TGTACA	1 cut(s)	1759
BsrI	ACTGG	1 cut(s)	1154
BssECI	CCNNGG	2 cut(s)	101, 1498
BssMI	GATC	5 cut(s)	713, 1096, 1396, 1678, 2431
BssNI	GRCGYC	1 cut(s)	1832
BssT1I	CCWWGG	2 cut(s)	101, 1498
Bst2UI	CCWGG	2 cut(s)	1011, 1993
Bst4CI	ACNGT	5 cut(s)	307, 526, 1192, 1210, 1640
BstACI	GRCGYC	1 cut(s)	1832
BstAUI	TGTACA	1 cut(s)	1759
BstBI	TTCGAA	1 cut(s)	81
BstC8I	GCNNGC	7 cut(s)	176, 1617, 1651, 1911, 1970, 2126, 2389
BstDEI	CTNAG	8 cut(s)	169, 414, 760, 917, 1252, 1600, 2089, 2120
BstDSI	CCRYGG	1 cut(s)	1498
BstF5I	GGATG	8 cut(s)	316, 364, 373, 592, 694, 954, 1805, 2137
BstFNI	CGCG	2 cut(s)	1972, 2379
BstH2I	RGCGCY	1 cut(s)	1268
BstHHI	GCGC	2 cut(s)	1267, 2379
BstKTI	GATC	5 cut(s)	716, 1099, 1399, 1681, 2434
BstMAI	GTCTC	5 cut(s)	296, 380, 580, 701, 1823
BstMBI	GATC	5 cut(s)	713, 1096, 1396, 1678, 2431
BstMCI	CGRYCG	1 cut(s)	1639
BstMWI	GCNNNNNNNGC	4 cut(s)	748, 1262, 2090, 2324
BstNI	CCWGG	2 cut(s)	1011, 1993
BstNSI	RCATGY	1 cut(s)	2009
BstSCI	CCNGG	2 cut(s)	1009, 1991
BstSFI	CTRYAG	3 cut(s)	702, 825, 1130
BstUI	CGCG	2 cut(s)	1972, 2379
BstV1I	GCAGC	8 cut(s)	683, 688, 811, 892, 1047, 1116, 1624, 2158
BstV2I	GAAGAC	2 cut(s)	135, 1263
BstX2I	RGATCY	2 cut(s)	713, 1678
BstYI	RGATCY	2 cut(s)	713, 1678
BsuRI	GGCC	3 cut(s)	174, 476, 2166
BtgI	CCRYGG	1 cut(s)	1498
BtrI	CACGTC	1 cut(s)	1940
BtsCI	GGATG	8 cut(s)	316, 364, 373, 592, 694, 954, 1805, 2137
BtsIMutI	CAGTG	3 cut(s)	312, 1161, 1539
Cac8I	GCNNGC	7 cut(s)	176, 1617, 1651, 1911, 1970, 2126, 2389
CaiI	CAGNNNCTG	3 cut(s)	716, 1538, 1992
CciI	TCATGA	1 cut(s)	603
CfoI	GCGC	2 cut(s)	1267, 2379
Cfr13I	GGNCC	1 cut(s)	1989
CseI	GACGC	4 cut(s)	500, 910, 1478, 1483
Csp6I	GTAC	1 cut(s)	1760
CviAII	CATG	5 cut(s)	573, 604, 1102, 1499, 2006
CviQI	GTAC	1 cut(s)	1760
DdeI	CTNAG	8 cut(s)	169, 414, 760, 917, 1252, 1600, 2089, 2120
DpnI	GATC	5 cut(s)	715, 1098, 1398, 1680, 2433
DpnII	GATC	5 cut(s)	713, 1096, 1396, 1678, 2431
DraI	TTTAAA	3 cut(s)	978, 1215, 1566
EciI	GGCGGA	1 cut(s)	1525
Ecl136II	GAGCTC	3 cut(s)	108, 845, 1619
Eco130I	CCWWGG	2 cut(s)	101, 1498
