Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0004055

Physical Location & Seq

Genomic Coordinates Forward (+)

37041293 .. 37049530

Gene Structure 8238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G026810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2529 bp

ATGACGGCGACGCCGTTGCCACCGCCTCTGTCACGTGGAGCGACGAGGAAAGCGAAGAAGAAACAAATTCAACAGCAACACGCAGAGCTGGAGCGTTTGGATTCTCTCCCATGGAACCCCTCCTCTGTCCCTCTCCCTAATGACAATGACGATGCTGACCCTTTCTCCCATGTCAATGGCCTCGAAGGAGGTTTTCTTATGCTTGAAGAGATTGATGAGGCTGATTATGGCTTAGAAATTCCTGCACTAGAAGTAGAAAATAGAAATCGAAACGATAAGTCTAAGCCAACTAAAAAGTCCAAGAAACGAAAGCATGACCAACTTGATGCAAGTGATACCTTGGTTGAGGAGGTTATTGCTGAAGAGAGATTGGACAAGGATGAGAAACACATGACTAAGAAGGAGAAAACGAAGAAGAAGAAGAAGAAGCTGGAGGAAGCTCAGAAAATTGAGGACAGTGATGATAATGGTGGCAGTGAAGCTGAAGAGAAAGACAATGATGGGGATGTCGGTTCAAAGAAGAAAACGAAGAAGAAGAAGAAGAAGAAGGCGGCCGAGGAAAGCCAGAAAAATGAGGAATCCACAGCTGATGAGAAGGATGAAGTAGAAGAGCAAGTTGATGAGGATGAATACTATGCATGGAATGAGTTGAGACTTCATCCCCTGATTATGAGATCGATATACAGGCTTGGGTTCAAAGAACCAACTGCCATCCAGAAGGCTTGTATTCCTGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGTGCTGCGGAAACAGGATCTGGCAAAACGTTAGCTTTTGGTCTGCCGATTTTGCAACGCCTGTTGGACGAAAGAGAAAAGGCTGTGAAGATGTTTGAAGAAAAGGGAGAGGAAGCAGAAAAAGTCACTTCAAAAGGCTTTTTACGGGCCCTTGTTATTACTCCTACGAGAGAACTTTCACTTCAGGTCTCTGATCATCTTAAGGCAGTTGCTAAAGATACTGATATTAGAGTGGTTCCTATAGTTGGAGGCATGTCAACGGACAAGCAGGAGAGACTTCTTAGATCAAGACCTGAGATTGTTGTTGGAACCCCAGGGAGATTATGGGAACTTATGTCTGGAGGAGAAAAGCATCTAGTTGAGTTGCATTCATTGTCTTTCTTTGTGCTGGATGAGGCTGATCGAATGATAGAAAACGGCCATTTCCATGAATTGCAATCTATTATTGACATGCTTCCTTCAAGGAATAGTTCTTCCGTACATTCCGGGAATGCACAAGATTCTGTTACCATGACCAACTTCCAGAGGAAGAAGAGACAAACATTTGTTTTATCTGCAACAATAGCACTTTCTGCTGATTTCCGGAAAAAGCTGAAGCGTAGTTCCCTAAAACCAAAGCAATCAACGTCTGATGGGGTGAATTCTATAGAAGCTCTCTCTGAGCGAGCAGGGATGAGAGACAATGTTGCCATCATTGATCTGACAAATACATCCATTTTGGCGAATAAGCTCGAAGAGTCATTTATTGAATGCAGGGAAGAAGACAAAGATGCCTATTTGTATTATATATTAAGTGTTCATGGGCAAGGTCGCACAATCATATTCTGTACATCCATTGCAGCTTTGCGACATATAACATCGCTCTTGCGCATCCTTGGCACAGATGTTTTGACACTTCATGCTCAGATGCATCAGCGAGCTCGTTTGAAGGCAATTGACCGTTTTAGGGGGAGTGAACATGGTAAACTTGTGGCTACTGATGTTGCAGCAAGAGGCCTGGATATTCCTGGTGTTCGAACAGTTATTCACTACCAGCTTCCCCATTCAGCAGAAGTTTATGTTCACAGAAGTGGTAGAACTGCTAGAGCCACTGCTGATGGGTGTAGCATTGCACTAATTGCACCAAATGAGACATCCAAATTTGCTTCTTTGTGCAAATCATTTTCTAAGGTAAGTTTTCAACGATTTCCTTTGGAGAACTCATACTTCCCAGAGGTTATGAGACGATTATCTCTTGCGCGCCAAATAGACAAGATTCTGCGGAAGGATTCCCAGGACAAAGCAAAGAAAAGCTGGTATGAAAGAAATGCAGAATTGGTTGAATTGGTTGTGGACAGTGATGAGGATGAAGAGGATAGAGTTAAAAATTATAAGCAAAAGAAAGCCAGCTCCATGAATTTAAAAAGCTTGCAGCAGGAACTGAAGATGTTGCTTTCACGTCCATTACAACCAAAGTCATTTTCACATCGTTACTTGACTGGGTCTGGTATCACACCTCTGGTGCAACATCAATTTGAAGAATTGGCTAAGCAAAAACTAGGCGATAGCAGCAACTCAGGAAAAAGAAGTAAATTGTTAGTTATTGGTCAGAATTGTGTGGAACCACTCCAAGCACTTAGGAGTTCTGGGCATGAGGTGCACATAGATGTGAAAGAGGCGGCACAAAAACGAAGGAATATGGAGAACCTAAGGAGGAAAAGAAAAGAGGAGAAAAAACAAAACAGAAAACAGAAAAAAAAAAAAAAAAAAAAAACTAGTTTATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

842

Amino Acids

95.17

Weight (kDa)

9.22

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	236 - 443	5.1e-39	DEAD/DEAH box helicase
Helicase_C	PF00271	510 - 617	1.3e-26	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16840 AT3G16840
fragaria_vesca	FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910
malus_domestica	MD12G1094500.v1.1 MD14G1084300.v1.1
prunus_persica	Prupe.5G037600_v2.0.a1 Prupe.5G037600_v2.0.a1 Prupe.5G037600_v2.0.a1 Prupe.5G037600_v2.0.a1
pyrus_communis	pycom14g07400
rosa_chinensis	RchiOBHm_Chr3g0492441
rosa_laevigata	RLG00000022766
rosa_multiflora	Rmu_sc0003156.1_g000008 Rmu_sc0007709.1_g000003 Rmu_sc0017916.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392260
rosa_rugosa	Rorug03G0253900
rosa_samantha	Rh3AG304100 Rh3BG340000 Rh3CG337200 Rh3DG339200
rosa_wichuraiana	Rw3G026810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2133
Acc16I	TGCGCA	1 cut(s)	1631
AccII	CGCG	1 cut(s)	2002
AccIII	TCCGGA	1 cut(s)	1344
AciI	CCGC	5 cut(s)	23, 551, 770, 2023, 2420
AclI	AACGTT	1 cut(s)	791
AclWI	GGATC	1 cut(s)	787
AcoI	YGGCCR	2 cut(s)	552, 1180
AcsI	RAATTY	5 cut(s)	66, 237, 1402, 1901, 2158
AcuI	CTGAAG	5 cut(s)	381, 504, 929, 1376, 2204
AcvI	CACGTG	1 cut(s)	35
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	2 cut(s)	1242, 1591
AfiI	CCNNNNNNNGG	2 cut(s)	1007, 1708
AflII	CTTAAG	1 cut(s)	962
AhlI	ACTAGT	1 cut(s)	2516
AjiI	CACGTC	1 cut(s)	2201
