Prupe.1G115800_v2.0.a1

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0008465
Physical Location & Seq
Reverse (-)
9144423 .. 9148398
3976 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G115800.2

Sequence Viewer

Length: 1149 bp
ATGCTTCAGGCATTGATGAATCTGCTCTCTCTGTGCTGGAGGCCGTTTGGGCGAGGCAACGGTGAGGGACTCAACTCTGTCGGAATTGTCGGTGCAAATTTCCGAGGCGGTGGACGAGATGGCAAAGATAGCTTGCTTTGGTTCCGAGATTTCGGAAAGTACGCGTGGGGCGATTTCTCCATGGCCGTGGTTCAAGCCAACCAGGTGCTCGAGGACCAGAGTCAGATCGAGTCTGGACCCTTTGGGACCTTCGTCGGCGTTTATGATGGCCATGGTGGCCCCGAGGCTGCTCGATACGTTTGCGACAATTTATTCAGACATTTCCAAGCAATATCAGCAGAGTCAGATGGGGTTGTGACAGCAGAGACCATTAGAAATGCTTTTCTCCGAACAGAGGAAGGGTTTACTGCTCTTGTTTCAGAGTTGTGGAGTACTAGACCCAATGTAGCAACTGTTGGGTCATGTTGTCTGGTTGGAGTGATATGTCAGCGGACCTTATTTGTGGCAAACCTTGGAGATTCCCGTGTTGTGTTGGGGAAGAGAGTGGGAAACACTGGGGAAGTTGCTGCGATTCAGTTATCCACTGAACACAATGCAAATCTTGAGGAGGTTAGGCACGAACTGAAAGATTTGCACCCACATGATCCTCAAATTGTTGTTTTAAAGCATGGAGTTTGGAGAGTAAAAGGGATTATCCAGGTATCGAAATCTATTGGTGACGTATATATGAAACATGCACAGTTTAACAGGGAGCCAATTAATGCAAAATTCAGACTTCCTGAACCAATGCACATGCCTATCTTGTCTGCCAATCCGACTATTCTTTCTCATCCTCTCCATCCAAATGATTCTTTCCTTATATTTGCATCTGATGGTCTATGGGAACACTTGAGTAATGAAAAAGCTGTTGAGATTGTCCACAAGCATCCACATGCGGGAAGTGCCAAAAGGCTTGTAAAGACTGCTCTCCAAGAAGCTGCAAGAAAAAGAGAAATGAGATATTCAGATCTTCGGAAAATTGACAAGAAAGTCCGACGCCATTTTCATGATGATATAACTGTCATTGTTTTATTCTTAAACCATGACTTAATATCCAGAGGCACAGTGGAAGAACCTCCAGTCTCAATAAGAAGTGCTGTTGACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

383

Amino Acids

42.5

Weight (kDa)

