Rorug04G0204000

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0008465
Physical Location & Seq
Reverse (-)
35470026 .. 35471351
1326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0204000.1

Sequence Viewer

Length: 1326 bp
ATGGTGAAACCAATCTCTAAGCCAAGAGGATGTAAACTCACTCATATTCTTTATGCAGATGACTTGTTTATTTTTTATCTAGGGGATGCTCGCTCTCTTAACCATTTACAACTCTTCCTTGACACTTATGGTGCTGCTTCAGGGCAATTGGTGAACAAAGATAAAAGTACTTTTTACTTGGGAAGCGTTCATTCTCATCGGCGTAAGCAGGTGAGGAGGATTTTGGGATTTAAATTGGGTACTGCTCCTTTCACTTATTTGGGAGTGCCCATTTTCAAAGGCAAGCCGCGACGTATTCATCTTCAAGCTATAGCGGATAAAGCAAAAAGTCGATTGGCAGGATGGAAAGGAAAATTCTTATCCATGGCAGGCCTAGTTCAATTGGTTCATGATGTTTTCCAGAGTCTATTGCTACATAGTTTCTCTGTTTACTTATGGCCTTCCTCTCTCTTAAAGCAGTTGTCCACTTGTGCTCGAAATTTTATTTGGTCTGGGGATATTGCCATTAAGAAGTTGGTTACAGTCTCATGGAGACAAGTTTGCTCCCTGAAGTTGGAATCTGGACTTGGAGTAGTATTACGTCAGGATTACGTCAGGAGTAGTATTACGTCAGGATCATTGTGGGGTTCTTTCAACACCTCTGCTTTCTTGAGTTTGGGTTGGAGTACTATTACGTCAGGATCATTGTGGGGTTCTTTTGCTTGCACACGGTTCTCTATATCTTGTTCTATGAGGTTTCGTTACTTTGGTTCTTCTATTTGGCATGGTTTAAAGGTTGTTATTCCTCTGATTTTTCAACGTTCAAGATGGCTTATTGGGGATGGAAAATCGGTTCTGTTTTGGTCAGATAGATGGCTTGGTGAACCTCTAATTGATAAGGTGCAGGGTAGTCAATTTCCTATGCCTTTGTTGACAACAGTTGCATCTTTTATCTCAGATCAACAATGGGTTATGCCACATAATTTCTCCATTTTATTTCCTGCTTTGGCCACTGAAATTCTTCACTTACCTTTACCAATTGAAGCGGAAAAGGATGTTTTAATATGGGAAGACTCAAGCTCTGGGATTTTCTCTTTTGTTGAGGGTTATAATTGTGTTCGCACTCACTTTCCTACGAGGGATTACATGGCAAAGCTATGGCAGCATTTTATTCCTCCAAGATTCTCTATTCTCGTTTGGCGAATCTTACATACCAAATTGCCCACGGATGACCAGCTTCAGAAACGTGGCATTCCAATGGTTTCGGTATGTCAACTTTGCTCATTTAGTTCTGTTGAGGACCTGCATCATTTATTTGTTTCTTGTTCCTTTGCCCAACATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

441

Amino Acids

50.06

Weight (kDa)

