Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003156.1

Orthogroup ID

OG0004055

Physical Location & Seq

Genomic Coordinates Reverse (-)

29385 .. 40140

Gene Structure 10756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003156.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2904 bp

atggctcctaaattcgagctctcaatctcagaatttgcactgatactcttgagaaattctgactgtgagaacccacttgaactaaatgaaaaggaagaagacgaagaaggagaaacagatgaagttgttgaggaacacattgactggtcaacagtctcttttctgcccgggcgtgccagcaccattcgggtgcggtcgtcgggggtgtcccttgacctgacttctttcaagcgattgtggacgaggagagcaccaacctcatcgtgggattctttgtgcctcgtgccgcctagacggtctaggcggaggttaggcggtctaggcgctggggctgggcgctggggctgggcgctggattctggaatttttttttcgtcgctggattgtggaattttcctcctttggtattgcatctatggaggcaagaagagcttcttgattgggatttcaagttcggtattgctcttcgagaggcgagatgggatgagctctgagattgagagagaggatttgggggaggagaagagcgtggagatgaatatgggtttagctttgttgggggtttggatccattcactttcttcctctccatcgtacaatccaagctcctggtcatacaagtgttcgatctcaacctctccggccaccggtactgctccatcggcctggaattctctctttgatccggcctcgccggcgtcgaagccttccctggctctagcgtgcctttcctcacagtcagagacggcgttcgcttcgctttactcacctggagcgagtacgactcgccctgaaatgaaaccgataaactccggctcgtatgtgaagaaaagaaaagaaagaccgcctctgtcacgtggagcgacgaggaaagcgaagaagaaacaaattcaacagcaacacgcagagctggagcgtttggattctctcccatggaacccctcctctgtccctctccctaatgacaatgacgatgctgaccctttctcccatgtcaatggcctcgaaggaggttttcttatgcttgaagagattgatgaggctgattatggcttagaaattcctgcactagaagtagaaaatagaaatcgaaacgataagtctaagccaactaaaaagtccaagaaacgaaagcatgaccaacttgatgcaagtgatatcttggttgaggaggttattggtgaagagagattggacaaggatgagaaacacatgactaagaaggagaaaacgaagaagaagaagaagaagctggaggaacctcagaaaatcgaggacagtgatgataatggtggcagtgaagttgaagagaaagacaatgatggggatgtcggttcaaagaagaaaacgaagaagaagaagaagaaggcggccgaggaaagccagaaaaatgaggaatccacagctgatgagaaggatgaagtagaagagcaagttgatgaggatgaatactatgcatggaatgagttgagacttcatcccctgattatgagatcgatatacaggcttgggttcaaagaaccaacggccatccagaaagcttgtattcctgctgctgctcatcaagggaaggatgttgttggtgctgcggaaacaggatctggcaaaacgttagcttttggtctgccgattttgcaacgcctgttggacgaaagagaaaaggctgtgaagatgtttgaagaaaagggagaggaagcagaaaaagtcacttcaaaaggctttttacgggcccttgttattactcctacgagagaactttcacttcaggtctctgatcatcttaaggcagttgctaaagatactgatattagagtggttcctatagttggaggcatgtcaacggacaagcaggagagacttcttagatcaagacctgagattgttgttggaaccccagggagattatgggaacttatgtctggaggagaaaagcatctagttgagttgcattcattgtctttctttgtgctggatgaggctgatcgaatgatagaaaacggccatttccatgaattgcagtctattattgacatgcttccttcaaggaatagttctgccgtacattccggaaatgcacaagattctgttaccacgaccaacttccagaggaagaagagacaaacatttgttttatctgcaacaatagcactttctgctgatttccggaaaaagctgaagcgtagttccctaaaaccaaagcaatcaacgtctgatggggtgaattctatagaagctctctctgagcgagcagggatgagagacaatgttgccatcattgatctgacaaatacatccattttggcgaataagctcgaagagtcatttattgaatgcagggaagaagacaaagatgcctatttgtattatatattaagtgttcatgggcaaggtcgcacaatcatattctgtacatccattgcagctttgcgacatataacatcgctcttgcgcatccttggcacagatgttttgacacttcatgctcagatgcatcagcgagctcgtttgaaggcaattgaccgttttagggggagtgaacatggtaaacttgtggctactgatgttgcagcaagaggcctggatattcctggtgttcgaacagttattcactaccagcttccccattcagcagaagtttacgttcacagaagtggtagaactgctagagccactgctgatgggtgtagcattgcactaattgcaccaaatgagacatccaaatttgcttctttgtgcaaatcattttctaaggtaagttttcaacgatttcctttggagaactcatacttcccagaggttatgagacgattatctcttgcgcgccaaatagacaagattctgcggaaggattcccaggtattcaatcaatttagaatattagagtgcaatgctagtggtgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

967

Amino Acids

107.92

Weight (kDa)

6.92

Isoelectric Point (pI)

52.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16840 AT3G16840
fragaria_vesca	FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910 FvH4_1g29910
malus_domestica	MD12G1094500.v1.1 MD14G1084300.v1.1
prunus_persica	Prupe.5G037600_v2.0.a1 Prupe.5G037600_v2.0.a1 Prupe.5G037600_v2.0.a1 Prupe.5G037600_v2.0.a1
pyrus_communis	pycom14g07400
rosa_chinensis	RchiOBHm_Chr3g0492441
rosa_laevigata	RLG00000022766
rosa_multiflora	Rmu_sc0003156.1_g000008 Rmu_sc0007709.1_g000003 Rmu_sc0017916.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392260
rosa_rugosa	Rorug03G0253900
rosa_samantha	Rh3AG304100 Rh3BG340000 Rh3CG337200 Rh3DG339200
rosa_wichuraiana	Rw3G026810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	2450
AccII	CGCG	1 cut(s)	2821
AccIII	TCCGGA	2 cut(s)	2066, 2163
AciI	CCGC	8 cut(s)	193, 287, 304, 315, 845, 1370, 1589, 2842
AclI	AACGTT	1 cut(s)	1610
AclWI	GGATC	4 cut(s)	562, 575, 677, 1606
AcoI	YGGCCR	4 cut(s)	642, 1371, 1527, 1999
AcuI	CTGAAG	2 cut(s)	1748, 2195
AcvI	CACGTG	1 cut(s)	857
AcyI	GRCGYC	1 cut(s)	698
AfaI	GTAC	5 cut(s)	596, 652, 781, 2061, 2410
AfiI	CCNNNNNNNGG	4 cut(s)	264, 647, 1826, 2527
AflII	CTTAAG	1 cut(s)	1781
AgeI	ACCGGT	1 cut(s)	647
AjnI	CCWGG	8 cut(s)	608, 665, 711, 769, 1894, 2577, 2587, 2853
AleI	CACNNNNGTG	1 cut(s)	2649
AloI	GAACNNNNNNTCC	2 cut(s)	436, 468
Alw21I	GWGCWC	4 cut(s)	21, 253, 491, 2503
