Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0004055

Physical Location & Seq

Genomic Coordinates Forward (+)

37926941 .. 37934675

Gene Structure 7735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG339200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2535 bp

ATGACGGCGACGGCGTTGCCACCGCCTCTGTCACGTGGAGCGACGAGGAAAGCGAAGAAGAAACAAATTCAACAGCAACACGCAGAGCTGGAGCGTTTGGATTCTCTCCCATGGAACCCCTCCTCTGTCCCTCTCCCTAATGACAATGACGATGCTGACCCTTTCTCCCATGTCAATGGCCTCGAAGGAGGTTTTCTTATGCTTGAAGAGATTGATGAGGCTGATTATGGCTTAGAAATTCCTGCACTAGAAGTAGAAAATAGAAATCGAAACGATAAGTCTAAGCCAACTAAAAAGTCCAAGAAACGAAAGCATGACCAACTTGATGCGAGTGATACCTTGGTTGAGGAGGTTATTGCTGAAGAGAGATTGGACAAGGATGAGAAACACATGACTAAGAAGGAGAAAACGAAGAAGAAGAAGAAGAAGCTGGAGGAACCTCAGAAAATTGAGGACAGTGATGATAATGGTGGCAGTGAAGTTGAAGAGAAAGACAATGATGGGGATGTCGGTTCAAAGAAGAAAACGAAGAAGAAGAAGAAGAAGAAGAAGGCGGCTGAGGAAAGCCGGAAAAGTGAAGAATCCACAGTTGATGAGAAGGATGAAGTAGAAGAGCAAGTTGATGAGGATGAATACTATGCATGGAATGAGTTGAGACTTCATCCCCTGATTATGAGATCGATATACAGGCTTGGGTTCAAAGAACCAACGGCCATCCAGAAAGCTTGTATTCCTGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGTGCTGCGGAAACAGGATCTGGCAAAACGTTAGCTTTTGGTCTGCCGATTTTGCAACGCCTGTTGGACGAAAGAGAAAAGGCTGTGAAGATGTTTGAAGAAAAGGGAGAGGAAGCAGAAAAAGTCACTTCAAAAGGCTTTTTACGGGCCCTTGTTATTACTCCTACAAGAGAACTTTCACTTCAGGTCTCTGATCATCTTAAGGCAGTTGCTAAAGATACTGATATTAGAGTGGTTCCTATAGTTGGAGGCATGTCAACGGACAAGCAGGAGAGACTTCTTAGATCAAGACCTGAGATTGTTGTTGGAACCCCAGGGAGATTATGGGAACTTATGTCTGGAGGAGAAAAGCATCTAGTTGAGTTGCATTCATTGTCTTTCTTTGTGCTGGATGAGGCTGATCGAATGATAGAAAACGGCCATTTCCATGAATTGCAATCTATTATTGACATGCTTCCTTCAAGGAATAGTTCTTCCGTACATTCCGGAAATGCACAAGATTCTGTTACCATGACCAACTTCCAGAGGAAGAAGAGACAAACATTTGTTTTATCTGCAACAATAGCACTTTCTGCTGATTTCCGGAAAAAGCTGAAGCGTAGTTCCCTAAAACCAAAGCAATCAACGTCTGATGGGGTGAATTCTATAGAAGCTCTCTCTGAGCGAGCTGGGATGAGAGACAATGTTGCCATCATTGATCTGACAAATACATCCATTTTGGCGAATAAGCTCGAAGAGTCATTTATTGAATGCAGGGAAGAAGACAAAGATGCCTATTTGTATTATATATTAAGTGTTCATGGGCAAGGTCGCACAATCATATTCTGTACATCCATTGCAGCTTTGCGACATATAACATCGCTCTTGCGCATCCTTGGCACAGATGTTTTGACACTTCATGCTCAGATGCATCAGCGAGCTCGTTTGAAGGCAATTGACCGTTTTAGGGGGAGTGAACATGGTAAACTTGTGGCTACTGATGTTGCAGCAAGAGGCCTGGATATTCCTGGTGTTCGAACAGTTATTCACTACCAGCTTCCCCATTCAGCAGAAGTTTATGTTCACAGAAGTGGTAGAACTGCTAGAGCCACTGCTGATGGGTGTAGCATTGCACTAATTGCACCAAATGAGACATCCAAATTTGCTTCTTTGTGCAAATCATTTTCTAAGGTAAGTTTTCAACGATTTCCTTTGGAGAACTCATACTTCCCAGAGGTTATGAGACGATTATCTCTTGCGCGCCAAATAGACAAGATTCTGCGGAAGGATTCCCAGGACAAAGCAAAGAAAAGCTGGTATGAAAGAAATGCAGAATTGGTTGAATTGGTTGTGGACAGTGATGAGGATGAAGAGGATAGAGTTAAAAATTATAAGCAAAAGAAAGCCAGCTCCATGAATTTAAAAAGCTTGCAGCAGGAACTGAAGATGTTGCTTTCACGTCCATTACAACCGAAGTCATTTTCACATCGTTACTTGACTGGGTCTGGTATCACACCTCTGGTGCAACATCAATTTGAAGAATTGGCTAAGCAAAAACTAGGCGATAGCAGCAACTCAGGAAAAAGAAGTAAATTGTTAGTTATTGGTCAGAATTGTGTGGAACCACTCCAAGCACTTAGGAGTTCTGGGCATGAGGTGCACATAGATGTGAAAGAGGCGGCACAAAAACGAAGGAATATGGAGAACCTAAGGAGGAAAAGAAAAGAGGAGAAAAAACGGTTGAGAGATGACCGCAGAAAGAGGAAGAAACAGCTAAAAGGGGGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

844

Amino Acids

95.53

Weight (kDa)

9.2

Isoelectric Point (pI)

49.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	237 - 444	5.1e-39	DEAD/DEAH box helicase
Helicase_C	PF00271	511 - 618	1.3e-26	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16840 AT3G16840
fragaria_vesca	FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910
malus_domestica	MD12G1094500.v1.1 MD14G1084300.v1.1
prunus_persica	Prupe.5G037600_v2.0.a1 Prupe.5G037600_v2.0.a1 Prupe.5G037600_v2.0.a1 Prupe.5G037600_v2.0.a1
pyrus_communis	pycom14g07400
rosa_chinensis	RchiOBHm_Chr3g0492441
rosa_laevigata	RLG00000022766
rosa_multiflora	Rmu_sc0003156.1_g000008 Rmu_sc0007709.1_g000003 Rmu_sc0017916.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392260
rosa_rugosa	Rorug03G0253900
rosa_samantha	Rh3AG304100 Rh3BG340000 Rh3CG337200 Rh3DG339200
rosa_wichuraiana	Rw3G026810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2136
Acc16I	TGCGCA	1 cut(s)	1634
AccII	CGCG	1 cut(s)	2005
AccIII	TCCGGA	2 cut(s)	1250, 1347
AciI	CCGC	6 cut(s)	23, 554, 773, 2026, 2423, 2497
AclI	AACGTT	1 cut(s)	794
AclWI	GGATC	1 cut(s)	790
AcoI	YGGCCR	2 cut(s)	711, 1183
AcsI	RAATTY	5 cut(s)	66, 237, 1405, 1904, 2161
AcuI	CTGAAG	4 cut(s)	381, 932, 1379, 2207
AcvI	CACGTG	1 cut(s)	35
AfaI	GTAC	2 cut(s)	1245, 1594