9.75

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 357 - 441 3.8e-20 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1089
AarI CACCTGC 1 cut(s) 199
Acc36I ACCTGC 2 cut(s) 199, 1290
AccII CGCG 1 cut(s) 289
AciI CCGC 3 cut(s) 287, 314, 1025
AclI AACGTT 1 cut(s) 799
AclWI GGATC 2 cut(s) 622, 688
AcoI YGGCCR 1 cut(s) 987
AcsI RAATTY 3 cut(s) 353, 478, 996
AcuI CTGAAG 3 cut(s) 123, 569, 1202
AfaI GTAC 3 cut(s) 169, 241, 667
AfiI CCNNNNNNNGG 1 cut(s) 553
AflIII ACRYGT 1 cut(s) 1318
AgsI TTSAA 7 cut(s) 277, 305, 380, 634, 797, 804, 1022
AjuI GAANNNNNNNTTGG 4 cut(s) 469, 501, 549, 581
AloI GAACNNNNNNTCC 2 cut(s) 816, 848
AluBI AGCT 4 cut(s) 308, 1059, 1135, 1216
AluI AGCT 4 cut(s) 308, 1059, 1135, 1216
Alw21I GWGCWC 1 cut(s) 475
Alw26I GTCTC 2 cut(s) 526, 529
AlwI GGATC 2 cut(s) 622, 688
AoxI GGCC 3 cut(s) 370, 437, 987
ApeKI GCWGC 2 cut(s) 134, 1141
ApoI RAATTY 3 cut(s) 353, 478, 996
Asp700I GAANNNNTTC 1 cut(s) 999
AspS9I GGNCC 1 cut(s) 1279
AsuHPI GGTGA 4 cut(s) 16, 163, 223, 872
AvaII GGWCC 1 cut(s) 1279
BaeGI GKGCMC 1 cut(s) 270
BalI TGGCCA 1 cut(s) 989
BbsI GAAGAC 1 cut(s) 1056
Bbv12I GWGCWC 1 cut(s) 475
BbvI GCAGC 2 cut(s) 121, 1153
BccI CCATC 4 cut(s) 336, 801, 815, 846
BcoDI GTCTC 2 cut(s) 526, 529
BfaI CTAG 3 cut(s) 80, 374, 1324
BfmI CTRYAG 1 cut(s) 309
BfuAI ACCTGC 2 cut(s) 199, 1290
BisI GCNGC 3 cut(s) 135, 287, 1142
BlsI GCNGC 3 cut(s) 136, 288, 1143
BmcAI AGTACT 2 cut(s) 169, 667
Bme18I GGWCC 1 cut(s) 1279
BmgT120I GGNCC 1 cut(s) 1279
BmsI GCATC 3 cut(s) 76, 932, 1294
BpiI GAAGAC 1 cut(s) 1056
BpuEI CTTGAG 2 cut(s) 670, 1039
BsaJI CCNNGG 2 cut(s) 363, 1203
Bsc4I CCNNNNNNNGG 1 cut(s) 553
BseDI CCNNGG 2 cut(s) 363, 1203
BseGI GGATG 6 cut(s) 35, 91, 347, 826, 1039, 1213
BseLI CCNNNNNNNGG 1 cut(s) 553
BseMII CTCAG 1 cut(s) 948
BseRI GAGGAG 1 cut(s) 229
BseSI GKGCMC 1 cut(s) 270
BseXI GCAGC 2 cut(s) 121, 1153
BsgI GTGCAG 1 cut(s) 902
Bsh1236I CGCG 1 cut(s) 289
BshFI GGCC 3 cut(s) 372, 439, 989
BsiHKAI GWGCWC 1 cut(s) 475
BslI CCNNNNNNNGG 1 cut(s) 553
BsmAI GTCTC 2 cut(s) 526, 529
BsmI GAATGC 1 cut(s) 1230
BsnI GGCC 3 cut(s) 372, 439, 989
Bsp1286I GDGCHC 2 cut(s) 270, 475
Bsp143I GATC 3 cut(s) 614, 680, 937
Bsp19I CCATGG 1 cut(s) 363
BspACI CCGC 3 cut(s) 287, 314, 1025
BspANI GGCC 3 cut(s) 372, 439, 989
BspCNI CTCAG 1 cut(s) 947
BspFNI CGCG 1 cut(s) 289
BspHI TCATGA 1 cut(s) 388
BspMI ACCTGC 2 cut(s) 199, 1290
BspPI GGATC 2 cut(s) 622, 688
BssECI CCNNGG 2 cut(s) 363, 1203
BssMI GATC 3 cut(s) 614, 680, 937
BssT1I CCWWGG 1 cut(s) 363
Bst4CI ACNGT 3 cut(s) 523, 711, 919
Bst6I CTCTTC 1 cut(s) 119
BstC8I GCNNGC 4 cut(s) 91, 284, 370, 703
BstDEI CTNAG 2 cut(s) 18, 934