Alw26I	GTCTC	9 cut(s)	160, 737, 1465, 1774, 1849, 2110, 2253, 2705, 2797
AlwI	GGATC	4 cut(s)	562, 575, 677, 1606
AlwNI	CAGNNNCTG	1 cut(s)	1601
Ama87I	CYCGRG	1 cut(s)	167
Aor13HI	TCCGGA	2 cut(s)	2066, 2163
AoxI	GGCC	9 cut(s)	642, 663, 687, 1000, 1371, 1527, 1728, 1999, 2575
ApaI	GGGCCC	1 cut(s)	1732
ApeKI	GCWGC	5 cut(s)	1553, 1556, 1586, 2420, 2567
AsiGI	ACCGGT	1 cut(s)	647
Asp700I	GAANNNNTTC	1 cut(s)	431
AspLEI	GCGC	6 cut(s)	326, 339, 352, 2451, 2821, 2823
AspS9I	GGNCC	2 cut(s)	1728, 1729
AsuC2I	CCSGG	2 cut(s)	168, 169
AsuHPI	GGTGA	3 cut(s)	759, 1193, 2230
AsuII	TTCGAA	1 cut(s)	2596
AvaI	CYCGRG	1 cut(s)	167
BaeGI	GKGCMC	1 cut(s)	1732
BamHI	GGATCC	1 cut(s)	567
BanII	GRGCYC	4 cut(s)	21, 491, 1732, 2503
BauI	CACGAG	1 cut(s)	281
BbrPI	CACGTG	1 cut(s)	857
BbsI	GAAGAC	2 cut(s)	105, 2349
Bbv12I	GWGCWC	4 cut(s)	21, 253, 491, 2503
BbvI	GCAGC	5 cut(s)	1540, 1543, 1573, 2432, 2579
BccI	CCATC	8 cut(s)	473, 598, 667, 1316, 1538, 2207, 2279, 2672
BceAI	ACGGC	4 cut(s)	762, 1542, 2014, 2042
BciT130I	CCWGG	8 cut(s)	610, 667, 713, 771, 1896, 2579, 2589, 2855
BclI	TGATCA	1 cut(s)	1774
BcnI	CCSGG	2 cut(s)	168, 169
BcoDI	GTCTC	9 cut(s)	160, 737, 1465, 1774, 1849, 2110, 2253, 2705, 2797
BfaI	CTAG	8 cut(s)	291, 300, 320, 719, 1070, 1937, 2664, 2892
BfmI	CTRYAG	2 cut(s)	1821, 2226
BfoI	RGCGCY	3 cut(s)	327, 340, 353
BfrI	CTTAAG	1 cut(s)	1781
BglI	GCCNNNNNGGC	1 cut(s)	695
BisI	GCNGC	7 cut(s)	287, 1371, 1554, 1557, 1587, 2421, 2568
BlsI	GCNGC	7 cut(s)	288, 1372, 1555, 1558, 1588, 2422, 2569
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	2 cut(s)	1728, 1729
BmiI	GGNNCC	7 cut(s)	6, 569, 938, 1260, 1730, 1818, 1891
BmsI	GCATC	8 cut(s)	420, 964, 1138, 1942, 2341, 2460, 2478, 2500
BpiI	GAAGAC	2 cut(s)	105, 2349
BplI	GAGNNNNNCTC	2 cut(s)	769, 801
BpmI	CTGGAG	4 cut(s)	792, 932, 1274, 1941
Bpu14I	TTCGAA	1 cut(s)	2596
BpuEI	CTTGAG	1 cut(s)	70
BpuMI	CCSGG	2 cut(s)	168, 169
Bsa29I	ATCGAT	1 cut(s)	1496
BsaAI	YACGTR	1 cut(s)	857
BsaHI	GRCGYC	1 cut(s)	698
BsaI	GGTCTC	1 cut(s)	1774
BsaJI	CCNNGG	8 cut(s)	167, 711, 932, 1374, 1894, 1895, 2455, 2853
BsaWI	WCCGGW	3 cut(s)	647, 2066, 2163
BsaXI	ACNNNNNCTCC	2 cut(s)	971, 1001
Bsc4I	CCNNNNNNNGG	4 cut(s)	264, 647, 1826, 2527
Bse118I	RCCGGY	2 cut(s)	647, 694
Bse1I	ACTGG	1 cut(s)	149
Bse3DI	GCAATG	3 cut(s)	2415, 2688, 2893
BseAI	TCCGGA	2 cut(s)	2066, 2163
BseBI	CCWGG	8 cut(s)	610, 667, 713, 771, 1896, 2579, 2589, 2855
