Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004055

Physical Location & Seq

Genomic Coordinates Forward (+)

39195645 .. 39203838

Gene Structure 8194 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45533

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2514 bp

ATGACGGCGACGCCGTTGCCACCGCCTCTGTCACGTGGAGCGACGAGGAAAGCGAAGAAGAAACAAATTCAACAGCAACACGCAGAGCTGGAGCGTTTGGATTCTCTCCCATGGAACCCCTCCTCTGTCCCTCTCCCTAATGACAATGACGATGCTGACCCTTTCTCCCATGTCAATGGCCTCGAAGGAGGTTTTCTTATGCTTGAAGAGATTGATGAGGCTGATTATGGCTTAGAAATTCCTGCACTAGAAGTAGAAAATAGAAATCGAAACGATAGGTCTAAGCCAACTAAAAAGTCCAAGAAACGAAAGCATGACCTACTTGATGCAAGTGATACCTTGGTTGAGGAGGTTATTGCTGAAGAGAGATTGGACAAGGATGAGAAACACATGACTAAGAAGGAGAAAACGAAGAAGAAGAAGAAGCTGGAGGAACCTCAGAAAATTGGGGACAGTGATGATAATGGTGGCAGTGAAGTTGAAGAGAAAGACAATGATGGGGATGTCGGTTCAAAGAAGAAGAAGAAGAAGGTGGCCGAGGAAAGCCAGAAAAATGAGGAATCCACAGTTGATGAGAAGGATGAAGTAGAAGAGCAAGTTGATGAGGATGAATACTATGCATGGAATGAGTTGAGACTTCATCCCCTGATTATGAGATCGATATACAGGCTTGGGTTCAAAGAACCAACGGCCATCCAGAAAGCTTGTATTCCTGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGTGCTGCGGAAACAGGATCTGGCAAAACGTTAGCTTTTGGTCTGCCGATTTTGCAACGCCTGTTGGACGAAAGAGAAAAGGCTGCGAAGATGTTTGAAGAAAAGGGAGAGGAAGCAGAAAAAGTCACTTCAAAAGGCTTTTTACGGGCCCTTGTTATTACTCCTACAAGAGAACTTTCACTTCAGGTCTCTGATCATCTTAAGGCAGTTGCTAAGGATACTGATATTAGAGTGGTTCCAATAGTTGGAGGCATGTCAACGGACAAGCAGGAGAGACTTCTTAGATCAAGACCCGAGATTGTTGTTGGAACCCCAGGAAGATTATGGGAACTTATGTCTGGAGGAGAAAAGCATCTAGTTGAGTTGCATTCATTGTCTTTCTTTGTGCTGGATGAGGCTGATCGAATGATAGAAAACGGCCATTTCCATGAATTGCAGTCTATTATTGACATGCTTCCTTTAAGGAATAGTTCTGCTGTACATTCCGGAAATGCACAAGATTCTGTTACCATGACCAACTTCCAGAGGAAGAAGAGACAAACATTTGTTTTATCTGCAACAATAGCACTTTCTGCTGATTTCCGGAAAAAGCTGAAGCGTAGTTCTCTAAAACCAAAGCATTCAACGTCTGATGGGGTGAATTCTATAGAAGCTCTTTCTGAGCGAGCAGGGATGAGAGACAATGTTGCCATCATTGATCTGACAAATACATCCATTTTGGCGAATAAGCTCGAAGAGTCATTTATTGAATGCAGGGAAGAAGACAAAGATGCCTATTTGTATTATATATTAAGTGTTCATGGGCAAGGTCGCACAATCATATTCTGTACGTCCATTGCAGCTTTGCGACATATAACATCACTCTTGCGCATCCTTGGCACAGATGTTTTGACACTTCATGCTCAGATGCATCAGCGAGCCCGTTTGAAGGCAATTGACCGTTTTAGGGGGAGTGAACATGGTAAACTTGTGGCTACTGATGTTGCAGCAAGAGGCCTGGATATTCCTGGTGTTCGAACAGTTATTCACTACCAGCTTCCCCATTCAGCAGAAGTTTATGTTCACAGAAGTGGTAGAACTGCTAGAGCCACTGCTGATGGGTGTAGCATTGCACTAATTGCGCCAAATGAGACATCCAAATTTGCTTCTTTGTGCAAATCATTTTCTAAGGTAAGTTTTCAACGATTTCCTTTGGAGAACTCATACTTCCCAGAGGTTATGAGACGATTATCTCTTGCGCGCCAAATAGACAAGATTCTGCGGAAGGATTCCCAGGACAAAGCAAAGAAAAGCTGGTATGAAAGAAATGCAGAATTGGTTGAATTGGTTGTGGACAGTGATGAGGATGAAGAGGATAGAGTTAAGAATTATAAGCAAAAGAAAGCCAGCTCCATGAATTTAAAAAGCTTGCAGCAGGAACTGAAGATGTTGCTTTCACATCCATTACAACCAAAGTCATTTTCACATCGTTACTTGACTGGGTCTGGTATCACACCTCTGGTGCAACATCAATTTGAAGAATTGGCTAAGCAAAAACTAGGCGATAGCAGCAACTCAGGAAAAAGAAGTAAATTGTTAGTTATTGGTCAGAATTGTGTGGAACCACTCCAAGCACTTCGGAGTTCTGGGCATGAGGTGCACATAGATGTGAAAGAGGCGGCACAAAAACGAAGGAATATGGAGAACCTAAGGAGGAAAAGAAAAGAGGAGAAAAAACGGTTGAGAGATGACCGCAGAAAGAGGAAGAAACAGCTAAAAGGGGGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

837

Amino Acids

94.63

Weight (kDa)

8.96

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	230 - 437	5.2e-39	DEAD/DEAH box helicase
Helicase_C	PF00271	504 - 611	1.3e-26	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16840 AT3G16840
fragaria_vesca	FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910
malus_domestica	MD12G1094500.v1.1 MD14G1084300.v1.1
prunus_persica	Prupe.5G037600_v2.0.a1 Prupe.5G037600_v2.0.a1 Prupe.5G037600_v2.0.a1 Prupe.5G037600_v2.0.a1
pyrus_communis	pycom14g07400
rosa_chinensis	RchiOBHm_Chr3g0492441
rosa_laevigata	RLG00000022766
rosa_multiflora	Rmu_sc0003156.1_g000008 Rmu_sc0007709.1_g000003 Rmu_sc0017916.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392260
rosa_rugosa	Rorug03G0253900
rosa_samantha	Rh3AG304100 Rh3BG340000 Rh3CG337200 Rh3DG339200
rosa_wichuraiana	Rw3G026810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2115
Acc16I	TGCGCA	1 cut(s)	1613
AccB7I	CCANNNNNTGG	1 cut(s)	989
AccII	CGCG	1 cut(s)	1984
AccIII	TCCGGA	2 cut(s)	1229, 1326
AciI	CCGC	5 cut(s)	23, 752, 2005, 2402, 2476
AclI	AACGTT	1 cut(s)	773
AclWI	GGATC	1 cut(s)	769
AcoI	YGGCCR	3 cut(s)	534, 690, 1162
AcsI	RAATTY	5 cut(s)	66, 237, 1384, 1883, 2140
AcuI	CTGAAG	4 cut(s)	381, 911, 1358, 2186
AcvI	CACGTG	1 cut(s)	35
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	2 cut(s)	1224, 1573
AfiI	CCNNNNNNNGG	3 cut(s)	989, 1672, 1690