AfiI	CCNNNNNNNGG	2 cut(s)	1010, 1711
AflII	CTTAAG	1 cut(s)	965
AjiI	CACGTC	1 cut(s)	2204
AjnI	CCWGG	4 cut(s)	1078, 1761, 1771, 2037
AleI	CACNNNNGTG	1 cut(s)	1833
Alw21I	GWGCWC	2 cut(s)	1687, 2406
Alw26I	GTCTC	7 cut(s)	649, 958, 1033, 1294, 1437, 1889, 1981
Alw44I	GTGCAC	1 cut(s)	2402
AlwI	GGATC	1 cut(s)	790
AlwNI	CAGNNNCTG	2 cut(s)	785, 2185
Aor13HI	TCCGGA	2 cut(s)	1250, 1347
AoxI	GGCC	5 cut(s)	178, 711, 912, 1183, 1759
ApaI	GGGCCC	1 cut(s)	916
ApaLI	GTGCAC	1 cut(s)	2402
ApeKI	GCWGC	7 cut(s)	737, 740, 770, 1604, 1751, 2176, 2313
ApoI	RAATTY	5 cut(s)	66, 237, 1405, 1904, 2161
AspLEI	GCGC	3 cut(s)	1635, 2005, 2007
AspS9I	GGNCC	2 cut(s)	912, 913
AsuHPI	GGTGA	1 cut(s)	1414
AsuII	TTCGAA	1 cut(s)	1780
AxyI	CCTNAGG	1 cut(s)	2453
BaeGI	GKGCMC	2 cut(s)	916, 2406
BaeI	ACNNNNGTAYC	2 cut(s)	327, 360
BanII	GRGCYC	2 cut(s)	916, 1687
BbrPI	CACGTG	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	1533
Bbv12I	GWGCWC	2 cut(s)	1687, 2406
BbvCI	CCTCAGC	1 cut(s)	558
BbvI	GCAGC	7 cut(s)	724, 727, 757, 1616, 1763, 2188, 2325
BccI	CCATC	5 cut(s)	494, 722, 1391, 1463, 1856
BceAI	ACGGC	4 cut(s)	21, 27, 726, 1198
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	4 cut(s)	1080, 1763, 1773, 2039
BclI	TGATCA	1 cut(s)	958
BcoDI	GTCTC	7 cut(s)	649, 958, 1033, 1294, 1437, 1889, 1981
BfaI	CTAG	4 cut(s)	248, 1121, 1848, 2303
BfmI	CTRYAG	2 cut(s)	1005, 1410
BfrI	CTTAAG	1 cut(s)	965
BisI	GCNGC	9 cut(s)	555, 738, 741, 771, 1605, 1752, 2177, 2314, 2424
BlpI	GCTNAGC	1 cut(s)	2292
BlsI	GCNGC	9 cut(s)	556, 739, 742, 772, 1606, 1753, 2178, 2315, 2425
Bme1390I	CCNGG	4 cut(s)	1080, 1763, 1773, 2039
BmgBI	CACGTC	1 cut(s)	2204
BmgT120I	GGNCC	2 cut(s)	912, 913
BmiI	GGNNCC	6 cut(s)	116, 438, 914, 1002, 1075, 2367
BmrFI	CCNGG	4 cut(s)	1080, 1763, 1773, 2039
BmrI	ACTGGG	1 cut(s)	2253
BmsI	GCATC	7 cut(s)	142, 316, 1126, 1525, 1644, 1662, 1684
BmuI	ACTGGG	1 cut(s)	2253
BpiI	GAAGAC	1 cut(s)	1533
BpmI	CTGGAG	3 cut(s)	110, 452, 1125
Bpu10I	CCTNAGC	1 cut(s)	558
Bpu1102I	GCTNAGC	1 cut(s)	2292
Bpu14I	TTCGAA	1 cut(s)	1780
Bsa29I	ATCGAT	1 cut(s)	680
BsaAI	YACGTR	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	958