BseCI	ATCGAT	1 cut(s)	1496
BseDI	CCNNGG	8 cut(s)	167, 711, 932, 1374, 1894, 1895, 2455, 2853
BseLI	CCNNNNNNNGG	4 cut(s)	264, 647, 1826, 2527
BseMI	GCAATG	3 cut(s)	2415, 2688, 2893
BseMII	CTCAG	6 cut(s)	42, 483, 1277, 1866, 2232, 2498
BseNI	ACTGG	1 cut(s)	149
BsePI	GCGCGC	1 cut(s)	2819
BseRI	GAGGAG	5 cut(s)	259, 533, 934, 1184, 1938
BseSI	GKGCMC	1 cut(s)	1732
BseX3I	CGGCCG	1 cut(s)	1371
BseXI	GCAGC	5 cut(s)	1540, 1543, 1573, 2432, 2579
BseYI	CCCAGC	4 cut(s)	326, 332, 339, 345
BsgI	GTGCAG	1 cut(s)	1050
Bsh1236I	CGCG	1 cut(s)	2821
Bsh1285I	CGRYCG	2 cut(s)	197, 1374
BshFI	GGCC	9 cut(s)	644, 665, 689, 1002, 1373, 1529, 1730, 2001, 2577
BshTI	ACCGGT	1 cut(s)	647
BshVI	ATCGAT	1 cut(s)	1496
BsiEI	CGRYCG	2 cut(s)	197, 1374
BsiHKAI	GWGCWC	4 cut(s)	21, 253, 491, 2503
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	8 cut(s)	168, 641, 648, 686, 695, 813, 2067, 2164
BslFI	GGGAC	2 cut(s)	193, 935
BslI	CCNNNNNNNGG	4 cut(s)	264, 647, 1826, 2527
BsmAI	GTCTC	9 cut(s)	160, 737, 1465, 1774, 1849, 2110, 2253, 2705, 2797
BsmBI	CGTCTC	2 cut(s)	737, 2797
BsmFI	GGGAC	2 cut(s)	193, 935
BsmI	GAATGC	2 cut(s)	1948, 2336
BsnI	GGCC	9 cut(s)	644, 665, 689, 1002, 1373, 1529, 1730, 2001, 2577
Bso31I	GGTCTC	1 cut(s)	1774
BsoBI	CYCGRG	1 cut(s)	167
Bsp119I	TTCGAA	1 cut(s)	2596
Bsp120I	GGGCCC	1 cut(s)	1728
Bsp1286I	GDGCHC	5 cut(s)	21, 253, 491, 1732, 2503
Bsp13I	TCCGGA	2 cut(s)	2066, 2163
Bsp1407I	TGTACA	1 cut(s)	2408
Bsp143I	GATC	9 cut(s)	567, 627, 682, 1493, 1598, 1774, 1865, 1981, 2278
Bsp19I	CCATGG	1 cut(s)	932
BspACI	CCGC	8 cut(s)	193, 287, 304, 315, 845, 1370, 1589, 2842
BspANI	GGCC	9 cut(s)	644, 665, 689, 1002, 1373, 1529, 1730, 2001, 2577
BspCNI	CTCAG	6 cut(s)	41, 484, 1276, 1867, 2233, 2497
BspDI	ATCGAT	1 cut(s)	1496
BspEI	TCCGGA	2 cut(s)	2066, 2163
BspFNI	CGCG	1 cut(s)	2821
BspLI	GGNNCC	7 cut(s)	6, 569, 938, 1260, 1730, 1818, 1891
BspPI	GGATC	4 cut(s)	562, 575, 677, 1606
BspQI	GCTCTTC	4 cut(s)	422, 470, 518, 1422
BspT104I	TTCGAA	1 cut(s)	2596
BspTI	CTTAAG	1 cut(s)	1781
BspTNI	GGTCTC	1 cut(s)	1774
BsrDI	GCAATG	3 cut(s)	2415, 2688, 2893
BsrFI	RCCGGY	2 cut(s)	647, 694
BsrGI	TGTACA	1 cut(s)	2408
BsrI	ACTGG	1 cut(s)	149
BssAI	RCCGGY	2 cut(s)	647, 694
BssECI	CCNNGG	8 cut(s)	167, 711, 932, 1374, 1894, 1895, 2455, 2853
BssHII	GCGCGC	1 cut(s)	2819
BssMI	GATC	9 cut(s)	567, 627, 682, 1493, 1598, 1774, 1865, 1981, 2278
BssNI	GRCGYC	1 cut(s)	698