AjnI	CCWGG	4 cut(s)	1075, 1758, 1768, 2034
AjuI	GAANNNNNNNTTGG	2 cut(s)	2206, 2238
AleI	CACNNNNGTG	1 cut(s)	1830
Alw21I	GWGCWC	2 cut(s)	1684, 2403
Alw26I	GTCTC	7 cut(s)	646, 955, 1030, 1291, 1434, 1886, 1978
Alw44I	GTGCAC	1 cut(s)	2399
AlwI	GGATC	1 cut(s)	787
AlwNI	CAGNNNCTG	2 cut(s)	782, 2182
Aor13HI	TCCGGA	1 cut(s)	1344
AoxI	GGCC	5 cut(s)	178, 552, 909, 1180, 1756
ApaI	GGGCCC	1 cut(s)	913
ApaLI	GTGCAC	1 cut(s)	2399
ApeKI	GCWGC	7 cut(s)	734, 737, 767, 1601, 1748, 2173, 2310
ApoI	RAATTY	5 cut(s)	66, 237, 1402, 1901, 2158
AspLEI	GCGC	3 cut(s)	1632, 2002, 2004
AspS9I	GGNCC	2 cut(s)	909, 910
AsuC2I	CCSGG	1 cut(s)	1249
AsuHPI	GGTGA	1 cut(s)	1411
AsuII	TTCGAA	1 cut(s)	1777
AxyI	CCTNAGG	1 cut(s)	2450
BaeGI	GKGCMC	2 cut(s)	913, 2403
BaeI	ACNNNNGTAYC	2 cut(s)	327, 360
BanII	GRGCYC	2 cut(s)	913, 1684
BbrPI	CACGTG	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	1530
Bbv12I	GWGCWC	2 cut(s)	1684, 2403
BbvI	GCAGC	7 cut(s)	721, 724, 754, 1613, 1760, 2185, 2322
BccI	CCATC	5 cut(s)	494, 719, 1388, 1460, 1853
BceAI	ACGGC	2 cut(s)	21, 1195
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	4 cut(s)	1077, 1760, 1770, 2036
BclI	TGATCA	1 cut(s)	955
BcnI	CCSGG	1 cut(s)	1249
BcoDI	GTCTC	7 cut(s)	646, 955, 1030, 1291, 1434, 1886, 1978
BcuI	ACTAGT	1 cut(s)	2516
BfaI	CTAG	5 cut(s)	248, 1118, 1845, 2300, 2517
BfmI	CTRYAG	2 cut(s)	1002, 1407
BfrI	CTTAAG	1 cut(s)	962
BisI	GCNGC	9 cut(s)	552, 735, 738, 768, 1602, 1749, 2174, 2311, 2421
BlpI	GCTNAGC	1 cut(s)	2289
BlsI	GCNGC	9 cut(s)	553, 736, 739, 769, 1603, 1750, 2175, 2312, 2422
Bme1390I	CCNGG	5 cut(s)	1077, 1249, 1760, 1770, 2036
BmgBI	CACGTC	1 cut(s)	2201
BmgT120I	GGNCC	2 cut(s)	909, 910
BmiI	GGNNCC	5 cut(s)	116, 911, 999, 1072, 2364
BmrFI	CCNGG	5 cut(s)	1077, 1249, 1760, 1770, 2036
BmrI	ACTGGG	1 cut(s)	2250
BmsI	GCATC	7 cut(s)	142, 316, 1123, 1522, 1641, 1659, 1681
BmuI	ACTGGG	1 cut(s)	2250
BpiI	GAAGAC	1 cut(s)	1530
BpmI	CTGGAG	3 cut(s)	110, 452, 1122
Bpu1102I	GCTNAGC	1 cut(s)	2289
Bpu14I	TTCGAA	1 cut(s)	1777
BpuMI	CCSGG	1 cut(s)	1249
Bsa29I	ATCGAT	1 cut(s)	677
BsaAI	YACGTR	1 cut(s)	35
BsaHI	GRCGYC	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	955
