Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0008465

Physical Location & Seq

Genomic Coordinates Reverse (-)

15291159 .. 15292304

Gene Structure 1146 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1142900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGAATCTGCTCTCTCTTTGCTGGAGGCCATTTTGGCGCGGCGACGGTGAGGGACTCAGCTCTGTTGGAATCGTCGGCGCTGCGAATAACGGAGACGGCGGAGGAGGGCGAGATGGCAAAGATAACTTGCTTTGGTTCCGAGATTTTGGAAAGTATGCGTGGGGCGATTTCTCTATGGCGGTGGTCCAGGCCAATCAGGTGCTCGAGGATCAGAGCCAGATCGAGTCGGGACCCTTTGGGACCTTCGTCGGCGTATACGACGGACACGGTGGACCAGAGACCGCTCGATACGTTTGCGACAATTTATTCAAACATTTCCAAGCAATATCAGCGGAGTCCAAAGGTGTTGTGACAGCGGAGACCATTCAAAATGCTTTTCTCCGAACGGAGGAAGGGTTTACCGCCCTTGTTTCGAAGCTGTGGGGTACTAGACCCCCAGTAGCAACTGTTGGGTCATGCTGTCTGGTTGGAGTTATATCTCTGGGGACCCTATTTGTGGCAAACCTGGGAGATTCCCGTTGTGTGCATGAACTGAAAGATTTGCACCCACATGATCCTCAAATTGTCGTTTTAAAGCATGGAGTTTGGAGAGTAAAAGGCATTATCCAGGTATCTAAATCTATAGGTGACGCACATATGAAACATGCAAGGTTTAACAGGGAGCCGGTTAGTGCGAAATTCAGACTTCCCGAACCAATGACCATGCCTACCTTGTCTGCCGAACCAACCATTCTTTCTCATCCTCTCCATCCAAATGATTCTTTTCTTATATTTGCTTCTGATGGTCTATGGGAACACTTGAGTAATGAACAAGCTGTTGAAATTGTCCACAATCATCCACATGCGGGAAGCGCCAAGCGGCTTGTTAAGACGGCTCTCCAAGAAGCTGCAAGAAAAAGAGAGATGCGATATTCAGATCTTCAGAAAATTGACAAGAAGGTCCGACGCCATTTTCACGATGATATAACTGTCATTGTTTTATTCTTAAACCGTGACCTATTATCCAGAGGGAGAGTGGAAGAGCCCCCAGTCTCAATAAAAAGTGCTCGTGACCAAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

354

Amino Acids

39.01

Weight (kDa)

7.28

Isoelectric Point (pI)