7.34

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1028
AccII CGCG 1 cut(s) 164
AciI CCGC 3 cut(s) 108, 490, 935
AclWI GGATC 1 cut(s) 638
AcoI YGGCCR 2 cut(s) 183, 268
AcsI RAATTY 2 cut(s) 97, 767
AcyI GRCGYC 1 cut(s) 1036
AfaI GTAC 2 cut(s) 161, 433
AfiI CCNNNNNNNGG 2 cut(s) 394, 935
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 1 cut(s) 194
AjnI CCWGG 2 cut(s) 201, 696
AluBI AGCT 3 cut(s) 132, 905, 977
AluI AGCT 3 cut(s) 132, 905, 977
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 2 cut(s) 359, 1126
AlwI GGATC 1 cut(s) 638
Ama87I CYCGRG 2 cut(s) 209, 281
AoxI GGCC 4 cut(s) 41, 183, 268, 277
ApeKI GCWGC 3 cut(s) 287, 566, 977
ApoI RAATTY 2 cut(s) 97, 767
AseI ATTAAT 1 cut(s) 759
AspS9I GGNCC 5 cut(s) 214, 236, 246, 278, 492
AsuHPI GGTGA 2 cut(s) 74, 728
AvaI CYCGRG 2 cut(s) 209, 281
AvaII GGWCC 4 cut(s) 214, 236, 246, 492
BalI TGGCCA 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 3 cut(s) 274, 553, 964
BccI CCATC 5 cut(s) 113, 260, 341, 846, 866
BceAI ACGGC 2 cut(s) 28, 170
BcgI CGANNNNNNTGC 2 cut(s) 282, 316
BciT130I CCWGG 2 cut(s) 203, 698
BcoDI GTCTC 2 cut(s) 359, 1126
BfaI CTAG 1 cut(s) 435
BglI GCCNNNNNGGC 2 cut(s) 49, 276
BglII AGATCT 1 cut(s) 1006
BisI GCNGC 3 cut(s) 288, 567, 978
BlsI GCNGC 3 cut(s) 289, 568, 979
BmcAI AGTACT 1 cut(s) 433
Bme1390I CCNGG 2 cut(s) 203, 698
Bme18I GGWCC 4 cut(s) 214, 236, 246, 492
BmeT110I CYCGRG 2 cut(s) 209, 281
BmgT120I GGNCC 5 cut(s) 214, 236, 246, 278, 492
BmiI GGNNCC 5 cut(s) 143, 238, 247, 280, 753
BmrFI CCNGG 2 cut(s) 203, 698
BmrI ACTGGG 1 cut(s) 564
BmsI GCATC 2 cut(s) 875, 934
BmuI ACTGGG 1 cut(s) 564
BoxI GACNNNNGTC 2 cut(s) 219, 251
BpmI CTGGAG 2 cut(s) 58, 1101
BpuEI CTTGAG 2 cut(s) 623, 910
BsaHI GRCGYC 1 cut(s) 1036
BsaI GGTCTC 1 cut(s) 359
BsaJI CCNNGG 6 cut(s) 103, 180, 186, 271, 282, 511
Bsc4I CCNNNNNNNGG 2 cut(s) 394, 935
Bse1I ACTGG 2 cut(s) 559, 1118
BseBI CCWGG 2 cut(s) 203, 698
BseDI CCNNGG 6 cut(s) 103, 180, 186, 271, 282, 511
BseGI GGATG 3 cut(s) 829, 838, 925
BseLI CCNNNNNNNGG 2 cut(s) 394, 935
BseNI ACTGG 2 cut(s) 559, 1118
BseRI GAGGAG 1 cut(s) 620
BseXI GCAGC 3 cut(s) 274, 553, 964
Bsh1236I CGCG 1 cut(s) 164
BshFI GGCC 4 cut(s) 43, 185, 270, 279
BsiHKAI GWGCWC 1 cut(s) 210
BsiHKCI CYCGRG 2 cut(s) 209, 281
BslFI GGGAC 2 cut(s) 81, 259
BslI CCNNNNNNNGG 2 cut(s) 394, 935
BsmAI GTCTC 2 cut(s) 359, 1126
BsmFI GGGAC 2 cut(s) 81, 259
BsnI GGCC 4 cut(s) 43, 185, 270, 279
Bso31I GGTCTC 1 cut(s) 359
BsoBI CYCGRG 2 cut(s) 209, 281
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 3 cut(s) 225, 643, 1006
Bsp19I CCATGG 2 cut(s) 180, 271
BspACI CCGC 3 cut(s) 108, 490, 935
BspANI GGCC 4 cut(s) 43, 185, 270, 279
BspFNI CGCG 1 cut(s) 164
BspHI TCATGA 1 cut(s) 1045
BspLI GGNNCC 5 cut(s) 143, 238, 247, 280, 753
BspPI GGATC 1 cut(s) 638
BspTNI GGTCTC 1 cut(s) 359
BsrI ACTGG 2 cut(s) 559, 1118
BssECI CCNNGG 6 cut(s) 103, 180, 186, 271, 282, 511
BssMI GATC 3 cut(s) 225, 643, 1006
BssNI GRCGYC 1 cut(s) 1036
BssT1I CCWWGG 3 cut(s) 180, 271, 511