BsaJI	CCNNGG	7 cut(s)	110, 339, 555, 1075, 1076, 1636, 2034
BsaWI	WCCGGW	1 cut(s)	1344
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	2 cut(s)	1007, 1708
Bse1I	ACTGG	1 cut(s)	2245
Bse21I	CCTNAGG	1 cut(s)	2450
Bse3DI	GCAATG	2 cut(s)	1596, 1869
BseAI	TCCGGA	1 cut(s)	1344
BseBI	CCWGG	4 cut(s)	1077, 1760, 1770, 2036
BseCI	ATCGAT	1 cut(s)	677
BseDI	CCNNGG	7 cut(s)	110, 339, 555, 1075, 1076, 1636, 2034
BseLI	CCNNNNNNNGG	2 cut(s)	1007, 1708
BseMI	GCAATG	2 cut(s)	1596, 1869
BseMII	CTCAG	5 cut(s)	455, 1047, 1413, 1679, 2331
BseNI	ACTGG	1 cut(s)	2245
BsePI	GCGCGC	1 cut(s)	2000
BseRI	GAGGAG	4 cut(s)	112, 362, 1119, 2483
BseSI	GKGCMC	2 cut(s)	913, 2403
BseX3I	CGGCCG	1 cut(s)	552
BseXI	GCAGC	7 cut(s)	721, 724, 754, 1613, 1760, 2185, 2322
BsgI	GTGCAG	1 cut(s)	228
Bsh1236I	CGCG	1 cut(s)	2002
Bsh1285I	CGRYCG	1 cut(s)	555
BshFI	GGCC	5 cut(s)	180, 554, 911, 1182, 1758
BshVI	ATCGAT	1 cut(s)	677
BsiEI	CGRYCG	1 cut(s)	555
BsiHKAI	GWGCWC	2 cut(s)	1684, 2403
BsiSI	CCGG	2 cut(s)	1248, 1345
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	1007, 1708
BsmAI	GTCTC	7 cut(s)	646, 955, 1030, 1291, 1434, 1886, 1978
BsmBI	CGTCTC	1 cut(s)	1978
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	3 cut(s)	1129, 1258, 1517
BsnI	GGCC	5 cut(s)	180, 554, 911, 1182, 1758
Bso31I	GGTCTC	1 cut(s)	955
Bsp119I	TTCGAA	1 cut(s)	1777
Bsp120I	GGGCCC	1 cut(s)	909
Bsp1286I	GDGCHC	3 cut(s)	913, 1684, 2403
Bsp13I	TCCGGA	1 cut(s)	1344
Bsp1407I	TGTACA	1 cut(s)	1589
Bsp143I	GATC	6 cut(s)	674, 779, 955, 1046, 1162, 1459
Bsp1720I	GCTNAGC	1 cut(s)	2289
Bsp19I	CCATGG	1 cut(s)	110
BspACI	CCGC	5 cut(s)	23, 551, 770, 2023, 2420
BspANI	GGCC	5 cut(s)	180, 554, 911, 1182, 1758
BspCNI	CTCAG	5 cut(s)	454, 1048, 1414, 1678, 2330
BspDI	ATCGAT	1 cut(s)	677
BspEI	TCCGGA	1 cut(s)	1344
BspFNI	CGCG	1 cut(s)	2002
BspLI	GGNNCC	5 cut(s)	116, 911, 999, 1072, 2364
BspPI	GGATC	1 cut(s)	787
BspQI	GCTCTTC	1 cut(s)	603
BspT104I	TTCGAA	1 cut(s)	1777
BspTI	CTTAAG	1 cut(s)	962
BspTNI	GGTCTC	1 cut(s)	955
BsrDI	GCAATG	2 cut(s)	1596, 1869
BsrGI	TGTACA	1 cut(s)	1589
BsrI	ACTGG	1 cut(s)	2245
BssECI	CCNNGG	7 cut(s)	110, 339, 555, 1075, 1076, 1636, 2034
BssHII	GCGCGC	1 cut(s)	2000
BssMI	GATC	6 cut(s)	674, 779, 955, 1046, 1162, 1459