34.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	81 - 175	1.6e-07	Protein phosphatase 2C
PP2C	PF00481	195 - 298	1.1e-17	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17090 AT3G17090
fragaria_vesca	FvH4_4g19920 FvH4_4g19920
malus_domestica	MD03G1142900.v1.1 MD13G1152100.v1.1 MD16G1152600.v1.1 MD17G1144700.v1.1
prunus_persica	Prupe.1G115800_v2.0.a1 Prupe.1G115800_v2.0.a1
pyrus_communis	pycom13g13000 pycom16g12980
rosa_chinensis	RchiOBHm_Chr4g0425561
rosa_laevigata	RLG00000007354
rosa_multiflora	Rmu_sc0001900.1_g000002
rosa_roxburghii	Rroxscaffold_5G00367530
rosa_rugosa	Rorug04G0204000 Rorug04G0204100
rosa_samantha	Rh4AG261000 Rh4BG266900 Rh4CG278100 Rh4DG263200
rosa_wichuraiana	Rw4G022600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	938
AccBSI	CCGCTC	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	255
AccII	CGCG	1 cut(s)	39
AciI	CCGC	9 cut(s)	39, 99, 179, 282, 332, 356, 402, 845, 859
AclWI	GGATC	2 cut(s)	216, 548
AcsI	RAATTY	1 cut(s)	677
AcuI	CTGAAG	1 cut(s)	905
AcyI	GRCGYC	1 cut(s)	946
AfaI	GTAC	1 cut(s)	427
AfiI	CCNNNNNNNGG	3 cut(s)	388, 496, 845
AgsI	TTSAA	3 cut(s)	310, 368, 821
AjnI	CCWGG	3 cut(s)	186, 504, 606
AjuI	GAANNNNNNNTTGG	2 cut(s)	718, 750
AluBI	AGCT	4 cut(s)	60, 418, 815, 887
AluI	AGCT	4 cut(s)	60, 418, 815, 887
Alw21I	GWGCWC	2 cut(s)	204, 1048
Alw26I	GTCTC	4 cut(s)	87, 272, 353, 1036
AlwI	GGATC	2 cut(s)	216, 548
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	2 cut(s)	26, 189
ApeKI	GCWGC	2 cut(s)	80, 887
ApoI	RAATTY	1 cut(s)	677
AspLEI	GCGC	3 cut(s)	39, 80, 854
AspS9I	GGNCC	6 cut(s)	184, 230, 240, 272, 486, 940
AsuHPI	GGTGA	2 cut(s)	59, 638
AsuII	TTCGAA	1 cut(s)	413
AvaI	CYCGRG	1 cut(s)	203
AvaII	GGWCC	6 cut(s)	184, 230, 240, 272, 486, 940
BanII	GRGCYC	1 cut(s)	1026
BauI	CACGAG	1 cut(s)	1047
Bbv12I	GWGCWC	2 cut(s)	204, 1048
BbvI	GCAGC	2 cut(s)	67, 874
BccI	CCATC	3 cut(s)	107, 756, 776
BceAI	ACGGC	2 cut(s)	112, 888
BcgI	CGANNNNNNTGC	2 cut(s)	276, 310
BciT130I	CCWGG	3 cut(s)	188, 506, 608
BcoDI	GTCTC	4 cut(s)	87, 272, 353, 1036
BfaI	CTAG	1 cut(s)	429
BfmI	CTRYAG	1 cut(s)	621
BfoI	RGCGCY	2 cut(s)	81, 855
BglI	GCCNNNNNGGC	1 cut(s)	34
BglII	AGATCT	1 cut(s)	916
BisI	GCNGC	4 cut(s)	40, 81, 860, 888
BlsI	GCNGC	4 cut(s)	41, 82, 861, 889
Bme1390I	CCNGG	3 cut(s)	188, 506, 608
Bme18I	GGWCC	6 cut(s)	184, 230, 240, 272, 486, 940
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	6 cut(s)	184, 230, 240, 272, 486, 940
BmiI	GGNNCC	7 cut(s)	137, 231, 232, 241, 487, 488, 663
BmrFI	CCNGG	3 cut(s)	188, 506, 608
BmrI	ACTGGG	2 cut(s)	431, 1022
BmsI	GCATC	1 cut(s)	894
BmuI	ACTGGG	2 cut(s)	431, 1022
BoxI	GACNNNNGTC	1 cut(s)	245
BpmI	CTGGAG	1 cut(s)	43
Bpu14I	TTCGAA	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	820
BsaHI	GRCGYC	1 cut(s)	946
BsaI	GGTCTC	2 cut(s)	272, 353
BsaJI	CCNNGG	2 cut(s)	505, 1054