AflII	CTTAAG	1 cut(s)	944
AjnI	CCWGG	4 cut(s)	1057, 1740, 1750, 2016
AjuI	GAANNNNNNNTTGG	2 cut(s)	2188, 2220
AleI	CACNNNNGTG	1 cut(s)	1812
Alw21I	GWGCWC	1 cut(s)	2385
Alw26I	GTCTC	7 cut(s)	628, 937, 1012, 1273, 1416, 1868, 1960
Alw44I	GTGCAC	1 cut(s)	2381
AlwI	GGATC	1 cut(s)	769
AlwNI	CAGNNNCTG	2 cut(s)	764, 2164
Ama87I	CYCGRG	1 cut(s)	1037
Aor13HI	TCCGGA	2 cut(s)	1229, 1326
AoxI	GGCC	6 cut(s)	178, 534, 690, 891, 1162, 1738
ApaI	GGGCCC	1 cut(s)	895
ApaLI	GTGCAC	1 cut(s)	2381
ApeKI	GCWGC	8 cut(s)	716, 719, 749, 827, 1583, 1730, 2155, 2292
ApoI	RAATTY	5 cut(s)	66, 237, 1384, 1883, 2140
AspLEI	GCGC	4 cut(s)	1614, 1867, 1984, 1986
AspS9I	GGNCC	2 cut(s)	891, 892
AsuHPI	GGTGA	1 cut(s)	1393
AsuII	TTCGAA	1 cut(s)	1759
AvaI	CYCGRG	1 cut(s)	1037
AxyI	CCTNAGG	1 cut(s)	2432
BaeGI	GKGCMC	2 cut(s)	895, 2385
BaeI	ACNNNNGTAYC	2 cut(s)	327, 360
BanII	GRGCYC	2 cut(s)	895, 1666
BbrPI	CACGTG	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	1512
Bbv12I	GWGCWC	1 cut(s)	2385
BbvI	GCAGC	8 cut(s)	703, 706, 736, 814, 1595, 1742, 2167, 2304
BccI	CCATC	5 cut(s)	491, 701, 1370, 1442, 1835
BceAI	ACGGC	3 cut(s)	21, 705, 1177
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	4 cut(s)	1059, 1742, 1752, 2018
BciVI	GTATCC	1 cut(s)	955
BclI	TGATCA	1 cut(s)	937
BcoDI	GTCTC	7 cut(s)	628, 937, 1012, 1273, 1416, 1868, 1960
BfaI	CTAG	4 cut(s)	248, 1100, 1827, 2282
BfmI	CTRYAG	1 cut(s)	1389
BfrI	CTTAAG	1 cut(s)	944
BfuI	GTATCC	1 cut(s)	955
BisI	GCNGC	9 cut(s)	717, 720, 750, 828, 1584, 1731, 2156, 2293, 2403
BlpI	GCTNAGC	1 cut(s)	2271
BlsI	GCNGC	9 cut(s)	718, 721, 751, 829, 1585, 1732, 2157, 2294, 2404
Bme1390I	CCNGG	4 cut(s)	1059, 1742, 1752, 2018
BmeT110I	CYCGRG	1 cut(s)	1037
BmgT120I	GGNCC	2 cut(s)	891, 892
BmiI	GGNNCC	6 cut(s)	116, 435, 893, 981, 1054, 2346
BmrFI	CCNGG	4 cut(s)	1059, 1742, 1752, 2018
BmrI	ACTGGG	1 cut(s)	2232
BmsI	GCATC	7 cut(s)	142, 316, 1105, 1504, 1623, 1641, 1663
BmuI	ACTGGG	1 cut(s)	2232
BpiI	GAAGAC	1 cut(s)	1512
BpmI	CTGGAG	3 cut(s)	110, 449, 1104
Bpu10I	CCTNAGC	1 cut(s)	957
Bpu1102I	GCTNAGC	1 cut(s)	2271
Bpu14I	TTCGAA	1 cut(s)	1759
Bsa29I	ATCGAT	1 cut(s)	659
BsaAI	YACGTR	1 cut(s)	35