BssNI	GRCGYC	1 cut(s)	11
BssT1I	CCWWGG	3 cut(s)	110, 339, 1636
Bst2UI	CCWGG	4 cut(s)	1077, 1760, 1770, 2036
Bst4CI	ACNGT	4 cut(s)	458, 1703, 1783, 2099
Bst6I	CTCTTC	7 cut(s)	201, 357, 480, 603, 1289, 1491, 2106
BstACI	GRCGYC	1 cut(s)	11
BstAFI	CTTAAG	1 cut(s)	962
BstAPI	GCANNNNNTGC	3 cut(s)	1334, 1880, 2398
BstAUI	TGTACA	1 cut(s)	1589
BstBAI	YACGTR	1 cut(s)	35
BstBI	TTCGAA	1 cut(s)	1777
BstC8I	GCNNGC	5 cut(s)	1428, 1680, 2002, 2149, 2171
BstDSI	CCRYGG	1 cut(s)	110
BstFNI	CGCG	1 cut(s)	2002
BstHHI	GCGC	3 cut(s)	1632, 2002, 2004
BstKTI	GATC	6 cut(s)	677, 782, 958, 1049, 1165, 1462
BstMAI	GTCTC	7 cut(s)	646, 955, 1030, 1291, 1434, 1886, 1978
BstMBI	GATC	6 cut(s)	674, 779, 955, 1046, 1162, 1459
BstMCI	CGRYCG	1 cut(s)	555
BstMWI	GCNNNNNNNGC	7 cut(s)	814, 1325, 1334, 1638, 1880, 2310, 2398
BstNI	CCWGG	4 cut(s)	1077, 1760, 1770, 2036
BstNSI	RCATGY	2 cut(s)	1018, 1216
BstSCI	CCNGG	5 cut(s)	1075, 1247, 1758, 1768, 2034
BstSFI	CTRYAG	2 cut(s)	1002, 1407
BstSLI	GKGCMC	2 cut(s)	913, 2403
BstUI	CGCG	1 cut(s)	2002
BstV1I	GCAGC	7 cut(s)	721, 724, 754, 1613, 1760, 2185, 2322
BstV2I	GAAGAC	1 cut(s)	1530
BstX2I	RGATCY	1 cut(s)	779
BstXI	CCANNNNNNTGG	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	779
BstZI	CGGCCG	1 cut(s)	552
Bsu15I	ATCGAT	1 cut(s)	677
Bsu36I	CCTNAGG	1 cut(s)	2450
BsuRI	GGCC	5 cut(s)	180, 554, 911, 1182, 1758
BsuTUI	ATCGAT	1 cut(s)	677
BtgI	CCRYGG	1 cut(s)	110
BtgZI	GCGATG	1 cut(s)	1605
BtrI	CACGTC	1 cut(s)	2201
BtsI	GCAGTG	2 cut(s)	481, 1851
BtsIMutI	CAGTG	4 cut(s)	463, 481, 1851, 2104
Cac8I	GCNNGC	5 cut(s)	1428, 1680, 2002, 2149, 2171
CaiI	CAGNNNCTG	2 cut(s)	782, 2182
CfoI	GCGC	3 cut(s)	1632, 2002, 2004
Cfr13I	GGNCC	2 cut(s)	909, 910
ClaI	ATCGAT	1 cut(s)	677
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	2 cut(s)	1241, 1590
CviQI	GTAC	2 cut(s)	1241, 1590
DpnI	GATC	6 cut(s)	676, 781, 957, 1048, 1164, 1461
DpnII	GATC	6 cut(s)	674, 779, 955, 1046, 1162, 1459
DraI	TTTAAA	1 cut(s)	2163
EaeI	YGGCCR	2 cut(s)	552, 1180
EagI	CGGCCG	1 cut(s)	552
Eam1104I	CTCTTC	7 cut(s)	201, 357, 480, 603, 1289, 1491, 2106
EarI	CTCTTC	7 cut(s)	201, 357, 480, 603, 1289, 1491, 2106
Ecl136II	GAGCTC	1 cut(s)	1682