Bst2UI CCWGG 2 cut(s) 203, 698
Bst4CI ACNGT 5 cut(s) 62, 454, 741, 1060, 1105
Bst6I CTCTTC 1 cut(s) 533
BstACI GRCGYC 1 cut(s) 1036
BstC8I GCNNGC 1 cut(s) 134
BstDSI CCRYGG 3 cut(s) 180, 186, 271
BstF5I GGATG 3 cut(s) 829, 838, 925
BstFNI CGCG 1 cut(s) 164
BstKTI GATC 3 cut(s) 228, 646, 1009
BstMAI GTCTC 2 cut(s) 359, 1126
BstMBI GATC 3 cut(s) 225, 643, 1006
BstMWI GCNNNNNNNGC 5 cut(s) 49, 129, 276, 335, 941
BstNI CCWGG 2 cut(s) 203, 698
BstNSI RCATGY 3 cut(s) 737, 796, 935
BstPAI GACNNNNGTC 2 cut(s) 219, 251
BstSCI CCNGG 2 cut(s) 201, 696
BstUI CGCG 1 cut(s) 164
BstV1I GCAGC 3 cut(s) 274, 553, 964
BstX2I RGATCY 1 cut(s) 1006
BstXI CCANNNNNNTGG 1 cut(s) 187
BstYI RGATCY 1 cut(s) 1006
BsuRI GGCC 4 cut(s) 43, 185, 270, 279
BtgI CCRYGG 3 cut(s) 180, 186, 271
BtsCI GGATG 3 cut(s) 829, 838, 925
BtsIMutI CAGTG 4 cut(s) 552, 582, 1110, 1144
Cac8I GCNNGC 1 cut(s) 134
CciI TCATGA 1 cut(s) 1045
Cfr13I GGNCC 5 cut(s) 214, 236, 246, 278, 492
CseI GACGC 1 cut(s) 1044
CsiI ACCWGGT 1 cut(s) 201
Csp6I GTAC 2 cut(s) 160, 432
CviQI GTAC 2 cut(s) 160, 432
DpnI GATC 3 cut(s) 227, 645, 1008
DpnII GATC 3 cut(s) 225, 643, 1006
DraI TTTAAA 1 cut(s) 663
DrdI GACNNNNNNGTC 1 cut(s) 1028
DseDI GACNNNNNNGTC 1 cut(s) 1028
EaeI YGGCCR 2 cut(s) 183, 268
Eam1104I CTCTTC 1 cut(s) 533
EarI CTCTTC 1 cut(s) 533
Eco130I CCWWGG 3 cut(s) 180, 271, 511
Eco31I GGTCTC 1 cut(s) 359
Eco47I GGWCC 4 cut(s) 214, 236, 246, 492
Eco88I CYCGRG 2 cut(s) 209, 281
EcoO109I RGGNCCY 1 cut(s) 246
EcoRII CCWGG 2 cut(s) 201, 696
EcoT14I CCWWGG 3 cut(s) 180, 271, 511
ErhI CCWWGG 3 cut(s) 180, 271, 511
FaqI GGGAC 2 cut(s) 81, 259
FauI CCCGC 1 cut(s) 928
Fnu4HI GCNGC 3 cut(s) 288, 567, 978
FokI GGATG 3 cut(s) 816, 825, 912
Fsp4HI GCNGC 3 cut(s) 288, 567, 978
FspBI CTAG 1 cut(s) 435
GluI GCNGC 3 cut(s) 288, 567, 978
GsuI CTGGAG 2 cut(s) 58, 1101
HaeIII GGCC 4 cut(s) 43, 185, 270, 279
HgaI GACGC 1 cut(s) 1044
Hin1I GRCGYC 1 cut(s) 1036
HincII GTYRAC 1 cut(s) 1141
HindII GTYRAC 1 cut(s) 1141
HinfI GANTC 8 cut(s) 19, 69, 220, 230, 341, 518, 571, 848
HphI GGTGA 2 cut(s) 74, 728
Hpy166II GTNNAC 4 cut(s) 113, 405, 919, 1141
Hpy188III TCNNGA 5 cut(s) 234, 602, 779, 1046, 1095
Hpy8I GTNNAC 4 cut(s) 113, 405, 919, 1141
Hpy99I CGWCG 2 cut(s) 257, 1038
HpyAV CCTTC 2 cut(s) 259, 392
HpyCH4III ACNGT 5 cut(s) 62, 454, 741, 1060, 1105
HpyCH4IV ACGT 2 cut(s) 297, 720
HpyCH4V TGCA 8 cut(s) 95, 596, 634, 737, 764, 790, 866, 980
HpyF10VI GCNNNNNNNGC 5 cut(s) 49, 129, 276, 335, 941
HpySE526I ACGT 2 cut(s) 297, 720
Hsp92I GRCGYC 1 cut(s) 1036
Kzo9I GATC 3 cut(s) 225, 643, 1006
LmnI GCTCC 1 cut(s) 751
Lsp1109I GCAGC 3 cut(s) 274, 553, 964
LweI GCATC 2 cut(s) 875, 934
MabI ACCWGGT 1 cut(s) 201
MaeI CTAG 1 cut(s) 435
MaeII ACGT 2 cut(s) 297, 720
MaeIII GTNAC 2 cut(s) 355, 716
MalI GATC 3 cut(s) 227, 645, 1008
MboI GATC 3 cut(s) 225, 643, 1006
MboII GAAGA 3 cut(s) 550, 1001, 1121
MflI RGATCY 1 cut(s) 1006
MhlI GDGCHC 1 cut(s) 210
MlsI TGGCCA 1 cut(s) 270