Eco24I	GRGCYC	3 cut(s)	110, 847, 1621
Eco47I	GGWCC	1 cut(s)	1989
Eco47III	AGCGCT	1 cut(s)	1266
Eco53kI	GAGCTC	3 cut(s)	108, 845, 1619
Eco57I	CTGAAG	3 cut(s)	357, 863, 2129
EcoICRI	GAGCTC	3 cut(s)	108, 845, 1619
EcoO109I	RGGNCCY	1 cut(s)	1989
EcoRI	GAATTC	1 cut(s)	1339
EcoRII	CCWGG	2 cut(s)	1009, 1991
EcoT14I	CCWWGG	2 cut(s)	101, 1498
EcoT22I	ATGCAT	1 cut(s)	796
EcoT38I	GRGCYC	3 cut(s)	110, 847, 1621
ErhI	CCWWGG	2 cut(s)	101, 1498
Esp3I	CGTCTC	1 cut(s)	1823
FaeI	CATG	5 cut(s)	576, 607, 1105, 1502, 2009
FalI	AAGNNNNNCTT	2 cut(s)	1225, 1257
FaqI	GGGAC	1 cut(s)	1205
FatI	CATG	5 cut(s)	572, 603, 1101, 1498, 2005
FauI	CCCGC	2 cut(s)	762, 1965
FbaI	TGATCA	1 cut(s)	2431
FblI	GTMKAC	1 cut(s)	2192
FokI	GGATG	8 cut(s)	323, 371, 380, 579, 701, 961, 1812, 2124
FriOI	GRGCYC	3 cut(s)	110, 847, 1621
FspBI	CTAG	3 cut(s)	864, 1782, 1934
GlaI	GCGC	2 cut(s)	1266, 2378
GsaI	CCCAGC	1 cut(s)	2181
GsuI	CTGGAG	4 cut(s)	261, 543, 993, 1059
HaeII	RGCGCY	1 cut(s)	1268
HaeIII	GGCC	3 cut(s)	174, 476, 2166
HgaI	GACGC	4 cut(s)	500, 910, 1478, 1483
HhaI	GCGC	2 cut(s)	1267, 2379
Hin1I	GRCGYC	1 cut(s)	1832
Hin1II	CATG	5 cut(s)	576, 607, 1105, 1502, 2009
Hin6I	GCGC	2 cut(s)	1265, 2377
HinP1I	GCGC	2 cut(s)	1265, 2377
HincII	GTYRAC	1 cut(s)	2193
HindII	GTYRAC	1 cut(s)	2193
HphI	GGTGA	2 cut(s)	895, 1343
Hpy166II	GTNNAC	2 cut(s)	2062, 2193
Hpy188I	TCNGA	8 cut(s)	958, 1276, 1360, 1401, 1603, 1715, 2142, 2361
Hpy188III	TCNNGA	8 cut(s)	278, 488, 560, 604, 649, 717, 896, 1222
Hpy8I	GTNNAC	2 cut(s)	2062, 2193
Hpy99I	CGWCG	2 cut(s)	137, 185
HpyCH4III	ACNGT	5 cut(s)	307, 526, 1192, 1210, 1640
HpyCH4IV	ACGT	7 cut(s)	85, 666, 973, 1218, 1832, 1847, 1939
HpyF10VI	GCNNNNNNNGC	4 cut(s)	748, 1262, 2090, 2324
HpyF3I	CTNAG	8 cut(s)	169, 414, 760, 917, 1252, 1600, 2089, 2120
HpySE526I	ACGT	7 cut(s)	85, 666, 973, 1218, 1832, 1847, 1939
Hsp92I	GRCGYC	1 cut(s)	1832
Hsp92II	CATG	5 cut(s)	576, 607, 1105, 1502, 2009
HspAI	GCGC	2 cut(s)	1265, 2377
Ksp22I	TGATCA	1 cut(s)	2431
Kzo9I	GATC	5 cut(s)	713, 1096, 1396, 1678, 2431
