AT3G17090

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008465
Physical Location & Seq
Forward (+)
5826586 .. 5829900
3315 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17090.2

Sequence Viewer

Length: 1155 bp
ATGTCAGGTTCATTGATGAATCTGTTTTCTCTCTGCTTCAAGCCATTCGGGCACGTCTGTGATAATTCCGAAGCTGGATCGGGTGGTGGTGGTGGCGTTTCTGGTGGAACCGGCGGTGAAGGCAAAGACGGATTGCTTTGGTTCCGTGATCTCGGTAAATATTGCGGCGGAGATTTCTCCATGGCTGTGATTCAAGCCAATCAGGTTCTTGAAGATCAGAGCCAGGTCGAATCCGGTAATTTTGGGACTTTTGTTGGTGTTTACGATGGTCATGGTGGTCCTGAAGCTGCTCGTTATGTCTGTGATCATCTCTTTAACCATTTTCGAGAAATATCAGCGGAAACACAAGGAGTTGTGACGAGAGAGACGATAGAAAGAGCCTTTCATGCGACAGAAGAAGGATTCGCTTCCATTGTGTCAGAGCTGTGGCAAGAAATACCAAATTTGGCAACTGTTGGCACTTGTTGTTTGGTTGGAGTGATATATCAAAATACTCTTTTTGTGGCAAGTCTTGGAGATTCACGGGTTGTTCTTGGAAAGAAAGGCAACTGTGGCGGACTCTCTGCTATTCAGCTGTCGACTGAACACAATGCTAACAATGAAGATATTCGTTGGGAACTCAAGGACTTACATCCTGATGACCCGCAGATCGTTGTGTTCAGGCATGGAGTTTGGAGAGTTAAGGGCATCATTCAGGTATCGAGGTCTATAGGAGACATGTACATGAAACGGCCCGAATTTAACAAGGAGCCAATCAGTCAAAAGTTCAGAATTGCAGAGCCAATGAAAAGACCCTTGATGTCTGCAACACCAACAATACTCTCTCATCCTCTGCACCCTAATGATTCGTTTCTCATTTTTGCATCTGATGGTCTTTGGGAGCATTTGACTAACGAAAAAGCAGTTGAGATTGTTCATAACCATCCCCGTGCTGGAAGCGCAAAGAGACTGATAAAGGCGGCTCTTCACGAGGCAGCGAGGAAACGTGAGATGAGATATTCAGATCTAAGGAAGATTGACAAGAAAGTGAGACGACATTTTCATGATGACATCACGGTTATAGTGGTGTTCTTGAACCATGACCTCATATCGAGAGGCCACATCAACTCAACCCAAGACACAACAGTCTCTATACGGAGTGCTCTTGAACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

384

Amino Acids

42.49

Weight (kDa)