MluCI AATT 7 cut(s) 84, 97, 307, 651, 756, 767, 1017
MluI ACGCGT 1 cut(s) 162
MluNI TGGCCA 1 cut(s) 270
MlyI GAGTC 4 cut(s) 63, 229, 239, 350
MmeI TCCRAC 4 cut(s) 61, 454, 839, 1057
Mox20I TGGCCA 1 cut(s) 270
MscI TGGCCA 1 cut(s) 270
MseI TTAA 5 cut(s) 662, 744, 759, 1076, 1088
MslI CAYNNNNRTG 5 cut(s) 185, 639, 843, 930, 1044
Msp20I TGGCCA 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 490
MspR9I CCNGG 2 cut(s) 203, 698
MvaI CCWGG 2 cut(s) 203, 698
MvnI CGCG 1 cut(s) 164
MwoI GCNNNNNNNGC 5 cut(s) 49, 129, 276, 335, 941
NcoI CCATGG 2 cut(s) 180, 271
NdeII GATC 3 cut(s) 225, 643, 1006
NlaIV GGNNCC 5 cut(s) 143, 238, 247, 280, 753
NmuCI GTSAC 2 cut(s) 355, 716
NspI RCATGY 3 cut(s) 737, 796, 935
PaeR7I CTCGAG 1 cut(s) 209
PagI TCATGA 1 cut(s) 1045
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PfeI GAWTC 4 cut(s) 19, 518, 571, 848
PkrI GCNGC 3 cut(s) 289, 568, 979
PleI GAGTC 4 cut(s) 63, 228, 238, 349
PpsI GAGTC 4 cut(s) 63, 228, 238, 349
PpuMI RGGWCCY 1 cut(s) 246
PshAI GACNNNNGTC 2 cut(s) 219, 251
PshBI ATTAAT 1 cut(s) 759
Psp5II RGGWCCY 1 cut(s) 246
Psp6I CCWGG 2 cut(s) 201, 696
PspGI CCWGG 2 cut(s) 201, 696
PspN4I GGNNCC 5 cut(s) 143, 238, 247, 280, 753
PspPI GGNCC 5 cut(s) 214, 236, 246, 278, 492
PspPPI RGGWCCY 1 cut(s) 246
PspXI VCTCGAGB 1 cut(s) 209
PsuI RGATCY 1 cut(s) 1006
RsaI GTAC 2 cut(s) 161, 433
RsaNI GTAC 2 cut(s) 160, 432
RseI CAYNNNNRTG 5 cut(s) 185, 639, 843, 930, 1044
SaqAI TTAA 5 cut(s) 662, 744, 759, 1076, 1088
SatI GCNGC 3 cut(s) 288, 567, 978
Sau3AI GATC 3 cut(s) 225, 643, 1006
Sau96I GGNCC 5 cut(s) 214, 236, 246, 278, 492
ScaI AGTACT 1 cut(s) 433
SchI GAGTC 4 cut(s) 63, 229, 239, 350
ScrFI CCNGG 2 cut(s) 203, 698
SduI GDGCHC 1 cut(s) 210
SexAI ACCWGGT 1 cut(s) 201
SfaNI GCATC 2 cut(s) 875, 934
SfiI GGCCNNNNNGGCC 1 cut(s) 276
Sfr274I CTCGAG 1 cut(s) 209
SinI GGWCC 4 cut(s) 214, 236, 246, 492
SlaI CTCGAG 1 cut(s) 209
SmiMI CAYNNNNRTG 5 cut(s) 185, 639, 843, 930, 1044
SmlI CTYRAG 3 cut(s) 209, 602, 889
SmoI CTYRAG 3 cut(s) 209, 602, 889
Sse9I AATT 7 cut(s) 84, 97, 307, 651, 756, 767, 1017
SsiI CCGC 3 cut(s) 108, 490, 935
SspMI CTAG 1 cut(s) 435
StyD4I CCNGG 2 cut(s) 201, 696
StyI CCWWGG 3 cut(s) 180, 271, 511
TaaI ACNGT 5 cut(s) 62, 454, 741, 1060, 1105
TaiI ACGT 2 cut(s) 300, 723
TaqI TCGA 4 cut(s) 210, 228, 292, 704
TasI AATT 7 cut(s) 84, 97, 307, 651, 756, 767, 1017
TatI WGTACW 1 cut(s) 431
TfiI GAWTC 4 cut(s) 19, 518, 571, 848
Tru1I TTAA 5 cut(s) 662, 744, 759, 1076, 1088
Tru9I TTAA 5 cut(s) 662, 744, 759, 1076, 1088
TscAI CASTG 3 cut(s) 559, 589, 1110
TseFI GTSAC 2 cut(s) 355, 716
TseI GCWGC 3 cut(s) 287, 566, 977
Tsp45I GTSAC 2 cut(s) 355, 716
TspDTI ATGAA 4 cut(s) 32, 743, 912, 1034
TspRI CASTG 3 cut(s) 559, 589, 1110
VpaK11BI GGWCC 4 cut(s) 214, 236, 246, 492
VspI ATTAAT 1 cut(s) 759
XapI RAATTY 2 cut(s) 97, 767
XceI RCATGY 3 cut(s) 737, 796, 935
XcmI CCANNNNNNNNNTGG 1 cut(s) 1102
XhoI CTCGAG 1 cut(s) 209
XspI CTAG 1 cut(s) 435
ZrmI AGTACT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.