BsaJI	CCNNGG	6 cut(s)	110, 339, 1078, 1079, 1639, 2037
BsaWI	WCCGGW	2 cut(s)	1250, 1347
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	2 cut(s)	1010, 1711
Bse1I	ACTGG	1 cut(s)	2248
Bse21I	CCTNAGG	1 cut(s)	2453
Bse3DI	GCAATG	2 cut(s)	1599, 1872
BseAI	TCCGGA	2 cut(s)	1250, 1347
BseBI	CCWGG	4 cut(s)	1080, 1763, 1773, 2039
BseCI	ATCGAT	1 cut(s)	680
BseDI	CCNNGG	6 cut(s)	110, 339, 1078, 1079, 1639, 2037
BseLI	CCNNNNNNNGG	2 cut(s)	1010, 1711
BseMI	GCAATG	2 cut(s)	1599, 1872
BseMII	CTCAG	6 cut(s)	455, 549, 1050, 1416, 1682, 2334
BseNI	ACTGG	1 cut(s)	2248
BsePI	GCGCGC	1 cut(s)	2003
BseRI	GAGGAG	4 cut(s)	112, 362, 1122, 2486
BseSI	GKGCMC	2 cut(s)	916, 2406
BseXI	GCAGC	7 cut(s)	724, 727, 757, 1616, 1763, 2188, 2325
BseYI	CCCAGC	1 cut(s)	1433
BsgI	GTGCAG	1 cut(s)	228
Bsh1236I	CGCG	1 cut(s)	2005
BshFI	GGCC	5 cut(s)	180, 713, 914, 1185, 1761
BshVI	ATCGAT	1 cut(s)	680
BsiHKAI	GWGCWC	2 cut(s)	1687, 2406
BsiSI	CCGG	3 cut(s)	568, 1251, 1348
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	1010, 1711
BsmAI	GTCTC	7 cut(s)	649, 958, 1033, 1294, 1437, 1889, 1981
BsmBI	CGTCTC	1 cut(s)	1981
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	2 cut(s)	1132, 1520
BsnI	GGCC	5 cut(s)	180, 713, 914, 1185, 1761
Bso31I	GGTCTC	1 cut(s)	958
Bsp119I	TTCGAA	1 cut(s)	1780
Bsp120I	GGGCCC	1 cut(s)	912
Bsp1286I	GDGCHC	3 cut(s)	916, 1687, 2406
Bsp13I	TCCGGA	2 cut(s)	1250, 1347
Bsp1407I	TGTACA	1 cut(s)	1592
Bsp143I	GATC	6 cut(s)	677, 782, 958, 1049, 1165, 1462
Bsp1720I	GCTNAGC	1 cut(s)	2292
Bsp19I	CCATGG	1 cut(s)	110
BspACI	CCGC	6 cut(s)	23, 554, 773, 2026, 2423, 2497
BspANI	GGCC	5 cut(s)	180, 713, 914, 1185, 1761
BspCNI	CTCAG	6 cut(s)	454, 550, 1051, 1417, 1681, 2333
BspDI	ATCGAT	1 cut(s)	680
BspEI	TCCGGA	2 cut(s)	1250, 1347
BspFNI	CGCG	1 cut(s)	2005
BspLI	GGNNCC	6 cut(s)	116, 438, 914, 1002, 1075, 2367
BspPI	GGATC	1 cut(s)	790
BspQI	GCTCTTC	1 cut(s)	606
BspT104I	TTCGAA	1 cut(s)	1780
BspTI	CTTAAG	1 cut(s)	965
BspTNI	GGTCTC	1 cut(s)	958
BsrDI	GCAATG	2 cut(s)	1599, 1872
BsrGI	TGTACA	1 cut(s)	1592
BsrI	ACTGG	1 cut(s)	2248