6.44

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 83 - 308 1.5e-35 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1124
AccI GTMKAC 1 cut(s) 578
AciI CCGC 7 cut(s) 114, 165, 168, 338, 555, 644, 959
AclWI GGATC 1 cut(s) 85
AcsI RAATTY 2 cut(s) 442, 737
AcuI CTGAAG 1 cut(s) 303
AfaI GTAC 1 cut(s) 722
AfiI CCNNNNNNNGG 1 cut(s) 932
AflIII ACRYGT 1 cut(s) 717
AgsI TTSAA 5 cut(s) 40, 194, 212, 1075, 1148
AjiI CACGTC 1 cut(s) 55
AjnI CCWGG 1 cut(s) 222
AleI CACNNNNGTG 1 cut(s) 57
AluBI AGCT 4 cut(s) 74, 287, 424, 574
AluI AGCT 4 cut(s) 74, 287, 424, 574
Alw21I GWGCWC 1 cut(s) 1144
Alw26I GTCTC 5 cut(s) 359, 708, 940, 1024, 1132
AlwI GGATC 1 cut(s) 85
AoxI GGCC 2 cut(s) 731, 1096
ApeKI GCWGC 2 cut(s) 287, 974
ApoI RAATTY 2 cut(s) 442, 737
Asp700I GAANNNNTTC 1 cut(s) 606
AspLEI GCGC 1 cut(s) 941
AspS9I GGNCC 2 cut(s) 278, 732
AsuHPI GGTGA 1 cut(s) 128
AvaII GGWCC 1 cut(s) 278
BaeGI GKGCMC 1 cut(s) 54
BauI CACGAG 1 cut(s) 968
Bbv12I GWGCWC 1 cut(s) 1144
BbvI GCAGC 2 cut(s) 274, 986
BccI CCATC 3 cut(s) 260, 863, 930
BceAI ACGGC 1 cut(s) 746
BciT130I CCWGG 1 cut(s) 224
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 5 cut(s) 359, 708, 940, 1024, 1132
BfmI CTRYAG 1 cut(s) 708
BglI GCCNNNNNGGC 1 cut(s) 49
BglII AGATCT 1 cut(s) 1003
BisI GCNGC 4 cut(s) 166, 288, 960, 975
BlsI GCNGC 4 cut(s) 167, 289, 961, 976
Bme1390I CCNGG 1 cut(s) 224
Bme18I GGWCC 1 cut(s) 278
BmgBI CACGTC 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 278, 732
BmiI GGNNCC 3 cut(s) 109, 143, 750
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 2 cut(s) 696, 872
BpuEI CTTGAG 1 cut(s) 605
BsaJI CCNNGG 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 932
Bse118I RCCGGY 1 cut(s) 110
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 3 cut(s) 631, 826, 922
BseLI CCNNNNNNNGG 1 cut(s) 932
BseSI GKGCMC 1 cut(s) 54
BseXI GCAGC 2 cut(s) 274, 986
BsgI GTGCAG 1 cut(s) 818
BshFI GGCC 2 cut(s) 733, 1098
BsiHKAI GWGCWC 1 cut(s) 1144
BsiSI CCGG 2 cut(s) 111, 234
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 1 cut(s) 932
BsmAI GTCTC 5 cut(s) 359, 708, 940, 1024, 1132
BsmBI CGTCTC 2 cut(s) 359, 1024
BsmFI GGGAC 1 cut(s) 259
BsnI GGCC 2 cut(s) 733, 1098
Bsp1286I GDGCHC 2 cut(s) 54, 1144
Bsp1407I TGTACA 1 cut(s) 720
Bsp143I GATC 6 cut(s) 77, 148, 214, 304, 648, 1003
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 7 cut(s) 114, 165, 168, 338, 555, 644, 959
BspANI GGCC 2 cut(s) 733, 1098
BspHI TCATGA 1 cut(s) 1042
BspLI GGNNCC 3 cut(s) 109, 143, 750
BspPI GGATC 1 cut(s) 85
BspQI GCTCTTC 1 cut(s) 969
BsrFI RCCGGY 1 cut(s) 110
BsrGI TGTACA 1 cut(s) 720
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 6 cut(s) 77, 148, 214, 304, 648, 1003
BssSI CACGAG 1 cut(s) 968
BssT1I CCWWGG 1 cut(s) 180
Bst2BI CACGAG 1 cut(s) 968
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 4 cut(s) 454, 551, 1057, 1126
Bst6I CTCTTC 1 cut(s) 969
BstAUI TGTACA 1 cut(s) 720