LguI	GCTCTTC	2 cut(s)	115, 882
LmnI	GCTCC	6 cut(s)	105, 532, 634, 889, 1126, 1307
Lsp1109I	GCAGC	8 cut(s)	683, 688, 811, 892, 1047, 1116, 1624, 2158
LweI	GCATC	6 cut(s)	901, 1057, 1790, 2133, 2310, 2331
MaeI	CTAG	3 cut(s)	864, 1782, 1934
MaeII	ACGT	7 cut(s)	85, 666, 973, 1218, 1832, 1847, 1939
MaeIII	GTNAC	6 cut(s)	4, 883, 1156, 1534, 2168, 2333
MalI	GATC	5 cut(s)	715, 1098, 1398, 1680, 2433
MbiI	CCGCTC	2 cut(s)	769, 1960
MboI	GATC	5 cut(s)	713, 1096, 1396, 1678, 2431
MfeI	CAATTG	1 cut(s)	1515
MflI	RGATCY	2 cut(s)	713, 1678
MhlI	GDGCHC	3 cut(s)	110, 847, 1621
MluCI	AATT	7 cut(s)	563, 785, 1339, 1515, 2027, 2156, 2250
MlyI	GAGTC	3 cut(s)	382, 582, 2188
MmeI	TCCRAC	2 cut(s)	884, 1065
Mph1103I	ATGCAT	1 cut(s)	796
MroXI	GAANNNNTTC	2 cut(s)	552, 2310
MslI	CAYNNNNRTG	2 cut(s)	1532, 1767
MspA1I	CMGCKG	2 cut(s)	1037, 1913
MspR9I	CCNGG	2 cut(s)	1011, 1993
MunI	CAATTG	1 cut(s)	1515
Mva1269I	GAATGC	4 cut(s)	907, 1063, 1787, 1984
MvaI	CCWGG	2 cut(s)	1011, 1993
MvnI	CGCG	2 cut(s)	1972, 2379
MwoI	GCNNNNNNNGC	4 cut(s)	748, 1262, 2090, 2324
NcoI	CCATGG	1 cut(s)	1498
NdeII	GATC	5 cut(s)	713, 1096, 1396, 1678, 2431
NlaIII	CATG	5 cut(s)	576, 607, 1105, 1502, 2009
NlaIV	GGNNCC	4 cut(s)	636, 1303, 1422, 2444
NmuCI	GTSAC	3 cut(s)	883, 1156, 1534
NsiI	ATGCAT	1 cut(s)	796
NspI	RCATGY	1 cut(s)	2009
NspV	TTCGAA	1 cut(s)	81
OliI	CACNNNNGTG	1 cut(s)	1532
PagI	TCATGA	1 cut(s)	603
PciSI	GCTCTTC	2 cut(s)	115, 882
PcsI	WCGNNNNNNNCGW	3 cut(s)	138, 378, 2031
PctI	GAATGC	4 cut(s)	907, 1063, 1787, 1984
PdmI	GAANNNNTTC	2 cut(s)	552, 2310
PflFI	GACNNNGTC	1 cut(s)	2066
PfoI	TCCNGGA	1 cut(s)	1009
PleI	GAGTC	3 cut(s)	382, 582, 2188
PpsI	GAGTC	3 cut(s)	382, 582, 2188
PpuMI	RGGWCCY	1 cut(s)	1989
PshBI	ATTAAT	1 cut(s)	468
Psp124BI	GAGCTC	3 cut(s)	110, 847, 1621
Psp1406I	AACGTT	1 cut(s)	666
Psp5II	RGGWCCY	1 cut(s)	1989
Psp6I	CCWGG	2 cut(s)	1009, 1991
PspFI	CCCAGC	1 cut(s)	2177
PspGI	CCWGG	2 cut(s)	1009, 1991
PspN4I	GGNNCC	4 cut(s)	636, 1303, 1422, 2444
PspPI	GGNCC	1 cut(s)	1989
PspPPI	RGGWCCY	1 cut(s)	1989
