FvH4_4g19920

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0008465
Physical Location & Seq
Forward (+)
23400006 .. 23404159
4154 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19920.t1

Sequence Viewer

Length: 1155 bp
ATGCTTCATGCATTGATGAATCTTCTCTCGCTGTGTTGGAAGCCATCCGGGCGCGGCGGCGGTGAGGGAGGAGGACTCGAGTCCATCGGAATCGTTGGCGCCAATTTGGGCGGCGGCGGAAGAGATGGAAAAGATAGCTTGCTTTGGTTTAGGGATATCGGGAAATACGCGTGGGGAGATTTCTCCATGGCTGTGGTTCAGGCCAATCAGGTGCTTGAGGACCAGGGCCAGATCGAGTCCGGACCCTTTGGGACCTTCGTCGGCGTTTACGACGGCCACGGTGGCCCCGAGGCCGCTCACTACGTCTGTGATAATCTATTTAGACAGTTTCAAGCAGTATCAGCGGAGACGGAGGGTGTTGTGACAGCGGATACCATTCAAGATGCTTTTCGTCGGACAGAGGAAGGATTTACGGCTCTTGTTTCTGAGTTGTGGAGTACTAGACCCAATTTAGCGACTGTTGGAACATGCTGTCTTGTTGGAGTGATATGTCGGGGGACGCTATTTGTGGCAAGTCTTGGAGATTCCCGTCTTGTTTTGGGGAAGAAAGTGGGCAATACTGGGGAAGTTGCTGCTATTCAGCTATCCACCGAACACAATGCGAATCTTGAGGAGATTCGGTATGAGCTGAAAGAGCAGCACTCACATGATCCTCAAATTGTCGTTTTAAAGCATGGAGTTTGGAGAGTAAAAGGCATCATCCAGGTTTCTAGATCTATCGGTGATGTATATATGAAACATGCAGAGTTTAACAGGGAGCCAATTGCTGCAAAGTTCCGGCTTCCTGAACCAATGAACATGCCTATCATGTCTGCCACTCCAACTATTCTTTCTCATGCTCTGCATCCAAATGATTCTTTTCTTATCTTTGCATCTGATGGTCTATGGGAACACTTGAGTAATGAAAAAGCTGTTGAGATTGTCCACAAGCATCCTCATGCAGGAAGTGCCAAAAGACTTGTTAAGACGGCCCTCCAAGAAGCTGCAAGAAAACGAGAAATGCGTTACTCAGATCTTCGGAAAATAGACAAGAAGGTGCGGCGGCATTTTCATGATGATATAACCGTTATTGTTTTATTCTTGAACCATGACCTAATCTCCAGAGGCACAGCGCAAGATCCCCCAATCTCAATAAGAAGTGGTGTTGATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

385

Amino Acids

42.17

Weight (kDa)