BstDSI CCRYGG 2 cut(s) 363, 1203
BstF5I GGATG 6 cut(s) 35, 91, 347, 826, 1039, 1213
BstFNI CGCG 1 cut(s) 289
BstKTI GATC 3 cut(s) 617, 683, 940
BstMAI GTCTC 2 cut(s) 526, 529
BstMBI GATC 3 cut(s) 614, 680, 937
BstMWI GCNNNNNNNGC 2 cut(s) 320, 1141
BstNSI RCATGY 1 cut(s) 1322
BstSFI CTRYAG 1 cut(s) 309
BstSLI GKGCMC 1 cut(s) 270
BstUI CGCG 1 cut(s) 289
BstV1I GCAGC 2 cut(s) 121, 1153
BstV2I GAAGAC 1 cut(s) 1056
BsuRI GGCC 3 cut(s) 372, 439, 989
BtgI CCRYGG 2 cut(s) 363, 1203
BtsCI GGATG 6 cut(s) 35, 91, 347, 826, 1039, 1213
BtsIMutI CAGTG 1 cut(s) 990
BveI ACCTGC 2 cut(s) 199, 1290
Cac8I GCNNGC 4 cut(s) 91, 284, 370, 703
CciI TCATGA 1 cut(s) 388
Cfr13I GGNCC 1 cut(s) 1279
Csp6I GTAC 3 cut(s) 168, 240, 666
CviAII CATG 6 cut(s) 364, 389, 528, 764, 1126, 1319
CviQI GTAC 3 cut(s) 168, 240, 666
DdeI CTNAG 2 cut(s) 18, 934
DpnI GATC 3 cut(s) 616, 682, 939
DpnII GATC 3 cut(s) 614, 680, 937
DraI TTTAAA 2 cut(s) 232, 771
EaeI YGGCCR 1 cut(s) 987
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 363
Eco147I AGGCCT 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 1279
Eco57I CTGAAG 3 cut(s) 123, 569, 1202
EcoO109I RGGNCCY 1 cut(s) 1279
EcoT14I CCWWGG 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 6 cut(s) 367, 392, 531, 767, 1129, 1322
FatI CATG 6 cut(s) 363, 388, 527, 763, 1125, 1318
Fnu4HI GCNGC 3 cut(s) 135, 287, 1142
FokI GGATG 6 cut(s) 42, 98, 354, 833, 1046, 1220
Fsp4HI GCNGC 3 cut(s) 135, 287, 1142
FspBI CTAG 3 cut(s) 80, 374, 1324
GluI GCNGC 3 cut(s) 135, 287, 1142
HaeIII GGCC 3 cut(s) 372, 439, 989
Hin1II CATG 6 cut(s) 367, 392, 531, 767, 1129, 1322
HincII GTYRAC 2 cut(s) 912, 1253
HindII GTYRAC 2 cut(s) 912, 1253
HinfI GANTC 5 cut(s) 403, 557, 1052, 1161, 1182
HphI GGTGA 4 cut(s) 16, 163, 223, 872
Hpy166II GTNNAC 7 cut(s) 35, 154, 430, 465, 863, 912, 1253
Hpy188I TCNGA 4 cut(s) 789, 847, 937, 1221
Hpy188III TCNNGA 9 cut(s) 389, 400, 561, 584, 595, 612, 649, 678, 804
Hpy8I GTNNAC 7 cut(s) 35, 154, 430, 465, 863, 912, 1253
Hpy99I CGWCG 1 cut(s) 294
HpyAV CCTTC 1 cut(s) 450
HpyCH4III ACNGT 3 cut(s) 523, 711, 919
HpyCH4IV ACGT 7 cut(s) 292, 580, 591, 608, 674, 799, 1225
HpyCH4V TGCA 5 cut(s) 56, 705, 883, 923, 1285
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 1141
HpyF3I CTNAG 2 cut(s) 18, 934
HpySE526I ACGT 7 cut(s) 292, 580, 591, 608, 674, 799, 1225
Hsp92II CATG 6 cut(s) 367, 392, 531, 767, 1129, 1322
Kzo9I GATC 3 cut(s) 614, 680, 937
LmnI GCTCC 2 cut(s) 250, 548
Lsp1109I GCAGC 2 cut(s) 121, 1153
LweI GCATC 3 cut(s) 76, 932, 1294
MaeI CTAG 3 cut(s) 80, 374, 1324
MaeII ACGT 7 cut(s) 292, 580, 591, 608, 674, 799, 1225
MaeIII GTNAC 2 cut(s) 517, 740
MalI GATC 3 cut(s) 616, 682, 939