BstDEI CTNAG 1 cut(s) 1007
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 3 cut(s) 631, 826, 922
BstHHI GCGC 1 cut(s) 941
BstKTI GATC 6 cut(s) 80, 151, 217, 307, 651, 1006
BstMAI GTCTC 5 cut(s) 359, 708, 940, 1024, 1132
BstMBI GATC 6 cut(s) 77, 148, 214, 304, 648, 1003
BstMWI GCNNNNNNNGC 5 cut(s) 49, 120, 386, 552, 938
BstNI CCWGG 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 721
BstSCI CCNGG 1 cut(s) 222
BstSFI CTRYAG 1 cut(s) 708
BstSLI GKGCMC 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 274, 986
BstX2I RGATCY 1 cut(s) 1003
BstYI RGATCY 1 cut(s) 1003
BsuRI GGCC 2 cut(s) 733, 1098
BtgI CCRYGG 1 cut(s) 180
BtrI CACGTC 1 cut(s) 55
BtsCI GGATG 3 cut(s) 631, 826, 922
BtsIMutI CAGTG 1 cut(s) 1150
CciI TCATGA 1 cut(s) 1042
CfoI GCGC 1 cut(s) 941
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 2 cut(s) 278, 732
Csp6I GTAC 1 cut(s) 721
CviAII CATG 8 cut(s) 181, 272, 386, 665, 718, 724, 1043, 1079
CviQI GTAC 1 cut(s) 721
DdeI CTNAG 1 cut(s) 1007
DpnI GATC 6 cut(s) 79, 150, 216, 306, 650, 1005
DpnII GATC 6 cut(s) 77, 148, 214, 304, 648, 1003
DrdI GACNNNNNNGTC 1 cut(s) 1124
DseDI GACNNNNNNGTC 1 cut(s) 1124
Eam1104I CTCTTC 1 cut(s) 969
EarI CTCTTC 1 cut(s) 969
EciI GGCGGA 2 cut(s) 183, 570
Eco130I CCWWGG 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 180
Esp3I CGTCTC 2 cut(s) 359, 1024
FaeI CATG 8 cut(s) 184, 275, 389, 668, 721, 727, 1046, 1082
FaqI GGGAC 1 cut(s) 259
FatI CATG 8 cut(s) 180, 271, 385, 664, 717, 723, 1042, 1078
FauI CCCGC 1 cut(s) 651
FbaI TGATCA 1 cut(s) 304
FblI GTMKAC 1 cut(s) 578
Fnu4HI GCNGC 4 cut(s) 166, 288, 960, 975
FokI GGATG 3 cut(s) 618, 813, 909
Fsp4HI GCNGC 4 cut(s) 166, 288, 960, 975
GlaI GCGC 1 cut(s) 940
GluI GCNGC 4 cut(s) 166, 288, 960, 975
HaeIII GGCC 2 cut(s) 733, 1098
HapII CCGG 2 cut(s) 111, 234
HhaI GCGC 1 cut(s) 941
Hin1II CATG 8 cut(s) 184, 275, 389, 668, 721, 727, 1046, 1082
Hin6I GCGC 1 cut(s) 939
HinP1I GCGC 1 cut(s) 939
HincII GTYRAC 1 cut(s) 579
HindII GTYRAC 1 cut(s) 579
HinfI GANTC 7 cut(s) 19, 190, 230, 402, 518, 558, 845
HpaII CCGG 2 cut(s) 111, 234
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 2 cut(s) 262, 579
Hpy188I TCNGA 6 cut(s) 70, 219, 421, 770, 868, 1003
Hpy188III TCNNGA 9 cut(s) 209, 281, 326, 635, 968, 1043, 1072, 1092, 1145
Hpy8I GTNNAC 2 cut(s) 262, 579
HpyAV CCTTC 2 cut(s) 113, 392
HpyCH4III ACNGT 4 cut(s) 454, 551, 1057, 1126
HpyCH4IV ACGT 2 cut(s) 54, 985
HpyCH4V TGCA 4 cut(s) 776, 806, 835, 863
HpyF10VI GCNNNNNNNGC 5 cut(s) 49, 120, 386, 552, 938
HpyF3I CTNAG 1 cut(s) 1007
HpySE526I ACGT 2 cut(s) 54, 985
Hsp92II CATG 8 cut(s) 184, 275, 389, 668, 721, 727, 1046, 1082
HspAI GCGC 1 cut(s) 939
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 6 cut(s) 77, 148, 214, 304, 648, 1003
LguI GCTCTTC 1 cut(s) 969
LmnI GCTCC 2 cut(s) 748, 880
Lsp1109I GCAGC 2 cut(s) 274, 986
LweI GCATC 2 cut(s) 696, 872
MaeII ACGT 2 cut(s) 54, 985
MaeIII GTNAC 1 cut(s) 355