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	3 cut(s)	388, 496, 845
Bse118I	RCCGGY	1 cut(s)	664
Bse1I	ACTGG	2 cut(s)	437, 1028
BseBI	CCWGG	3 cut(s)	188, 506, 608
BseDI	CCNNGG	2 cut(s)	505, 1054
BseGI	GGATG	3 cut(s)	739, 748, 835
BseLI	CCNNNNNNNGG	3 cut(s)	388, 496, 845
BseMII	CTCAG	1 cut(s)	70
BseNI	ACTGG	2 cut(s)	437, 1028
BseRI	GAGGAG	1 cut(s)	117
BseXI	GCAGC	2 cut(s)	67, 874
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	2 cut(s)	28, 191
BsiHKAI	GWGCWC	2 cut(s)	204, 1048
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	665
BslFI	GGGAC	4 cut(s)	66, 243, 253, 499
BslI	CCNNNNNNNGG	3 cut(s)	388, 496, 845
BsmAI	GTCTC	4 cut(s)	87, 272, 353, 1036
BsmBI	CGTCTC	1 cut(s)	87
BsmFI	GGGAC	4 cut(s)	66, 243, 253, 499
BsnI	GGCC	2 cut(s)	28, 191
Bso31I	GGTCTC	2 cut(s)	272, 353
BsoBI	CYCGRG	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	413
Bsp1286I	GDGCHC	3 cut(s)	204, 1026, 1048
Bsp143I	GATC	4 cut(s)	208, 219, 553, 916
BspACI	CCGC	9 cut(s)	39, 99, 179, 282, 332, 356, 402, 845, 859
BspANI	GGCC	2 cut(s)	28, 191
BspCNI	CTCAG	1 cut(s)	69
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	7 cut(s)	137, 231, 232, 241, 487, 488, 663
BspPI	GGATC	2 cut(s)	216, 548
BspQI	GCTCTTC	1 cut(s)	1014
BspT104I	TTCGAA	1 cut(s)	413
BspTNI	GGTCTC	2 cut(s)	272, 353
BsrBI	CCGCTC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	664
BsrI	ACTGG	2 cut(s)	437, 1028
BssAI	RCCGGY	1 cut(s)	664
BssECI	CCNNGG	2 cut(s)	505, 1054
BssMI	GATC	4 cut(s)	208, 219, 553, 916
BssNAI	GTATAC	1 cut(s)	256
BssNI	GRCGYC	1 cut(s)	946
BssSI	CACGAG	1 cut(s)	1047
BssT1I	CCWWGG	1 cut(s)	1054
Bst1107I	GTATAC	1 cut(s)	256
Bst2BI	CACGAG	1 cut(s)	1047
Bst2UI	CCWGG	3 cut(s)	188, 506, 608
Bst4CI	ACNGT	5 cut(s)	47, 269, 448, 970, 992
Bst6I	CTCTTC	1 cut(s)	1014
BstACI	GRCGYC	1 cut(s)	946
BstBI	TTCGAA	1 cut(s)	413
BstDEI	CTNAG	1 cut(s)	56
BstF5I	GGATG	3 cut(s)	739, 748, 835
BstFNI	CGCG	1 cut(s)	39
BstH2I	RGCGCY	2 cut(s)	81, 855
BstHHI	GCGC	3 cut(s)	39, 80, 854
BstKTI	GATC	4 cut(s)	211, 222, 556, 919
BstMAI	GTCTC	4 cut(s)	87, 272, 353, 1036
BstMBI	GATC	4 cut(s)	208, 219, 553, 916
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 329, 851
BstNI	CCWGG	3 cut(s)	188, 506, 608
BstNSI	RCATGY	2 cut(s)	647, 845
BstPAI	GACNNNNGTC	1 cut(s)	245
BstSCI	CCNGG	3 cut(s)	186, 504, 606
BstSFI	CTRYAG	1 cut(s)	621
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	2 cut(s)	67, 874
BstX2I	RGATCY	1 cut(s)	916
BstYI	RGATCY	1 cut(s)	916
BstZ17I	GTATAC	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	28, 191
BtsCI	GGATG	3 cut(s)	739, 748, 835
CfoI	GCGC	3 cut(s)	39, 80, 854
Cfr10I	RCCGGY	1 cut(s)	664
Cfr13I	GGNCC	6 cut(s)	184, 230, 240, 272, 486, 940
CseI	GACGC	2 cut(s)	638, 954
Csp6I	GTAC	1 cut(s)	426
CviAII	CATG	7 cut(s)	456, 527, 551, 578, 644, 703, 842
CviQI	GTAC	1 cut(s)	426