MboI GATC 3 cut(s) 614, 680, 937
MboII GAAGA 5 cut(s) 106, 293, 744, 992, 1061
MfeI CAATTG 3 cut(s) 146, 380, 1017
MhlI GDGCHC 2 cut(s) 270, 475
MlsI TGGCCA 1 cut(s) 989
MluNI TGGCCA 1 cut(s) 989
MlyI GAGTC 2 cut(s) 412, 1046
MmeI TCCRAC 2 cut(s) 534, 641
Mox20I TGGCCA 1 cut(s) 989
MroXI GAANNNNTTC 1 cut(s) 999
MscI TGGCCA 1 cut(s) 989
MseI TTAA 6 cut(s) 99, 231, 452, 507, 770, 1040
MslI CAYNNNNRTG 1 cut(s) 1235
Msp20I TGGCCA 1 cut(s) 989
MunI CAATTG 3 cut(s) 146, 380, 1017
Mva1269I GAATGC 1 cut(s) 1230
MvnI CGCG 1 cut(s) 289
MwoI GCNNNNNNNGC 2 cut(s) 320, 1141
NcoI CCATGG 1 cut(s) 363
NdeII GATC 3 cut(s) 614, 680, 937
NlaIII CATG 6 cut(s) 367, 392, 531, 767, 1129, 1322
NspI RCATGY 1 cut(s) 1322
PagI TCATGA 1 cut(s) 388
PaqCI CACCTGC 1 cut(s) 199
PceI AGGCCT 1 cut(s) 372
PciI ACATGT 1 cut(s) 1318
PctI GAATGC 1 cut(s) 1230
PdmI GAANNNNTTC 1 cut(s) 999
PfeI GAWTC 3 cut(s) 557, 1161, 1182
PkrI GCNGC 3 cut(s) 136, 288, 1143
PleI GAGTC 2 cut(s) 411, 1046
PpsI GAGTC 2 cut(s) 411, 1046
PpuMI RGGWCCY 1 cut(s) 1279
PscI ACATGT 1 cut(s) 1318
PsiI TTATAA 1 cut(s) 1089
Psp1406I AACGTT 1 cut(s) 799
Psp5II RGGWCCY 1 cut(s) 1279
PspPI GGNCC 1 cut(s) 1279
PspPPI RGGWCCY 1 cut(s) 1279
RsaI GTAC 3 cut(s) 169, 241, 667
RsaNI GTAC 3 cut(s) 168, 240, 666
RseI CAYNNNNRTG 1 cut(s) 1235
SaqAI TTAA 6 cut(s) 99, 231, 452, 507, 770, 1040
SatI GCNGC 3 cut(s) 135, 287, 1142
Sau3AI GATC 3 cut(s) 614, 680, 937
Sau96I GGNCC 1 cut(s) 1279
ScaI AGTACT 2 cut(s) 169, 667
SchI GAGTC 2 cut(s) 412, 1046
SduI GDGCHC 2 cut(s) 270, 475
SfaNI GCATC 3 cut(s) 76, 932, 1294
SfcI CTRYAG 1 cut(s) 309
SinI GGWCC 1 cut(s) 1279
SmiI ATTTAAAT 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 1235
SmlI CTYRAG 2 cut(s) 649, 1054
SmoI CTYRAG 2 cut(s) 649, 1054
SseBI AGGCCT 1 cut(s) 372
SsiI CCGC 3 cut(s) 287, 314, 1025
SspMI CTAG 3 cut(s) 80, 374, 1324
StuI AGGCCT 1 cut(s) 372
StyI CCWWGG 1 cut(s) 363
SwaI ATTTAAAT 1 cut(s) 232
TaaI ACNGT 3 cut(s) 523, 711, 919
TaiI ACGT 7 cut(s) 295, 583, 594, 611, 677, 802, 1228
TaqI TCGA 2 cut(s) 331, 475
TatI WGTACW 2 cut(s) 167, 665
TauI GCSGC 1 cut(s) 289
TfiI GAWTC 3 cut(s) 557, 1161, 1182
Tru1I TTAA 6 cut(s) 99, 231, 452, 507, 770, 1040
Tru9I TTAA 6 cut(s) 99, 231, 452, 507, 770, 1040
TscAI CASTG 1 cut(s) 997
TseI GCWGC 2 cut(s) 134, 1141
TspDTI ATGAA 3 cut(s) 179, 287, 377
TspGWI ACGGA 1 cut(s) 1220
TspRI CASTG 1 cut(s) 997
VpaK11BI GGWCC 1 cut(s) 1279
XapI RAATTY 3 cut(s) 353, 478, 996
XceI RCATGY 1 cut(s) 1322
XcmI CCANNNNNNNNNTGG 1 cut(s) 511
XmnI GAANNNNTTC 1 cut(s) 999
XspI CTAG 3 cut(s) 80, 374, 1324
ZrmI AGTACT 2 cut(s) 169, 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.