BssSI	CACGAG	1 cut(s)	281
BssT1I	CCWWGG	2 cut(s)	932, 2455
Bst2BI	CACGAG	1 cut(s)	281
Bst2UI	CCWGG	8 cut(s)	610, 667, 713, 771, 1896, 2579, 2589, 2855
Bst4CI	ACNGT	7 cut(s)	65, 154, 297, 738, 1280, 2522, 2602
Bst6I	CTCTTC	9 cut(s)	422, 470, 518, 1023, 1179, 1302, 1422, 2108, 2310
BstACI	GRCGYC	1 cut(s)	698
BstAFI	CTTAAG	1 cut(s)	1781
BstAPI	GCANNNNNTGC	2 cut(s)	2153, 2699
BstAUI	TGTACA	1 cut(s)	2408
BstBAI	YACGTR	1 cut(s)	857
BstBI	TTCGAA	1 cut(s)	2596
BstC8I	GCNNGC	7 cut(s)	174, 178, 696, 724, 2247, 2499, 2821
BstDSI	CCRYGG	1 cut(s)	932
BstFNI	CGCG	1 cut(s)	2821
BstH2I	RGCGCY	3 cut(s)	327, 340, 353
BstHHI	GCGC	6 cut(s)	326, 339, 352, 2451, 2821, 2823
BstKTI	GATC	9 cut(s)	570, 630, 685, 1496, 1601, 1777, 1868, 1984, 2281
BstMAI	GTCTC	9 cut(s)	160, 737, 1465, 1774, 1849, 2110, 2253, 2705, 2797
BstMBI	GATC	9 cut(s)	567, 627, 682, 1493, 1598, 1774, 1865, 1981, 2278
BstMCI	CGRYCG	2 cut(s)	197, 1374
BstNI	CCWGG	8 cut(s)	610, 667, 713, 771, 1896, 2579, 2589, 2855
BstNSI	RCATGY	2 cut(s)	1837, 2035
BstSFI	CTRYAG	2 cut(s)	1821, 2226
BstSLI	GKGCMC	1 cut(s)	1732
BstUI	CGCG	1 cut(s)	2821
BstV1I	GCAGC	5 cut(s)	1540, 1543, 1573, 2432, 2579
BstV2I	GAAGAC	2 cut(s)	105, 2349
BstX2I	RGATCY	2 cut(s)	567, 1598
BstXI	CCANNNNNNTGG	3 cut(s)	609, 666, 998
BstYI	RGATCY	2 cut(s)	567, 1598
BstZI	CGGCCG	1 cut(s)	1371
Bsu15I	ATCGAT	1 cut(s)	1496
BsuRI	GGCC	9 cut(s)	644, 665, 689, 1002, 1373, 1529, 1730, 2001, 2577
BsuTUI	ATCGAT	1 cut(s)	1496
BtgI	CCRYGG	1 cut(s)	932
BtgZI	GCGATG	1 cut(s)	2424
BtsI	GCAGTG	2 cut(s)	1303, 2670
BtsIMutI	CAGTG	4 cut(s)	38, 1285, 1303, 2670
Cac8I	GCNNGC	7 cut(s)	174, 178, 696, 724, 2247, 2499, 2821
CaiI	CAGNNNCTG	1 cut(s)	1601
CfoI	GCGC	6 cut(s)	326, 339, 352, 2451, 2821, 2823
Cfr10I	RCCGGY	2 cut(s)	647, 694
Cfr13I	GGNCC	2 cut(s)	1728, 1729
Cfr9I	CCCGGG	1 cut(s)	167
ClaI	ATCGAT	1 cut(s)	1496
CseI	GACGC	1 cut(s)	687
Csp6I	GTAC	5 cut(s)	595, 651, 780, 2060, 2409
CspAI	ACCGGT	1 cut(s)	647
CspCI	CAANNNNNGTGG	1 cut(s)	2875
CviQI	GTAC	5 cut(s)	595, 651, 780, 2060, 2409
DpnI	GATC	9 cut(s)	569, 629, 684, 1495, 1600, 1776, 1867, 1983, 2280
DpnII	GATC	9 cut(s)	567, 627, 682, 1493, 1598, 1774, 1865, 1981, 2278
EaeI	YGGCCR	4 cut(s)	642, 1371, 1527, 1999
EagI	CGGCCG	1 cut(s)	1371
Eam1104I	CTCTTC	9 cut(s)	422, 470, 518, 1023, 1179, 1302, 1422, 2108, 2310
EarI	CTCTTC	9 cut(s)	422, 470, 518, 1023, 1179, 1302, 1422, 2108, 2310
EciI	GGCGGA	1 cut(s)	319
Ecl136II	GAGCTC	3 cut(s)	19, 489, 2501
EclXI	CGGCCG	1 cut(s)	1371
Eco130I	CCWWGG	2 cut(s)	932, 2455
Eco147I	AGGCCT	1 cut(s)	2577
Eco24I	GRGCYC	4 cut(s)	21, 491, 1732, 2503
Eco31I	GGTCTC	1 cut(s)	1774
Eco32I	GATATC	1 cut(s)	1159
Eco52I	CGGCCG	1 cut(s)	1371
Eco53kI	GAGCTC	3 cut(s)	19, 489, 2501
Eco57I	CTGAAG	2 cut(s)	1748, 2195
Eco72I	CACGTG	1 cut(s)	857
Eco88I	CYCGRG	1 cut(s)	167
EcoICRI	GAGCTC	3 cut(s)	19, 489, 2501
EcoO109I	RGGNCCY	1 cut(s)	1729
EcoRI	GAATTC	2 cut(s)	670, 2221
EcoRII	CCWGG	8 cut(s)	608, 665, 711, 769, 1894, 2577, 2587, 2853
EcoRV	GATATC	1 cut(s)	1159
EcoT14I	CCWWGG	2 cut(s)	932, 2455
EcoT22I	ATGCAT	2 cut(s)	1459, 2493
EcoT38I	GRGCYC	4 cut(s)	21, 491, 1732, 2503
ErhI	CCWWGG	2 cut(s)	932, 2455
Esp3I	CGTCTC	2 cut(s)	737, 2797
FalI	AAGNNNNNCTT	4 cut(s)	416, 448, 419, 451
FaqI	GGGAC	2 cut(s)	193, 935
FbaI	TGATCA	1 cut(s)	1774
Fnu4HI	GCNGC	7 cut(s)	287, 1371, 1554, 1557, 1587, 2421, 2568
FriOI	GRGCYC	4 cut(s)	21, 491, 1732, 2503
Fsp4HI	GCNGC	7 cut(s)	287, 1371, 1554, 1557, 1587, 2421, 2568
FspBI	CTAG	8 cut(s)	291, 300, 320, 719, 1070, 1937, 2664, 2892
FspI	TGCGCA	1 cut(s)	2450
GlaI	GCGC	6 cut(s)	325, 338, 351, 2450, 2820, 2822
GluI	GCNGC	7 cut(s)	287, 1371, 1554, 1557, 1587, 2421, 2568
GsaI	CCCAGC	4 cut(s)	330, 336, 343, 349
GsuI	CTGGAG	4 cut(s)	792, 932, 1274, 1941
HaeII	RGCGCY	3 cut(s)	327, 340, 353
HaeIII	GGCC	9 cut(s)	644, 665, 689, 1002, 1373, 1529, 1730, 2001, 2577
HapII	CCGG	8 cut(s)	168, 641, 648, 686, 695, 813, 2067, 2164
HgaI	GACGC	1 cut(s)	687
HhaI	GCGC	6 cut(s)	326, 339, 352, 2451, 2821, 2823
Hin1I	GRCGYC	1 cut(s)	698
Hin6I	GCGC	6 cut(s)	324, 337, 350, 2449, 2819, 2821
HinP1I	GCGC	6 cut(s)	324, 337, 350, 2449, 2819, 2821
HincII	GTYRAC	2 cut(s)	150, 1839
HindII	GTYRAC	2 cut(s)	150, 1839
HindIII	AAGCTT	1 cut(s)	1539
HinfI	GANTC	9 cut(s)	269, 356, 784, 923, 1397, 2081, 2318, 2836, 2849
HpaII	CCGG	8 cut(s)	168, 641, 648, 686, 695, 813, 2067, 2164
HphI	GGTGA	3 cut(s)	759, 1193, 2230
Hpy166II	GTNNAC	7 cut(s)	150, 240, 1839, 2537, 2546, 2638, 2644
Hpy8I	GTNNAC	7 cut(s)	150, 240, 1839, 2537, 2546, 2638, 2644
Hpy99I	CGWCG	4 cut(s)	202, 379, 703, 868
HpyCH4III	ACNGT	7 cut(s)	65, 154, 297, 738, 1280, 2522, 2602
HpyCH4IV	ACGT	4 cut(s)	856, 1610, 2207, 2640
HpySE526I	ACGT	4 cut(s)	856, 1610, 2207, 2640
Hsp92I	GRCGYC	1 cut(s)	698
HspAI	GCGC	6 cut(s)	324, 337, 350, 2449, 2819, 2821