BsaHI	GRCGYC	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	937
BsaJI	CCNNGG	6 cut(s)	110, 339, 537, 1057, 1618, 2016
BsaWI	WCCGGW	2 cut(s)	1229, 1326
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	3 cut(s)	989, 1672, 1690
Bse1I	ACTGG	1 cut(s)	2227
Bse21I	CCTNAGG	1 cut(s)	2432
Bse3DI	GCAATG	2 cut(s)	1578, 1851
BseAI	TCCGGA	2 cut(s)	1229, 1326
BseBI	CCWGG	4 cut(s)	1059, 1742, 1752, 2018
BseCI	ATCGAT	1 cut(s)	659
BseDI	CCNNGG	6 cut(s)	110, 339, 537, 1057, 1618, 2016
BseLI	CCNNNNNNNGG	3 cut(s)	989, 1672, 1690
BseMI	GCAATG	2 cut(s)	1578, 1851
BseMII	CTCAG	4 cut(s)	452, 1395, 1661, 2313
BseNI	ACTGG	1 cut(s)	2227
BsePI	GCGCGC	1 cut(s)	1982
BseRI	GAGGAG	4 cut(s)	112, 362, 1101, 2465
BseSI	GKGCMC	2 cut(s)	895, 2385
BseXI	GCAGC	8 cut(s)	703, 706, 736, 814, 1595, 1742, 2167, 2304
BsgI	GTGCAG	1 cut(s)	228
Bsh1236I	CGCG	1 cut(s)	1984
BshFI	GGCC	6 cut(s)	180, 536, 692, 893, 1164, 1740
BshVI	ATCGAT	1 cut(s)	659
BsiHKAI	GWGCWC	1 cut(s)	2385
BsiHKCI	CYCGRG	1 cut(s)	1037
BsiSI	CCGG	2 cut(s)	1230, 1327
BslFI	GGGAC	2 cut(s)	113, 464
BslI	CCNNNNNNNGG	3 cut(s)	989, 1672, 1690
BsmAI	GTCTC	7 cut(s)	628, 937, 1012, 1273, 1416, 1868, 1960
BsmBI	CGTCTC	1 cut(s)	1960
BsmFI	GGGAC	2 cut(s)	113, 464
BsmI	GAATGC	3 cut(s)	1111, 1363, 1499
BsnI	GGCC	6 cut(s)	180, 536, 692, 893, 1164, 1740
Bso31I	GGTCTC	1 cut(s)	937
BsoBI	CYCGRG	1 cut(s)	1037
Bsp119I	TTCGAA	1 cut(s)	1759
Bsp120I	GGGCCC	1 cut(s)	891
Bsp1286I	GDGCHC	3 cut(s)	895, 1666, 2385
Bsp13I	TCCGGA	2 cut(s)	1229, 1326
Bsp1407I	TGTACA	1 cut(s)	1222
Bsp143I	GATC	6 cut(s)	656, 761, 937, 1028, 1144, 1441
Bsp1720I	GCTNAGC	1 cut(s)	2271
Bsp19I	CCATGG	1 cut(s)	110
BspACI	CCGC	5 cut(s)	23, 752, 2005, 2402, 2476
BspANI	GGCC	6 cut(s)	180, 536, 692, 893, 1164, 1740
BspCNI	CTCAG	4 cut(s)	451, 1396, 1660, 2312
BspDI	ATCGAT	1 cut(s)	659
BspEI	TCCGGA	2 cut(s)	1229, 1326
BspFNI	CGCG	1 cut(s)	1984
BspLI	GGNNCC	6 cut(s)	116, 435, 893, 981, 1054, 2346
BspPI	GGATC	1 cut(s)	769
BspQI	GCTCTTC	1 cut(s)	585
BspT104I	TTCGAA	1 cut(s)	1759
BspTI	CTTAAG	1 cut(s)	944
BspTNI	GGTCTC	1 cut(s)	937
BsrDI	GCAATG	2 cut(s)	1578, 1851
BsrGI	TGTACA	1 cut(s)	1222