MalI GATC 6 cut(s) 79, 150, 216, 306, 650, 1005
MboI GATC 6 cut(s) 77, 148, 214, 304, 648, 1003
MboII GAAGA 5 cut(s) 224, 407, 614, 956, 1024
MflI RGATCY 1 cut(s) 1003
MhlI GDGCHC 2 cut(s) 54, 1144
MluCI AATT 5 cut(s) 64, 238, 442, 737, 771
MlyI GAGTC 1 cut(s) 552
MmeI TCCRAC 1 cut(s) 454
MnlI CCTC 6 cut(s) 696, 840, 964, 972, 1088, 1094
MroXI GAANNNNTTC 1 cut(s) 606
MseI TTAA 3 cut(s) 315, 681, 741
MslI CAYNNNNRTG 7 cut(s) 57, 185, 636, 722, 840, 927, 1041
MspA1I CMGCKG 2 cut(s) 338, 574
MspI CCGG 2 cut(s) 111, 234
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
MwoI GCNNNNNNNGC 5 cut(s) 49, 120, 386, 552, 938
NcoI CCATGG 1 cut(s) 180
NdeII GATC 6 cut(s) 77, 148, 214, 304, 648, 1003
NlaIII CATG 8 cut(s) 184, 275, 389, 668, 721, 727, 1046, 1082
NlaIV GGNNCC 3 cut(s) 109, 143, 750
NmuCI GTSAC 1 cut(s) 355
NspI RCATGY 1 cut(s) 721
OliI CACNNNNGTG 1 cut(s) 57
PagI TCATGA 1 cut(s) 1042
PciI ACATGT 1 cut(s) 717
PciSI GCTCTTC 1 cut(s) 969
PcsI WCGNNNNNNNCGW 1 cut(s) 365
PdmI GAANNNNTTC 1 cut(s) 606
PfeI GAWTC 6 cut(s) 19, 190, 230, 402, 518, 845
PkrI GCNGC 4 cut(s) 167, 289, 961, 976
PleI GAGTC 1 cut(s) 552
PpsI GAGTC 1 cut(s) 552
PscI ACATGT 1 cut(s) 717
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 3 cut(s) 109, 143, 750
PspPI GGNCC 2 cut(s) 278, 732
PsuI RGATCY 1 cut(s) 1003
PvuII CAGCTG 1 cut(s) 574
RsaI GTAC 1 cut(s) 722
RsaNI GTAC 1 cut(s) 721
RseI CAYNNNNRTG 7 cut(s) 57, 185, 636, 722, 840, 927, 1041
SalI GTCGAC 1 cut(s) 577
SapI GCTCTTC 1 cut(s) 969
SaqAI TTAA 3 cut(s) 315, 681, 741
SatI GCNGC 4 cut(s) 166, 288, 960, 975
Sau3AI GATC 6 cut(s) 77, 148, 214, 304, 648, 1003
Sau96I GGNCC 2 cut(s) 278, 732
SchI GAGTC 1 cut(s) 552
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 2 cut(s) 54, 1144
SfaNI GCATC 2 cut(s) 696, 872
SfcI CTRYAG 1 cut(s) 708
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 7 cut(s) 57, 185, 636, 722, 840, 927, 1041
SmlI CTYRAG 1 cut(s) 620
SmoI CTYRAG 1 cut(s) 620
Sse9I AATT 5 cut(s) 64, 238, 442, 737, 771
SsiI CCGC 7 cut(s) 114, 165, 168, 338, 555, 644, 959
SspI AATATT 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 222
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 4 cut(s) 454, 551, 1057, 1126
TaiI ACGT 2 cut(s) 57, 988
TaqI TCGA 5 cut(s) 228, 325, 578, 701, 1091
TasI AATT 5 cut(s) 64, 238, 442, 737, 771
TatI WGTACW 1 cut(s) 720
TauI GCSGC 2 cut(s) 168, 962
TfiI GAWTC 6 cut(s) 19, 190, 230, 402, 518, 845
Tru1I TTAA 3 cut(s) 315, 681, 741
Tru9I TTAA 3 cut(s) 315, 681, 741
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 2 cut(s) 287, 974
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 7 cut(s) 32, 374, 615, 740, 800, 905, 1031
TspGWI ACGGA 3 cut(s) 134, 144, 1150
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 2 cut(s) 442, 737
XceI RCATGY 1 cut(s) 721
XcmI CCANNNNNNNNNTGG 1 cut(s) 929
XmiI GTMKAC 1 cut(s) 578
XmnI GAANNNNTTC 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.