EclXI	CGGCCG	1 cut(s)	552
Eco130I	CCWWGG	3 cut(s)	110, 339, 1636
Eco147I	AGGCCT	1 cut(s)	1758
Eco24I	GRGCYC	2 cut(s)	913, 1684
Eco31I	GGTCTC	1 cut(s)	955
Eco52I	CGGCCG	1 cut(s)	552
Eco53kI	GAGCTC	1 cut(s)	1682
Eco57I	CTGAAG	5 cut(s)	381, 504, 929, 1376, 2204
Eco72I	CACGTG	1 cut(s)	35
Eco81I	CCTNAGG	1 cut(s)	2450
EcoICRI	GAGCTC	1 cut(s)	1682
EcoO109I	RGGNCCY	1 cut(s)	910
EcoRI	GAATTC	1 cut(s)	1402
EcoRII	CCWGG	4 cut(s)	1075, 1758, 1768, 2034
EcoT14I	CCWWGG	3 cut(s)	110, 339, 1636
EcoT22I	ATGCAT	2 cut(s)	640, 1674
EcoT38I	GRGCYC	2 cut(s)	913, 1684
ErhI	CCWWGG	3 cut(s)	110, 339, 1636
Esp3I	CGTCTC	1 cut(s)	1978
FaqI	GGGAC	1 cut(s)	113
FbaI	TGATCA	1 cut(s)	955
Fnu4HI	GCNGC	9 cut(s)	552, 735, 738, 768, 1602, 1749, 2174, 2311, 2421
FriOI	GRGCYC	2 cut(s)	913, 1684
Fsp4HI	GCNGC	9 cut(s)	552, 735, 738, 768, 1602, 1749, 2174, 2311, 2421
FspBI	CTAG	5 cut(s)	248, 1118, 1845, 2300, 2517
FspI	TGCGCA	1 cut(s)	1631
GlaI	GCGC	3 cut(s)	1631, 2001, 2003
GluI	GCNGC	9 cut(s)	552, 735, 738, 768, 1602, 1749, 2174, 2311, 2421
GsuI	CTGGAG	3 cut(s)	110, 452, 1122
HaeIII	GGCC	5 cut(s)	180, 554, 911, 1182, 1758
HapII	CCGG	2 cut(s)	1248, 1345
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	3 cut(s)	1632, 2002, 2004
Hin1I	GRCGYC	1 cut(s)	11
Hin6I	GCGC	3 cut(s)	1630, 2000, 2002
HinP1I	GCGC	3 cut(s)	1630, 2000, 2002
HincII	GTYRAC	1 cut(s)	1020
HindII	GTYRAC	1 cut(s)	1020
HindIII	AAGCTT	1 cut(s)	2167
HinfI	GANTC	6 cut(s)	101, 578, 1262, 1499, 2017, 2030
HpaII	CCGG	2 cut(s)	1248, 1345
HphI	GGTGA	1 cut(s)	1411
Hpy166II	GTNNAC	6 cut(s)	1020, 1718, 1727, 1825, 2095, 2401
Hpy188I	TCNGA	7 cut(s)	444, 955, 1393, 1423, 1464, 1668, 2352
Hpy188III	TCNNGA	6 cut(s)	715, 1050, 1101, 1285, 1345, 2319
Hpy8I	GTNNAC	6 cut(s)	1020, 1718, 1727, 1825, 2095, 2401
Hpy99I	CGWCG	2 cut(s)	13, 46
HpyCH4III	ACNGT	4 cut(s)	458, 1703, 1783, 2099
HpyCH4IV	ACGT	4 cut(s)	34, 791, 1388, 2200
HpyF10VI	GCNNNNNNNGC	7 cut(s)	814, 1325, 1334, 1638, 1880, 2310, 2398
HpySE526I	ACGT	4 cut(s)	34, 791, 1388, 2200
Hsp92I	GRCGYC	1 cut(s)	11
HspAI	GCGC	3 cut(s)	1630, 2000, 2002
Kpn2I	TCCGGA	1 cut(s)	1344
Ksp22I	TGATCA	1 cut(s)	955
Kzo9I	GATC	6 cut(s)	674, 779, 955, 1046, 1162, 1459