PstI	CTGCAG	3 cut(s)	706, 829, 1134
PstNI	CAGNNNCTG	3 cut(s)	716, 1538, 1992
PsuI	RGATCY	2 cut(s)	713, 1678
PsyI	GACNNNGTC	1 cut(s)	2066
PvuII	CAGCTG	1 cut(s)	1913
RsaI	GTAC	1 cut(s)	1761
RsaNI	GTAC	1 cut(s)	1760
RseI	CAYNNNNRTG	2 cut(s)	1532, 1767
SacI	GAGCTC	3 cut(s)	110, 847, 1621
SalI	GTCGAC	1 cut(s)	2191
SapI	GCTCTTC	2 cut(s)	115, 882
Sau3AI	GATC	5 cut(s)	713, 1096, 1396, 1678, 2431
Sau96I	GGNCC	1 cut(s)	1989
SchI	GAGTC	3 cut(s)	382, 582, 2188
ScrFI	CCNGG	2 cut(s)	1011, 1993
SduI	GDGCHC	3 cut(s)	110, 847, 1621
SfaNI	GCATC	6 cut(s)	901, 1057, 1790, 2133, 2310, 2331
SfcI	CTRYAG	3 cut(s)	702, 825, 1130
SfuI	TTCGAA	1 cut(s)	81
SinI	GGWCC	1 cut(s)	1989
SmiMI	CAYNNNNRTG	2 cut(s)	1532, 1767
SmlI	CTYRAG	2 cut(s)	200, 896
SmoI	CTYRAG	2 cut(s)	200, 896
Sse9I	AATT	7 cut(s)	563, 785, 1339, 1515, 2027, 2156, 2250
SsiI	CCGC	8 cut(s)	477, 619, 769, 1035, 1510, 1546, 1960, 1972
SspMI	CTAG	3 cut(s)	864, 1782, 1934
SstI	GAGCTC	3 cut(s)	110, 847, 1621
StyD4I	CCNGG	2 cut(s)	1009, 1991
StyI	CCWWGG	2 cut(s)	101, 1498
TaaI	ACNGT	5 cut(s)	307, 526, 1192, 1210, 1640
TaiI	ACGT	7 cut(s)	88, 669, 976, 1221, 1835, 1850, 1942
TaqI	TCGA	9 cut(s)	81, 180, 581, 624, 1143, 1635, 2025, 2192, 2304
TasI	AATT	7 cut(s)	563, 785, 1339, 1515, 2027, 2156, 2250
TatI	WGTACW	1 cut(s)	1759
TauI	GCSGC	2 cut(s)	479, 1549
TscAI	CASTG	3 cut(s)	312, 1161, 1539
TseFI	GTSAC	3 cut(s)	883, 1156, 1534
TseI	GCWGC	8 cut(s)	671, 701, 824, 905, 1060, 1129, 1612, 2146
Tsp45I	GTSAC	3 cut(s)	883, 1156, 1534
TspDTI	ATGAA	7 cut(s)	47, 228, 620, 1188, 1622, 2052, 2366
TspGWI	ACGGA	4 cut(s)	198, 902, 1271, 1634
TspRI	CASTG	3 cut(s)	312, 1161, 1539
Tth111I	GACNNNGTC	1 cut(s)	2066
VpaK11BI	GGWCC	1 cut(s)	1989
VspI	ATTAAT	1 cut(s)	468
XapI	RAATTY	3 cut(s)	563, 1339, 2156
XceI	RCATGY	1 cut(s)	2009
XcmI	CCANNNNNNNNNTGG	2 cut(s)	304, 1017
XmiI	GTMKAC	1 cut(s)	2192
XmnI	GAANNNNTTC	2 cut(s)	552, 2310
XspI	CTAG	3 cut(s)	864, 1782, 1934
ZraI	GACGTC	1 cut(s)	1833
Zsp2I	ATGCAT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.