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	4 cut(s)	210, 221, 555, 918
DpnII	GATC	4 cut(s)	208, 219, 553, 916
DraI	TTTAAA	1 cut(s)	573
DrdI	GACNNNNNNGTC	1 cut(s)	938
DseDI	GACNNNNNNGTC	1 cut(s)	938
Eam1104I	CTCTTC	1 cut(s)	1014
EarI	CTCTTC	1 cut(s)	1014
EciI	GGCGGA	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	1054
Eco24I	GRGCYC	1 cut(s)	1026
Eco31I	GGTCTC	2 cut(s)	272, 353
Eco47I	GGWCC	6 cut(s)	184, 230, 240, 272, 486, 940
Eco57I	CTGAAG	1 cut(s)	905
Eco88I	CYCGRG	1 cut(s)	203
EcoO109I	RGGNCCY	3 cut(s)	230, 240, 486
EcoRII	CCWGG	3 cut(s)	186, 504, 606
EcoT14I	CCWWGG	1 cut(s)	1054
EcoT38I	GRGCYC	1 cut(s)	1026
ErhI	CCWWGG	1 cut(s)	1054
Esp3I	CGTCTC	1 cut(s)	87
FaeI	CATG	7 cut(s)	459, 530, 554, 581, 647, 706, 845
FaqI	GGGAC	4 cut(s)	66, 243, 253, 499
FatI	CATG	7 cut(s)	455, 526, 550, 577, 643, 702, 841
FauI	CCCGC	1 cut(s)	838
FauNDI	CATATG	1 cut(s)	636
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	4 cut(s)	40, 81, 860, 888
FokI	GGATG	3 cut(s)	726, 735, 822
FriOI	GRGCYC	1 cut(s)	1026
Fsp4HI	GCNGC	4 cut(s)	40, 81, 860, 888
FspBI	CTAG	1 cut(s)	429
GlaI	GCGC	3 cut(s)	38, 79, 853
GluI	GCNGC	4 cut(s)	40, 81, 860, 888
GsuI	CTGGAG	1 cut(s)	43
HaeII	RGCGCY	2 cut(s)	81, 855
HaeIII	GGCC	2 cut(s)	28, 191
HapII	CCGG	1 cut(s)	665
HgaI	GACGC	2 cut(s)	638, 954
HhaI	GCGC	3 cut(s)	39, 80, 854
Hin1I	GRCGYC	1 cut(s)	946
Hin1II	CATG	7 cut(s)	459, 530, 554, 581, 647, 706, 845
Hin6I	GCGC	3 cut(s)	37, 78, 852
HinP1I	GCGC	3 cut(s)	37, 78, 852
HinfI	GANTC	7 cut(s)	4, 54, 69, 224, 335, 512, 758
HpaII	CCGG	1 cut(s)	665
HphI	GGTGA	2 cut(s)	59, 638
Hpy166II	GTNNAC	4 cut(s)	256, 272, 399, 829
Hpy188I	TCNGA	8 cut(s)	140, 213, 383, 683, 781, 916, 924, 944
Hpy188III	TCNNGA	5 cut(s)	228, 689, 956, 1005, 1049
Hpy8I	GTNNAC	4 cut(s)	256, 272, 399, 829
Hpy99I	CGWCG	5 cut(s)	47, 77, 251, 263, 948
HpyAV	CCTTC	3 cut(s)	253, 386, 931
HpyCH4III	ACNGT	5 cut(s)	47, 269, 448, 970, 992
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	4 cut(s)	526, 544, 647, 890
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 329, 851
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	1 cut(s)	291
Hsp92I	GRCGYC	1 cut(s)	946
Hsp92II	CATG	7 cut(s)	459, 530, 554, 581, 647, 706, 845
HspAI	GCGC	3 cut(s)	37, 78, 852
KflI	GGGWCCC	2 cut(s)	230, 486
Kzo9I	GATC	4 cut(s)	208, 219, 553, 916
LguI	GCTCTTC	1 cut(s)	1014
LmnI	GCTCC	1 cut(s)	661
Lsp1109I	GCAGC	2 cut(s)	67, 874
LweI	GCATC	1 cut(s)	894
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	4 cut(s)	349, 626, 992, 1049
MalI	GATC	4 cut(s)	210, 221, 555, 918
MbiI	CCGCTC	1 cut(s)	284
MboI	GATC	4 cut(s)	208, 219, 553, 916
MboII	GAAGA	2 cut(s)	911, 1031
MflI	RGATCY	1 cut(s)	916
MhlI	GDGCHC	3 cut(s)	204, 1026, 1048
MluCI	AATT	5 cut(s)	301, 561, 677, 822, 927
MlyI	GAGTC	3 cut(s)	48, 233, 344
MmeI	TCCRAC	3 cut(s)	46, 448, 967
MnlI	CCTC	9 cut(s)	18, 43, 95, 98, 199, 382, 567, 753, 1001