LguI	GCTCTTC	1 cut(s)	603
LmnI	GCTCC	3 cut(s)	38, 91, 2156
Lsp1109I	GCAGC	7 cut(s)	721, 724, 754, 1613, 1760, 2185, 2322
LweI	GCATC	7 cut(s)	142, 316, 1123, 1522, 1641, 1659, 1681
MaeI	CTAG	5 cut(s)	248, 1118, 1845, 2300, 2517
MaeII	ACGT	4 cut(s)	34, 791, 1388, 2200
MaeIII	GTNAC	4 cut(s)	30, 886, 1267, 2231
MalI	GATC	6 cut(s)	676, 781, 957, 1048, 1164, 1461
MboI	GATC	6 cut(s)	674, 779, 955, 1046, 1162, 1459
MfeI	CAATTG	1 cut(s)	1695
MflI	RGATCY	1 cut(s)	779
MhlI	GDGCHC	3 cut(s)	913, 1684, 2403
MlyI	GAGTC	1 cut(s)	1508
MmeI	TCCRAC	3 cut(s)	807, 988, 1048
Mph1103I	ATGCAT	2 cut(s)	640, 1674
MroI	TCCGGA	1 cut(s)	1344
MseI	TTAA	4 cut(s)	963, 1553, 2124, 2162
MslI	CAYNNNNRTG	5 cut(s)	174, 1188, 1830, 2406, 2408
MspA1I	CMGCKG	1 cut(s)	587
MspCI	CTTAAG	1 cut(s)	962
MspI	CCGG	2 cut(s)	1248, 1345
MspR9I	CCNGG	5 cut(s)	1077, 1249, 1760, 1770, 2036
MunI	CAATTG	1 cut(s)	1695
Mva1269I	GAATGC	3 cut(s)	1129, 1258, 1517
MvaI	CCWGG	4 cut(s)	1077, 1760, 1770, 2036
MvnI	CGCG	1 cut(s)	2002
MwoI	GCNNNNNNNGC	7 cut(s)	814, 1325, 1334, 1638, 1880, 2310, 2398
NciI	CCSGG	1 cut(s)	1249
NcoI	CCATGG	1 cut(s)	110
NdeII	GATC	6 cut(s)	674, 779, 955, 1046, 1162, 1459
NlaIV	GGNNCC	5 cut(s)	116, 911, 999, 1072, 2364
NmeAIII	GCCGAG	1 cut(s)	580
NmuCI	GTSAC	2 cut(s)	30, 886
NsbI	TGCGCA	1 cut(s)	1631
NsiI	ATGCAT	2 cut(s)	640, 1674
NspI	RCATGY	2 cut(s)	1018, 1216
NspV	TTCGAA	1 cut(s)	1777
OliI	CACNNNNGTG	1 cut(s)	1830
PasI	CCCWGGG	1 cut(s)	1076
PauI	GCGCGC	1 cut(s)	2000
PceI	AGGCCT	1 cut(s)	1758
PciSI	GCTCTTC	1 cut(s)	603
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 50
PctI	GAATGC	3 cut(s)	1129, 1258, 1517
PfeI	GAWTC	5 cut(s)	101, 578, 1262, 2017, 2030
PflFI	GACNNNGTC	1 cut(s)	2242
PfoI	TCCNGGA	1 cut(s)	1247
PkrI	GCNGC	9 cut(s)	553, 736, 739, 769, 1603, 1750, 2175, 2312, 2422
PleI	GAGTC	1 cut(s)	1507
PmaCI	CACGTG	1 cut(s)	35
PmlI	CACGTG	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	1507
Ppu21I	YACGTR	1 cut(s)	35
PsiI	TTATAA	1 cut(s)	2133
Psp124BI	GAGCTC	1 cut(s)	1684
Psp1406I	AACGTT	1 cut(s)	791
Psp6I	CCWGG	4 cut(s)	1075, 1758, 1768, 2034
PspCI	CACGTG	1 cut(s)	35
PspGI	CCWGG	4 cut(s)	1075, 1758, 1768, 2034