BsrI	ACTGG	1 cut(s)	2227
BssECI	CCNNGG	6 cut(s)	110, 339, 537, 1057, 1618, 2016
BssHII	GCGCGC	1 cut(s)	1982
BssMI	GATC	6 cut(s)	656, 761, 937, 1028, 1144, 1441
BssNI	GRCGYC	1 cut(s)	11
BssT1I	CCWWGG	3 cut(s)	110, 339, 1618
Bst2UI	CCWGG	4 cut(s)	1059, 1742, 1752, 2018
Bst4CI	ACNGT	6 cut(s)	455, 568, 1685, 1765, 2081, 2463
Bst6I	CTCTTC	7 cut(s)	201, 357, 477, 585, 1271, 1473, 2088
BstACI	GRCGYC	1 cut(s)	11
BstAFI	CTTAAG	1 cut(s)	944
BstAPI	GCANNNNNTGC	3 cut(s)	1316, 1862, 2380
BstAUI	TGTACA	1 cut(s)	1222
BstBAI	YACGTR	1 cut(s)	35
BstBI	TTCGAA	1 cut(s)	1759
BstC8I	GCNNGC	5 cut(s)	1410, 1662, 1984, 2131, 2153
BstDSI	CCRYGG	1 cut(s)	110
BstFNI	CGCG	1 cut(s)	1984
BstHHI	GCGC	4 cut(s)	1614, 1867, 1984, 1986
BstKTI	GATC	6 cut(s)	659, 764, 940, 1031, 1147, 1444
BstMAI	GTCTC	7 cut(s)	628, 937, 1012, 1273, 1416, 1868, 1960
BstMBI	GATC	6 cut(s)	656, 761, 937, 1028, 1144, 1441
BstMWI	GCNNNNNNNGC	7 cut(s)	796, 1307, 1316, 1620, 1862, 2292, 2380
BstNI	CCWGG	4 cut(s)	1059, 1742, 1752, 2018
BstNSI	RCATGY	2 cut(s)	1000, 1198
BstSCI	CCNGG	4 cut(s)	1057, 1740, 1750, 2016
BstSFI	CTRYAG	1 cut(s)	1389
BstSLI	GKGCMC	2 cut(s)	895, 2385
BstUI	CGCG	1 cut(s)	1984
BstV1I	GCAGC	8 cut(s)	703, 706, 736, 814, 1595, 1742, 2167, 2304
BstV2I	GAAGAC	1 cut(s)	1512
BstX2I	RGATCY	1 cut(s)	761
BstXI	CCANNNNNNTGG	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	761
Bsu15I	ATCGAT	1 cut(s)	659
Bsu36I	CCTNAGG	1 cut(s)	2432
BsuI	GTATCC	1 cut(s)	955
BsuRI	GGCC	6 cut(s)	180, 536, 692, 893, 1164, 1740
BsuTUI	ATCGAT	1 cut(s)	659
BtgI	CCRYGG	1 cut(s)	110
BtsI	GCAGTG	2 cut(s)	478, 1833
BtsIMutI	CAGTG	4 cut(s)	460, 478, 1833, 2086
Cac8I	GCNNGC	5 cut(s)	1410, 1662, 1984, 2131, 2153
CaiI	CAGNNNCTG	2 cut(s)	764, 2164
CfoI	GCGC	4 cut(s)	1614, 1867, 1984, 1986
Cfr13I	GGNCC	2 cut(s)	891, 892
ClaI	ATCGAT	1 cut(s)	659
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	2 cut(s)	1223, 1572
CviQI	GTAC	2 cut(s)	1223, 1572
DpnI	GATC	6 cut(s)	658, 763, 939, 1030, 1146, 1443
DpnII	GATC	6 cut(s)	656, 761, 937, 1028, 1144, 1441
DraI	TTTAAA	1 cut(s)	2145
EaeI	YGGCCR	3 cut(s)	534, 690, 1162
Eam1104I	CTCTTC	7 cut(s)	201, 357, 477, 585, 1271, 1473, 2088