BssECI	CCNNGG	6 cut(s)	110, 339, 1078, 1079, 1639, 2037
BssHII	GCGCGC	1 cut(s)	2003
BssMI	GATC	6 cut(s)	677, 782, 958, 1049, 1165, 1462
BssT1I	CCWWGG	3 cut(s)	110, 339, 1639
Bst2UI	CCWGG	4 cut(s)	1080, 1763, 1773, 2039
Bst4CI	ACNGT	6 cut(s)	458, 589, 1706, 1786, 2102, 2484
Bst6I	CTCTTC	7 cut(s)	201, 357, 480, 606, 1292, 1494, 2109
BstAFI	CTTAAG	1 cut(s)	965
BstAPI	GCANNNNNTGC	3 cut(s)	1337, 1883, 2401
BstAUI	TGTACA	1 cut(s)	1592
BstBAI	YACGTR	1 cut(s)	35
BstBI	TTCGAA	1 cut(s)	1780
BstC8I	GCNNGC	5 cut(s)	1431, 1683, 2005, 2152, 2174
BstDSI	CCRYGG	1 cut(s)	110
BstFNI	CGCG	1 cut(s)	2005
BstHHI	GCGC	3 cut(s)	1635, 2005, 2007
BstKTI	GATC	6 cut(s)	680, 785, 961, 1052, 1168, 1465
BstMAI	GTCTC	7 cut(s)	649, 958, 1033, 1294, 1437, 1889, 1981
BstMBI	GATC	6 cut(s)	677, 782, 958, 1049, 1165, 1462
BstMWI	GCNNNNNNNGC	7 cut(s)	817, 1328, 1337, 1641, 1883, 2313, 2401
BstNI	CCWGG	4 cut(s)	1080, 1763, 1773, 2039
BstNSI	RCATGY	2 cut(s)	1021, 1219
BstSCI	CCNGG	4 cut(s)	1078, 1761, 1771, 2037
BstSFI	CTRYAG	2 cut(s)	1005, 1410
BstSLI	GKGCMC	2 cut(s)	916, 2406
BstUI	CGCG	1 cut(s)	2005
BstV1I	GCAGC	7 cut(s)	724, 727, 757, 1616, 1763, 2188, 2325
BstV2I	GAAGAC	1 cut(s)	1533
BstX2I	RGATCY	1 cut(s)	782
BstXI	CCANNNNNNTGG	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	782
Bsu15I	ATCGAT	1 cut(s)	680
Bsu36I	CCTNAGG	1 cut(s)	2453
BsuRI	GGCC	5 cut(s)	180, 713, 914, 1185, 1761
BsuTUI	ATCGAT	1 cut(s)	680
BtgI	CCRYGG	1 cut(s)	110
BtgZI	GCGATG	1 cut(s)	1608
BtrI	CACGTC	1 cut(s)	2204
BtsI	GCAGTG	2 cut(s)	481, 1854
BtsIMutI	CAGTG	4 cut(s)	463, 481, 1854, 2107
Cac8I	GCNNGC	5 cut(s)	1431, 1683, 2005, 2152, 2174
CaiI	CAGNNNCTG	2 cut(s)	785, 2185
CfoI	GCGC	3 cut(s)	1635, 2005, 2007
Cfr13I	GGNCC	2 cut(s)	912, 913
ClaI	ATCGAT	1 cut(s)	680
Csp6I	GTAC	2 cut(s)	1244, 1593
CviQI	GTAC	2 cut(s)	1244, 1593
DpnI	GATC	6 cut(s)	679, 784, 960, 1051, 1167, 1464
DpnII	GATC	6 cut(s)	677, 782, 958, 1049, 1165, 1462
DraI	TTTAAA	1 cut(s)	2166
EaeI	YGGCCR	2 cut(s)	711, 1183
Eam1104I	CTCTTC	7 cut(s)	201, 357, 480, 606, 1292, 1494, 2109
EarI	CTCTTC	7 cut(s)	201, 357, 480, 606, 1292, 1494, 2109
Ecl136II	GAGCTC	1 cut(s)	1685