MseI	TTAA	4 cut(s)	572, 654, 867, 986
MslI	CAYNNNNRTG	3 cut(s)	549, 753, 840
MspA1I	CMGCKG	2 cut(s)	332, 356
MspI	CCGG	1 cut(s)	665
MspR9I	CCNGG	3 cut(s)	188, 506, 608
MvaI	CCWGG	3 cut(s)	188, 506, 608
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	3 cut(s)	34, 329, 851
NdeI	CATATG	1 cut(s)	636
NdeII	GATC	4 cut(s)	208, 219, 553, 916
NlaIII	CATG	7 cut(s)	459, 530, 554, 581, 647, 706, 845
NlaIV	GGNNCC	7 cut(s)	137, 231, 232, 241, 487, 488, 663
NmuCI	GTSAC	4 cut(s)	349, 626, 992, 1049
NspI	RCATGY	2 cut(s)	647, 845
NspV	TTCGAA	1 cut(s)	413
PaeR7I	CTCGAG	1 cut(s)	203
PciSI	GCTCTTC	1 cut(s)	1014
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PfeI	GAWTC	4 cut(s)	4, 69, 512, 758
PkrI	GCNGC	4 cut(s)	41, 82, 861, 889
PleI	GAGTC	3 cut(s)	48, 232, 343
PpsI	GAGTC	3 cut(s)	48, 232, 343
PpuMI	RGGWCCY	3 cut(s)	230, 240, 486
PshAI	GACNNNNGTC	1 cut(s)	245
Psp5II	RGGWCCY	3 cut(s)	230, 240, 486
Psp6I	CCWGG	3 cut(s)	186, 504, 606
PspGI	CCWGG	3 cut(s)	186, 504, 606
PspN4I	GGNNCC	7 cut(s)	137, 231, 232, 241, 487, 488, 663
PspPI	GGNCC	6 cut(s)	184, 230, 240, 272, 486, 940
PspPPI	RGGWCCY	3 cut(s)	230, 240, 486
PspXI	VCTCGAGB	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	916
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
RseI	CAYNNNNRTG	3 cut(s)	549, 753, 840
SapI	GCTCTTC	1 cut(s)	1014
SaqAI	TTAA	4 cut(s)	572, 654, 867, 986
SatI	GCNGC	4 cut(s)	40, 81, 860, 888
Sau3AI	GATC	4 cut(s)	208, 219, 553, 916
Sau96I	GGNCC	6 cut(s)	184, 230, 240, 272, 486, 940
SchI	GAGTC	3 cut(s)	48, 233, 344
ScrFI	CCNGG	3 cut(s)	188, 506, 608
SduI	GDGCHC	3 cut(s)	204, 1026, 1048
SfaNI	GCATC	1 cut(s)	894
SfcI	CTRYAG	1 cut(s)	621
Sfr274I	CTCGAG	1 cut(s)	203
SfuI	TTCGAA	1 cut(s)	413
SinI	GGWCC	6 cut(s)	184, 230, 240, 272, 486, 940
SlaI	CTCGAG	1 cut(s)	203
SmiMI	CAYNNNNRTG	3 cut(s)	549, 753, 840
SmlI	CTYRAG	2 cut(s)	203, 799
SmoI	CTYRAG	2 cut(s)	203, 799
Sse9I	AATT	5 cut(s)	301, 561, 677, 822, 927
SsiI	CCGC	9 cut(s)	39, 99, 179, 282, 332, 356, 402, 845, 859
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	3 cut(s)	186, 504, 606
StyI	CCWWGG	1 cut(s)	1054
TaaI	ACNGT	5 cut(s)	47, 269, 448, 970, 992
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	4 cut(s)	204, 222, 286, 413
TasI	AATT	5 cut(s)	301, 561, 677, 822, 927
TauI	GCSGC	2 cut(s)	42, 862
TfiI	GAWTC	4 cut(s)	4, 69, 512, 758
Tru1I	TTAA	4 cut(s)	572, 654, 867, 986
Tru9I	TTAA	4 cut(s)	572, 654, 867, 986
TseFI	GTSAC	4 cut(s)	349, 626, 992, 1049
TseI	GCWGC	2 cut(s)	80, 887
Tsp45I	GTSAC	4 cut(s)	349, 626, 992, 1049
TspDTI	ATGAA	4 cut(s)	17, 543, 653, 822
TspGWI	ACGGA	3 cut(s)	105, 276, 401
VpaK11BI	GGWCC	6 cut(s)	184, 230, 240, 272, 486, 940
XapI	RAATTY	1 cut(s)	677
XceI	RCATGY	2 cut(s)	647, 845
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1012
XhoI	CTCGAG	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.