EarI	CTCTTC	7 cut(s)	201, 357, 477, 585, 1271, 1473, 2088
Eco130I	CCWWGG	3 cut(s)	110, 339, 1618
Eco147I	AGGCCT	1 cut(s)	1740
Eco24I	GRGCYC	2 cut(s)	895, 1666
Eco31I	GGTCTC	1 cut(s)	937
Eco57I	CTGAAG	4 cut(s)	381, 911, 1358, 2186
Eco72I	CACGTG	1 cut(s)	35
Eco81I	CCTNAGG	1 cut(s)	2432
Eco88I	CYCGRG	1 cut(s)	1037
EcoO109I	RGGNCCY	1 cut(s)	892
EcoRI	GAATTC	1 cut(s)	1384
EcoRII	CCWGG	4 cut(s)	1057, 1740, 1750, 2016
EcoT14I	CCWWGG	3 cut(s)	110, 339, 1618
EcoT22I	ATGCAT	2 cut(s)	622, 1656
EcoT38I	GRGCYC	2 cut(s)	895, 1666
ErhI	CCWWGG	3 cut(s)	110, 339, 1618
Esp3I	CGTCTC	1 cut(s)	1960
FaqI	GGGAC	2 cut(s)	113, 464
FbaI	TGATCA	1 cut(s)	937
Fnu4HI	GCNGC	9 cut(s)	717, 720, 750, 828, 1584, 1731, 2156, 2293, 2403
FriOI	GRGCYC	2 cut(s)	895, 1666
Fsp4HI	GCNGC	9 cut(s)	717, 720, 750, 828, 1584, 1731, 2156, 2293, 2403
FspBI	CTAG	4 cut(s)	248, 1100, 1827, 2282
FspI	TGCGCA	1 cut(s)	1613
GlaI	GCGC	4 cut(s)	1613, 1866, 1983, 1985
GluI	GCNGC	9 cut(s)	717, 720, 750, 828, 1584, 1731, 2156, 2293, 2403
GsuI	CTGGAG	3 cut(s)	110, 449, 1104
HaeIII	GGCC	6 cut(s)	180, 536, 692, 893, 1164, 1740
HapII	CCGG	2 cut(s)	1230, 1327
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	4 cut(s)	1614, 1867, 1984, 1986
Hin1I	GRCGYC	1 cut(s)	11
Hin6I	GCGC	4 cut(s)	1612, 1865, 1982, 1984
HinP1I	GCGC	4 cut(s)	1612, 1865, 1982, 1984
HincII	GTYRAC	1 cut(s)	1002
HindII	GTYRAC	1 cut(s)	1002
HindIII	AAGCTT	2 cut(s)	702, 2149
HinfI	GANTC	6 cut(s)	101, 560, 1244, 1481, 1999, 2012
HpaII	CCGG	2 cut(s)	1230, 1327
HphI	GGTGA	1 cut(s)	1393
Hpy166II	GTNNAC	6 cut(s)	1002, 1700, 1709, 1807, 2077, 2383
Hpy188I	TCNGA	8 cut(s)	441, 937, 1375, 1405, 1446, 1650, 2334, 2364
Hpy188III	TCNNGA	7 cut(s)	697, 1032, 1083, 1230, 1267, 1327, 2301
Hpy8I	GTNNAC	6 cut(s)	1002, 1700, 1709, 1807, 2077, 2383
Hpy99I	CGWCG	2 cut(s)	13, 46
HpyAV	CCTTC	8 cut(s)	179, 394, 523, 571, 727, 1666, 2002, 2409
HpyCH4III	ACNGT	6 cut(s)	455, 568, 1685, 1765, 2081, 2463
HpyCH4IV	ACGT	4 cut(s)	34, 773, 1370, 1574
HpyF10VI	GCNNNNNNNGC	7 cut(s)	796, 1307, 1316, 1620, 1862, 2292, 2380
HpySE526I	ACGT	4 cut(s)	34, 773, 1370, 1574
Hsp92I	GRCGYC	1 cut(s)	11