PspN4I	GGNNCC	5 cut(s)	116, 911, 999, 1072, 2364
PspOMI	GGGCCC	1 cut(s)	909
PspPI	GGNCC	2 cut(s)	909, 910
PstNI	CAGNNNCTG	2 cut(s)	782, 2182
PsuI	RGATCY	1 cut(s)	779
PsyI	GACNNNGTC	1 cut(s)	2242
PteI	GCGCGC	1 cut(s)	2000
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	2 cut(s)	1242, 1591
RsaNI	GTAC	2 cut(s)	1241, 1590
RseI	CAYNNNNRTG	5 cut(s)	174, 1188, 1830, 2406, 2408
SacI	GAGCTC	1 cut(s)	1684
SapI	GCTCTTC	1 cut(s)	603
SaqAI	TTAA	4 cut(s)	963, 1553, 2124, 2162
SatI	GCNGC	9 cut(s)	552, 735, 738, 768, 1602, 1749, 2174, 2311, 2421
Sau3AI	GATC	6 cut(s)	674, 779, 955, 1046, 1162, 1459
Sau96I	GGNCC	2 cut(s)	909, 910
SchI	GAGTC	1 cut(s)	1508
ScrFI	CCNGG	5 cut(s)	1077, 1249, 1760, 1770, 2036
SduI	GDGCHC	3 cut(s)	913, 1684, 2403
SfaNI	GCATC	7 cut(s)	142, 316, 1123, 1522, 1641, 1659, 1681
SfcI	CTRYAG	2 cut(s)	1002, 1407
SfuI	TTCGAA	1 cut(s)	1777
SmiMI	CAYNNNNRTG	5 cut(s)	174, 1188, 1830, 2406, 2408
SmlI	CTYRAG	1 cut(s)	962
SmoI	CTYRAG	1 cut(s)	962
SpeI	ACTAGT	1 cut(s)	2516
SseBI	AGGCCT	1 cut(s)	1758
SsiI	CCGC	5 cut(s)	23, 551, 770, 2023, 2420
SspMI	CTAG	5 cut(s)	248, 1118, 1845, 2300, 2517
SstI	GAGCTC	1 cut(s)	1684
StuI	AGGCCT	1 cut(s)	1758
StyD4I	CCNGG	5 cut(s)	1075, 1247, 1758, 1768, 2034
StyI	CCWWGG	3 cut(s)	110, 339, 1636
TaaI	ACNGT	4 cut(s)	458, 1703, 1783, 2099
TaiI	ACGT	4 cut(s)	37, 794, 1391, 2203
TaqI	TCGA	6 cut(s)	183, 268, 677, 1165, 1494, 1777
TatI	WGTACW	1 cut(s)	1589
TauI	GCSGC	2 cut(s)	554, 2423
TfiI	GAWTC	5 cut(s)	101, 578, 1262, 2017, 2030
Tru1I	TTAA	4 cut(s)	963, 1553, 2124, 2162
Tru9I	TTAA	4 cut(s)	963, 1553, 2124, 2162
TscAI	CASTG	4 cut(s)	463, 481, 1858, 2104
TseFI	GTSAC	2 cut(s)	30, 886
TseI	GCWGC	7 cut(s)	734, 737, 767, 1601, 1748, 2173, 2310
Tsp45I	GTSAC	2 cut(s)	30, 886
TspGWI	ACGGA	2 cut(s)	1037, 1228
TspRI	CASTG	4 cut(s)	463, 481, 1858, 2104
Tth111I	GACNNNGTC	1 cut(s)	2242
Vha464I	CTTAAG	1 cut(s)	962
VneI	GTGCAC	1 cut(s)	2399
XapI	RAATTY	5 cut(s)	66, 237, 1402, 1901, 2158
XceI	RCATGY	2 cut(s)	1018, 1216
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1083
XspI	CTAG	5 cut(s)	248, 1118, 1845, 2300, 2517
Zsp2I	ATGCAT	2 cut(s)	640, 1674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.