Kpn2I	TCCGGA	2 cut(s)	2066, 2163
KroI	GCCGGC	1 cut(s)	694
KroNI	GCCGGC	1 cut(s)	696
Ksp22I	TGATCA	1 cut(s)	1774
Kzo9I	GATC	9 cut(s)	567, 627, 682, 1493, 1598, 1774, 1865, 1981, 2278
LguI	GCTCTTC	4 cut(s)	422, 470, 518, 1422
LmnI	GCTCC	6 cut(s)	10, 611, 661, 773, 860, 913
Lsp1109I	GCAGC	5 cut(s)	1540, 1543, 1573, 2432, 2579
LweI	GCATC	8 cut(s)	420, 964, 1138, 1942, 2341, 2460, 2478, 2500
MaeI	CTAG	8 cut(s)	291, 300, 320, 719, 1070, 1937, 2664, 2892
MaeII	ACGT	4 cut(s)	856, 1610, 2207, 2640
MaeIII	GTNAC	3 cut(s)	852, 1705, 2086
MalI	GATC	9 cut(s)	569, 629, 684, 1495, 1600, 1776, 1867, 1983, 2280
MboI	GATC	9 cut(s)	567, 627, 682, 1493, 1598, 1774, 1865, 1981, 2278
MfeI	CAATTG	1 cut(s)	2514
MflI	RGATCY	2 cut(s)	567, 1598
MhlI	GDGCHC	5 cut(s)	21, 253, 491, 1732, 2503
MlyI	GAGTC	2 cut(s)	778, 2327
MmeI	TCCRAC	3 cut(s)	1626, 1807, 1867
Mph1103I	ATGCAT	2 cut(s)	1459, 2493
MreI	CGCCGGCG	1 cut(s)	694
MroI	TCCGGA	2 cut(s)	2066, 2163
MroNI	GCCGGC	1 cut(s)	694
MroXI	GAANNNNTTC	1 cut(s)	431
MseI	TTAA	2 cut(s)	1782, 2372
MslI	CAYNNNNRTG	5 cut(s)	188, 619, 996, 2007, 2649
MspA1I	CMGCKG	1 cut(s)	1406
MspCI	CTTAAG	1 cut(s)	1781
MspI	CCGG	8 cut(s)	168, 641, 648, 686, 695, 813, 2067, 2164
MunI	CAATTG	1 cut(s)	2514
Mva1269I	GAATGC	2 cut(s)	1948, 2336
MvaI	CCWGG	8 cut(s)	610, 667, 713, 771, 1896, 2579, 2589, 2855
MvnI	CGCG	1 cut(s)	2821
NaeI	GCCGGC	1 cut(s)	696
NciI	CCSGG	2 cut(s)	168, 169
NcoI	CCATGG	1 cut(s)	932
NdeII	GATC	9 cut(s)	567, 627, 682, 1493, 1598, 1774, 1865, 1981, 2278
NgoMIV	GCCGGC	1 cut(s)	694
NlaIV	GGNNCC	7 cut(s)	6, 569, 938, 1260, 1730, 1818, 1891
NmeAIII	GCCGAG	1 cut(s)	1399
NmuCI	GTSAC	2 cut(s)	852, 1705
NsbI	TGCGCA	1 cut(s)	2450
NsiI	ATGCAT	2 cut(s)	1459, 2493
NspI	RCATGY	2 cut(s)	1837, 2035
NspV	TTCGAA	1 cut(s)	2596
OliI	CACNNNNGTG	1 cut(s)	2649
PasI	CCCWGGG	1 cut(s)	1895
PauI	GCGCGC	1 cut(s)	2819
PceI	AGGCCT	1 cut(s)	2577
PciSI	GCTCTTC	4 cut(s)	422, 470, 518, 1422
PcsI	WCGNNNNNNNCGW	2 cut(s)	698, 872
PctI	GAATGC	2 cut(s)	1948, 2336
PdiI	GCCGGC	1 cut(s)	696
PdmI	GAANNNNTTC	1 cut(s)	431
PfeI	GAWTC	7 cut(s)	269, 356, 923, 1397, 2081, 2836, 2849
PinAI	ACCGGT	1 cut(s)	647
PkrI	GCNGC	7 cut(s)	288, 1372, 1555, 1558, 1588, 2422, 2569
PleI	GAGTC	2 cut(s)	778, 2326
PmaCI	CACGTG	1 cut(s)	857
PmlI	CACGTG	1 cut(s)	857
PpsI	GAGTC	2 cut(s)	778, 2326
Ppu21I	YACGTR	1 cut(s)	857
Psp124BI	GAGCTC	3 cut(s)	21, 491, 2503