HspAI	GCGC	4 cut(s)	1612, 1865, 1982, 1984
Kpn2I	TCCGGA	2 cut(s)	1229, 1326
Ksp22I	TGATCA	1 cut(s)	937
Kzo9I	GATC	6 cut(s)	656, 761, 937, 1028, 1144, 1441
LguI	GCTCTTC	1 cut(s)	585
LmnI	GCTCC	3 cut(s)	38, 91, 2138
Lsp1109I	GCAGC	8 cut(s)	703, 706, 736, 814, 1595, 1742, 2167, 2304
LweI	GCATC	7 cut(s)	142, 316, 1105, 1504, 1623, 1641, 1663
MaeI	CTAG	4 cut(s)	248, 1100, 1827, 2282
MaeII	ACGT	4 cut(s)	34, 773, 1370, 1574
MaeIII	GTNAC	4 cut(s)	30, 868, 1249, 2213
MalI	GATC	6 cut(s)	658, 763, 939, 1030, 1146, 1443
MboI	GATC	6 cut(s)	656, 761, 937, 1028, 1144, 1441
MfeI	CAATTG	1 cut(s)	1677
MflI	RGATCY	1 cut(s)	761
MhlI	GDGCHC	3 cut(s)	895, 1666, 2385
MlyI	GAGTC	1 cut(s)	1490
MmeI	TCCRAC	3 cut(s)	789, 970, 1030
Mph1103I	ATGCAT	2 cut(s)	622, 1656
MroI	TCCGGA	2 cut(s)	1229, 1326
MseI	TTAA	5 cut(s)	945, 1205, 1535, 2106, 2144
MslI	CAYNNNNRTG	5 cut(s)	174, 1170, 1812, 2388, 2390
MspCI	CTTAAG	1 cut(s)	944
MspI	CCGG	2 cut(s)	1230, 1327
MspR9I	CCNGG	4 cut(s)	1059, 1742, 1752, 2018
MunI	CAATTG	1 cut(s)	1677
Mva1269I	GAATGC	3 cut(s)	1111, 1363, 1499
MvaI	CCWGG	4 cut(s)	1059, 1742, 1752, 2018
MvnI	CGCG	1 cut(s)	1984
MwoI	GCNNNNNNNGC	7 cut(s)	796, 1307, 1316, 1620, 1862, 2292, 2380
NcoI	CCATGG	1 cut(s)	110
NdeII	GATC	6 cut(s)	656, 761, 937, 1028, 1144, 1441
NlaIV	GGNNCC	6 cut(s)	116, 435, 893, 981, 1054, 2346
NmeAIII	GCCGAG	1 cut(s)	562
NmuCI	GTSAC	2 cut(s)	30, 868
NsbI	TGCGCA	1 cut(s)	1613
NsiI	ATGCAT	2 cut(s)	622, 1656
NspI	RCATGY	2 cut(s)	1000, 1198
NspV	TTCGAA	1 cut(s)	1759
OliI	CACNNNNGTG	1 cut(s)	1812
PauI	GCGCGC	1 cut(s)	1982
PceI	AGGCCT	1 cut(s)	1740
PciSI	GCTCTTC	1 cut(s)	585
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 50
PctI	GAATGC	3 cut(s)	1111, 1363, 1499
PfeI	GAWTC	5 cut(s)	101, 560, 1244, 1999, 2012
PflFI	GACNNNGTC	1 cut(s)	2224
PflMI	CCANNNNNTGG	1 cut(s)	989
PkrI	GCNGC	9 cut(s)	718, 721, 751, 829, 1585, 1732, 2157, 2294, 2404
PleI	GAGTC	1 cut(s)	1489
PmaCI	CACGTG	1 cut(s)	35
PmlI	CACGTG	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	1489
Ppu21I	YACGTR	1 cut(s)	35
PsiI	TTATAA	1 cut(s)	2115
Psp1406I	AACGTT	1 cut(s)	773
Psp6I	CCWGG	4 cut(s)	1057, 1740, 1750, 2016
PspCI	CACGTG	1 cut(s)	35