Eco130I	CCWWGG	3 cut(s)	110, 339, 1639
Eco147I	AGGCCT	1 cut(s)	1761
Eco24I	GRGCYC	2 cut(s)	916, 1687
Eco31I	GGTCTC	1 cut(s)	958
Eco53kI	GAGCTC	1 cut(s)	1685
Eco57I	CTGAAG	4 cut(s)	381, 932, 1379, 2207
Eco72I	CACGTG	1 cut(s)	35
Eco81I	CCTNAGG	1 cut(s)	2453
EcoICRI	GAGCTC	1 cut(s)	1685
EcoO109I	RGGNCCY	1 cut(s)	913
EcoRI	GAATTC	1 cut(s)	1405
EcoRII	CCWGG	4 cut(s)	1078, 1761, 1771, 2037
EcoT14I	CCWWGG	3 cut(s)	110, 339, 1639
EcoT22I	ATGCAT	2 cut(s)	643, 1677
EcoT38I	GRGCYC	2 cut(s)	916, 1687
ErhI	CCWWGG	3 cut(s)	110, 339, 1639
Esp3I	CGTCTC	1 cut(s)	1981
FaqI	GGGAC	1 cut(s)	113
FbaI	TGATCA	1 cut(s)	958
Fnu4HI	GCNGC	9 cut(s)	555, 738, 741, 771, 1605, 1752, 2177, 2314, 2424
FriOI	GRGCYC	2 cut(s)	916, 1687
Fsp4HI	GCNGC	9 cut(s)	555, 738, 741, 771, 1605, 1752, 2177, 2314, 2424
FspBI	CTAG	4 cut(s)	248, 1121, 1848, 2303
FspI	TGCGCA	1 cut(s)	1634
GlaI	GCGC	3 cut(s)	1634, 2004, 2006
GluI	GCNGC	9 cut(s)	555, 738, 741, 771, 1605, 1752, 2177, 2314, 2424
GsaI	CCCAGC	1 cut(s)	1437
GsuI	CTGGAG	3 cut(s)	110, 452, 1125
HaeIII	GGCC	5 cut(s)	180, 713, 914, 1185, 1761
HapII	CCGG	3 cut(s)	568, 1251, 1348
HhaI	GCGC	3 cut(s)	1635, 2005, 2007
Hin6I	GCGC	3 cut(s)	1633, 2003, 2005
HinP1I	GCGC	3 cut(s)	1633, 2003, 2005
HincII	GTYRAC	1 cut(s)	1023
HindII	GTYRAC	1 cut(s)	1023
HindIII	AAGCTT	2 cut(s)	723, 2170
HinfI	GANTC	6 cut(s)	101, 581, 1265, 1502, 2020, 2033
HpaII	CCGG	3 cut(s)	568, 1251, 1348
HphI	GGTGA	1 cut(s)	1414
Hpy166II	GTNNAC	6 cut(s)	1023, 1721, 1730, 1828, 2098, 2404
Hpy188I	TCNGA	7 cut(s)	444, 958, 1396, 1426, 1467, 1671, 2355
Hpy188III	TCNNGA	7 cut(s)	718, 1053, 1104, 1251, 1288, 1348, 2322
Hpy8I	GTNNAC	6 cut(s)	1023, 1721, 1730, 1828, 2098, 2404
Hpy99I	CGWCG	2 cut(s)	13, 46
HpyAV	CCTTC	9 cut(s)	179, 394, 544, 592, 748, 1233, 1687, 2023, 2430
HpyCH4III	ACNGT	6 cut(s)	458, 589, 1706, 1786, 2102, 2484
HpyCH4IV	ACGT	4 cut(s)	34, 794, 1391, 2203
HpyF10VI	GCNNNNNNNGC	7 cut(s)	817, 1328, 1337, 1641, 1883, 2313, 2401
HpySE526I	ACGT	4 cut(s)	34, 794, 1391, 2203
HspAI	GCGC	3 cut(s)	1633, 2003, 2005
Kpn2I	TCCGGA	2 cut(s)	1250, 1347
Ksp22I	TGATCA	1 cut(s)	958