Psp1406I	AACGTT	1 cut(s)	1610
Psp6I	CCWGG	8 cut(s)	608, 665, 711, 769, 1894, 2577, 2587, 2853
PspCI	CACGTG	1 cut(s)	857
PspFI	CCCAGC	4 cut(s)	326, 332, 339, 345
PspGI	CCWGG	8 cut(s)	608, 665, 711, 769, 1894, 2577, 2587, 2853
PspN4I	GGNNCC	7 cut(s)	6, 569, 938, 1260, 1730, 1818, 1891
PspOMI	GGGCCC	1 cut(s)	1728
PspPI	GGNCC	2 cut(s)	1728, 1729
PstNI	CAGNNNCTG	1 cut(s)	1601
PsuI	RGATCY	2 cut(s)	567, 1598
PteI	GCGCGC	1 cut(s)	2819
PvuII	CAGCTG	1 cut(s)	1406
RsaI	GTAC	5 cut(s)	596, 652, 781, 2061, 2410
RsaNI	GTAC	5 cut(s)	595, 651, 780, 2060, 2409
RseI	CAYNNNNRTG	5 cut(s)	188, 619, 996, 2007, 2649
SacI	GAGCTC	3 cut(s)	21, 491, 2503
SapI	GCTCTTC	4 cut(s)	422, 470, 518, 1422
SaqAI	TTAA	2 cut(s)	1782, 2372
SatI	GCNGC	7 cut(s)	287, 1371, 1554, 1557, 1587, 2421, 2568
Sau3AI	GATC	9 cut(s)	567, 627, 682, 1493, 1598, 1774, 1865, 1981, 2278
Sau96I	GGNCC	2 cut(s)	1728, 1729
SchI	GAGTC	2 cut(s)	778, 2327
SduI	GDGCHC	5 cut(s)	21, 253, 491, 1732, 2503
SfaNI	GCATC	8 cut(s)	420, 964, 1138, 1942, 2341, 2460, 2478, 2500
SfcI	CTRYAG	2 cut(s)	1821, 2226
SfuI	TTCGAA	1 cut(s)	2596
SgrAI	CRCCGGYG	1 cut(s)	694
SmaI	CCCGGG	1 cut(s)	169
SmiMI	CAYNNNNRTG	5 cut(s)	188, 619, 996, 2007, 2649
SmlI	CTYRAG	2 cut(s)	49, 1781
SmoI	CTYRAG	2 cut(s)	49, 1781
SrfI	GCCCGGGC	1 cut(s)	169
SseBI	AGGCCT	1 cut(s)	2577
SsiI	CCGC	8 cut(s)	193, 287, 304, 315, 845, 1370, 1589, 2842
SspI	AATATT	1 cut(s)	2877
SspMI	CTAG	8 cut(s)	291, 300, 320, 719, 1070, 1937, 2664, 2892
SstI	GAGCTC	3 cut(s)	21, 491, 2503
StuI	AGGCCT	1 cut(s)	2577
StyI	CCWWGG	2 cut(s)	932, 2455
TaaI	ACNGT	7 cut(s)	65, 154, 297, 738, 1280, 2522, 2602
TaiI	ACGT	4 cut(s)	859, 1613, 2210, 2643
TatI	WGTACW	1 cut(s)	2408
TauI	GCSGC	2 cut(s)	289, 1373
TfiI	GAWTC	7 cut(s)	269, 356, 923, 1397, 2081, 2836, 2849
Tru1I	TTAA	2 cut(s)	1782, 2372
Tru9I	TTAA	2 cut(s)	1782, 2372
TscAI	CASTG	4 cut(s)	45, 1285, 1303, 2677
TseFI	GTSAC	2 cut(s)	852, 1705
TseI	GCWGC	5 cut(s)	1553, 1556, 1586, 2420, 2567
Tsp45I	GTSAC	2 cut(s)	852, 1705
TspGWI	ACGGA	1 cut(s)	1856
TspMI	CCCGGG	1 cut(s)	167
TspRI	CASTG	4 cut(s)	45, 1285, 1303, 2677
Vha464I	CTTAAG	1 cut(s)	1781
XceI	RCATGY	2 cut(s)	1837, 2035
XcmI	CCANNNNNNNNNTGG	2 cut(s)	261, 1902
XmaI	CCCGGG	1 cut(s)	167
XmnI	GAANNNNTTC	1 cut(s)	431
XspI	CTAG	8 cut(s)	291, 300, 320, 719, 1070, 1937, 2664, 2892
Zsp2I	ATGCAT	2 cut(s)	1459, 2493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.