PspGI	CCWGG	4 cut(s)	1057, 1740, 1750, 2016
PspN4I	GGNNCC	6 cut(s)	116, 435, 893, 981, 1054, 2346
PspOMI	GGGCCC	1 cut(s)	891
PspPI	GGNCC	2 cut(s)	891, 892
PstNI	CAGNNNCTG	2 cut(s)	764, 2164
PsuI	RGATCY	1 cut(s)	761
PsyI	GACNNNGTC	1 cut(s)	2224
PteI	GCGCGC	1 cut(s)	1982
RsaI	GTAC	2 cut(s)	1224, 1573
RsaNI	GTAC	2 cut(s)	1223, 1572
RseI	CAYNNNNRTG	5 cut(s)	174, 1170, 1812, 2388, 2390
SapI	GCTCTTC	1 cut(s)	585
SaqAI	TTAA	5 cut(s)	945, 1205, 1535, 2106, 2144
SatI	GCNGC	9 cut(s)	717, 720, 750, 828, 1584, 1731, 2156, 2293, 2403
Sau3AI	GATC	6 cut(s)	656, 761, 937, 1028, 1144, 1441
Sau96I	GGNCC	2 cut(s)	891, 892
SchI	GAGTC	1 cut(s)	1490
ScrFI	CCNGG	4 cut(s)	1059, 1742, 1752, 2018
SduI	GDGCHC	3 cut(s)	895, 1666, 2385
SfaNI	GCATC	7 cut(s)	142, 316, 1105, 1504, 1623, 1641, 1663
SfcI	CTRYAG	1 cut(s)	1389
SfuI	TTCGAA	1 cut(s)	1759
SmiMI	CAYNNNNRTG	5 cut(s)	174, 1170, 1812, 2388, 2390
SmlI	CTYRAG	1 cut(s)	944
SmoI	CTYRAG	1 cut(s)	944
SseBI	AGGCCT	1 cut(s)	1740
SsiI	CCGC	5 cut(s)	23, 752, 2005, 2402, 2476
SspMI	CTAG	4 cut(s)	248, 1100, 1827, 2282
StuI	AGGCCT	1 cut(s)	1740
StyD4I	CCNGG	4 cut(s)	1057, 1740, 1750, 2016
StyI	CCWWGG	3 cut(s)	110, 339, 1618
TaaI	ACNGT	6 cut(s)	455, 568, 1685, 1765, 2081, 2463
TaiI	ACGT	4 cut(s)	37, 776, 1373, 1577
TaqI	TCGA	6 cut(s)	183, 268, 659, 1147, 1476, 1759
TatI	WGTACW	1 cut(s)	1222
TauI	GCSGC	1 cut(s)	2405
TfiI	GAWTC	5 cut(s)	101, 560, 1244, 1999, 2012
Tru1I	TTAA	5 cut(s)	945, 1205, 1535, 2106, 2144
Tru9I	TTAA	5 cut(s)	945, 1205, 1535, 2106, 2144
TscAI	CASTG	4 cut(s)	460, 478, 1840, 2086
TseFI	GTSAC	2 cut(s)	30, 868
TseI	GCWGC	8 cut(s)	716, 719, 749, 827, 1583, 1730, 2155, 2292
Tsp45I	GTSAC	2 cut(s)	30, 868
TspGWI	ACGGA	1 cut(s)	1019
TspRI	CASTG	4 cut(s)	460, 478, 1840, 2086
Tth111I	GACNNNGTC	1 cut(s)	2224
Van91I	CCANNNNNTGG	1 cut(s)	989
Vha464I	CTTAAG	1 cut(s)	944
VneI	GTGCAC	1 cut(s)	2381
XapI	RAATTY	5 cut(s)	66, 237, 1384, 1883, 2140
XceI	RCATGY	2 cut(s)	1000, 1198
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1065
XspI	CTAG	4 cut(s)	248, 1100, 1827, 2282
Zsp2I	ATGCAT	2 cut(s)	622, 1656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.