Kzo9I	GATC	6 cut(s)	677, 782, 958, 1049, 1165, 1462
LguI	GCTCTTC	1 cut(s)	606
LmnI	GCTCC	3 cut(s)	38, 91, 2159
Lsp1109I	GCAGC	7 cut(s)	724, 727, 757, 1616, 1763, 2188, 2325
LweI	GCATC	7 cut(s)	142, 316, 1126, 1525, 1644, 1662, 1684
MaeI	CTAG	4 cut(s)	248, 1121, 1848, 2303
MaeII	ACGT	4 cut(s)	34, 794, 1391, 2203
MaeIII	GTNAC	4 cut(s)	30, 889, 1270, 2234
MalI	GATC	6 cut(s)	679, 784, 960, 1051, 1167, 1464
MboI	GATC	6 cut(s)	677, 782, 958, 1049, 1165, 1462
MfeI	CAATTG	1 cut(s)	1698
MflI	RGATCY	1 cut(s)	782
MhlI	GDGCHC	3 cut(s)	916, 1687, 2406
MlyI	GAGTC	1 cut(s)	1511
MmeI	TCCRAC	3 cut(s)	810, 991, 1051
Mph1103I	ATGCAT	2 cut(s)	643, 1677
MroI	TCCGGA	2 cut(s)	1250, 1347
MseI	TTAA	4 cut(s)	966, 1556, 2127, 2165
MslI	CAYNNNNRTG	5 cut(s)	174, 1191, 1833, 2409, 2411
MspCI	CTTAAG	1 cut(s)	965
MspI	CCGG	3 cut(s)	568, 1251, 1348
MspR9I	CCNGG	4 cut(s)	1080, 1763, 1773, 2039
MunI	CAATTG	1 cut(s)	1698
Mva1269I	GAATGC	2 cut(s)	1132, 1520
MvaI	CCWGG	4 cut(s)	1080, 1763, 1773, 2039
MvnI	CGCG	1 cut(s)	2005
MwoI	GCNNNNNNNGC	7 cut(s)	817, 1328, 1337, 1641, 1883, 2313, 2401
NcoI	CCATGG	1 cut(s)	110
NdeII	GATC	6 cut(s)	677, 782, 958, 1049, 1165, 1462
NlaIV	GGNNCC	6 cut(s)	116, 438, 914, 1002, 1075, 2367
NmuCI	GTSAC	2 cut(s)	30, 889
NsbI	TGCGCA	1 cut(s)	1634
NsiI	ATGCAT	2 cut(s)	643, 1677
NspI	RCATGY	2 cut(s)	1021, 1219
NspV	TTCGAA	1 cut(s)	1780
OliI	CACNNNNGTG	1 cut(s)	1833
PasI	CCCWGGG	1 cut(s)	1079
PauI	GCGCGC	1 cut(s)	2003
PceI	AGGCCT	1 cut(s)	1761
PciSI	GCTCTTC	1 cut(s)	606
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 50
PctI	GAATGC	2 cut(s)	1132, 1520
PfeI	GAWTC	5 cut(s)	101, 581, 1265, 2020, 2033
PflFI	GACNNNGTC	1 cut(s)	2245
PkrI	GCNGC	9 cut(s)	556, 739, 742, 772, 1606, 1753, 2178, 2315, 2425
PleI	GAGTC	1 cut(s)	1510
PmaCI	CACGTG	1 cut(s)	35
PmlI	CACGTG	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	1510
Ppu21I	YACGTR	1 cut(s)	35
PsiI	TTATAA	1 cut(s)	2136
Psp124BI	GAGCTC	1 cut(s)	1687
Psp1406I	AACGTT	1 cut(s)	794
Psp6I	CCWGG	4 cut(s)	1078, 1761, 1771, 2037
PspCI	CACGTG	1 cut(s)	35
PspFI	CCCAGC	1 cut(s)	1433
PspGI	CCWGG	4 cut(s)	1078, 1761, 1771, 2037
PspN4I	GGNNCC	6 cut(s)	116, 438, 914, 1002, 1075, 2367
PspOMI	GGGCCC	1 cut(s)	912
PspPI	GGNCC	2 cut(s)	912, 913
PstNI	CAGNNNCTG	2 cut(s)	785, 2185
PsuI	RGATCY	1 cut(s)	782
PsyI	GACNNNGTC	1 cut(s)	2245
PteI	GCGCGC	1 cut(s)	2003
RsaI	GTAC	2 cut(s)	1245, 1594
RsaNI	GTAC	2 cut(s)	1244, 1593
RseI	CAYNNNNRTG	5 cut(s)	174, 1191, 1833, 2409, 2411
SacI	GAGCTC	1 cut(s)	1687
SapI	GCTCTTC	1 cut(s)	606
SaqAI	TTAA	4 cut(s)	966, 1556, 2127, 2165
SatI	GCNGC	9 cut(s)	555, 738, 741, 771, 1605, 1752, 2177, 2314, 2424
Sau3AI	GATC	6 cut(s)	677, 782, 958, 1049, 1165, 1462
Sau96I	GGNCC	2 cut(s)	912, 913
SchI	GAGTC	1 cut(s)	1511
ScrFI	CCNGG	4 cut(s)	1080, 1763, 1773, 2039
SduI	GDGCHC	3 cut(s)	916, 1687, 2406
SfaNI	GCATC	7 cut(s)	142, 316, 1126, 1525, 1644, 1662, 1684
SfcI	CTRYAG	2 cut(s)	1005, 1410
SfuI	TTCGAA	1 cut(s)	1780
SmiMI	CAYNNNNRTG	5 cut(s)	174, 1191, 1833, 2409, 2411
SmlI	CTYRAG	1 cut(s)	965
SmoI	CTYRAG	1 cut(s)	965
SseBI	AGGCCT	1 cut(s)	1761
SsiI	CCGC	6 cut(s)	23, 554, 773, 2026, 2423, 2497
SspMI	CTAG	4 cut(s)	248, 1121, 1848, 2303
SstI	GAGCTC	1 cut(s)	1687
StuI	AGGCCT	1 cut(s)	1761
StyD4I	CCNGG	4 cut(s)	1078, 1761, 1771, 2037
StyI	CCWWGG	3 cut(s)	110, 339, 1639
TaaI	ACNGT	6 cut(s)	458, 589, 1706, 1786, 2102, 2484
TaiI	ACGT	4 cut(s)	37, 797, 1394, 2206
TaqI	TCGA	6 cut(s)	183, 268, 680, 1168, 1497, 1780
TatI	WGTACW	1 cut(s)	1592
TauI	GCSGC	2 cut(s)	557, 2426
TfiI	GAWTC	5 cut(s)	101, 581, 1265, 2020, 2033
Tru1I	TTAA	4 cut(s)	966, 1556, 2127, 2165
Tru9I	TTAA	4 cut(s)	966, 1556, 2127, 2165
TscAI	CASTG	4 cut(s)	463, 481, 1861, 2107
TseFI	GTSAC	2 cut(s)	30, 889
TseI	GCWGC	7 cut(s)	737, 740, 770, 1604, 1751, 2176, 2313
Tsp45I	GTSAC	2 cut(s)	30, 889
TspGWI	ACGGA	2 cut(s)	1040, 1231
TspRI	CASTG	4 cut(s)	463, 481, 1861, 2107
Tth111I	GACNNNGTC	1 cut(s)	2245
Vha464I	CTTAAG	1 cut(s)	965
VneI	GTGCAC	1 cut(s)	2402
XapI	RAATTY	5 cut(s)	66, 237, 1405, 1904, 2161
XceI	RCATGY	2 cut(s)	1021, 1219
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1086
XspI	CTAG	4 cut(s)	248, 1121, 1848, 2303
Zsp2I	ATGCAT	2 cut(s)	643, 1677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.