6.52

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 85 - 330 2.5e-33 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 98
AccBSI CCGCTC 1 cut(s) 296
AccII CGCG 2 cut(s) 54, 170
AccIII TCCGGA 1 cut(s) 239
AclWI GGATC 2 cut(s) 644, 1112
AcoI YGGCCR 1 cut(s) 274
AcyI GRCGYC 1 cut(s) 99
AfaI GTAC 1 cut(s) 439
AfiI CCNNNNNNNGG 1 cut(s) 941
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 3 cut(s) 332, 380, 1084
AjnI CCWGG 2 cut(s) 222, 702
AjuI GAANNNNNNNTTGG 2 cut(s) 814, 846
AluBI AGCT 5 cut(s) 138, 583, 628, 911, 983
AluI AGCT 5 cut(s) 138, 583, 628, 911, 983
Alw26I GTCTC 1 cut(s) 341
AlwI GGATC 2 cut(s) 644, 1112
Ama87I CYCGRG 2 cut(s) 77, 287
Aor13HI TCCGGA 1 cut(s) 239
AoxI GGCC 6 cut(s) 201, 226, 274, 283, 291, 969
ApeKI GCWGC 4 cut(s) 572, 637, 767, 983
AspLEI GCGC 3 cut(s) 54, 101, 1114
AspS9I GGNCC 6 cut(s) 220, 226, 242, 252, 284, 970
AsuC2I CCSGG 1 cut(s) 49
AsuHPI GGTGA 2 cut(s) 74, 734
AvaI CYCGRG 2 cut(s) 77, 287
AvaII GGWCC 3 cut(s) 220, 242, 252
BanI GGYRCC 1 cut(s) 98
BbvI GCAGC 4 cut(s) 559, 649, 754, 970
BccI CCATC 4 cut(s) 52, 92, 119, 872
BceAI ACGGC 3 cut(s) 289, 429, 984
BcgI CGANNNNNNTGC 2 cut(s) 581, 615
BciT130I CCWGG 2 cut(s) 224, 704
BciVI GTATCC 1 cut(s) 364
BclI TGATCA 1 cut(s) 1147
BcnI CCSGG 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 341
BfaI CTAG 2 cut(s) 441, 711
BfoI RGCGCY 1 cut(s) 102
BfuI GTATCC 1 cut(s) 364
BglI GCCNNNNNGGC 2 cut(s) 49, 282
BglII AGATCT 2 cut(s) 713, 1012
BmcAI AGTACT 1 cut(s) 439
Bme1390I CCNGG 3 cut(s) 49, 224, 704
Bme18I GGWCC 3 cut(s) 220, 242, 252
BmeT110I CYCGRG 2 cut(s) 77, 287
BmgT120I GGNCC 6 cut(s) 220, 226, 242, 252, 284, 970
BmiI GGNNCC 5 cut(s) 100, 244, 253, 286, 759
BmrFI CCNGG 3 cut(s) 49, 224, 704
BmrI ACTGGG 1 cut(s) 570
BmsI GCATC 5 cut(s) 373, 705, 853, 881, 940
BmuI ACTGGG 1 cut(s) 570
BoxI GACNNNNGTC 2 cut(s) 79, 257
BplI GAGNNNNNCTC 4 cut(s) 60, 92, 626, 658
BpmI CTGGAG 1 cut(s) 1084
BpuEI CTTGAG 3 cut(s) 236, 629, 916
BpuMI CCSGG 1 cut(s) 49
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 4 cut(s) 186, 223, 277, 288
BsaWI WCCGGW 1 cut(s) 239
BsaXI ACNNNNNCTCC 4 cut(s) 605, 635, 1082, 1112
Bsc4I CCNNNNNNNGG 1 cut(s) 941
Bse1I ACTGG 1 cut(s) 565
BseAI TCCGGA 1 cut(s) 239
BseBI CCWGG 2 cut(s) 224, 704
BseDI CCNNGG 4 cut(s) 186, 223, 277, 288
BseGI GGATG 4 cut(s) 44, 699, 844, 931
BseLI CCNNNNNNNGG 1 cut(s) 941
BseMII CTCAG 2 cut(s) 417, 1023
BseNI ACTGG 1 cut(s) 565
BseRI GAGGAG 2 cut(s) 84, 626
BseXI GCAGC 4 cut(s) 559, 649, 754, 970
Bsh1236I CGCG 2 cut(s) 54, 170
BshFI GGCC 6 cut(s) 203, 228, 276, 285, 293, 971
BshNI GGYRCC 1 cut(s) 98
BsiHKCI CYCGRG 2 cut(s) 77, 287
BsiSI CCGG 3 cut(s) 48, 240, 778
BslFI GGGAC 2 cut(s) 265, 511
BslI CCNNNNNNNGG 1 cut(s) 941
BsmAI GTCTC 1 cut(s) 341
BsmBI CGTCTC 1 cut(s) 341
BsmFI GGGAC 2 cut(s) 265, 511
BsnI GGCC 6 cut(s) 203, 228, 276, 285, 293, 971
BsoBI CYCGRG 2 cut(s) 77, 287
Bsp13I TCCGGA 1 cut(s) 239
Bsp143I GATC 6 cut(s) 231, 649, 713, 1012, 1117, 1147
Bsp19I CCATGG 1 cut(s) 186
BspANI GGCC 6 cut(s) 203, 228, 276, 285, 293, 971
BspCNI CTCAG 2 cut(s) 418, 1022
BspEI TCCGGA 1 cut(s) 239
BspFNI CGCG 2 cut(s) 54, 170
BspHI TCATGA 1 cut(s) 1051
BspLI GGNNCC 5 cut(s) 100, 244, 253, 286, 759
BspPI GGATC 2 cut(s) 644, 1112
BspT107I GGYRCC 1 cut(s) 98
BsrBI CCGCTC 1 cut(s) 296
BsrI ACTGG 1 cut(s) 565
BssECI CCNNGG 4 cut(s) 186, 223, 277, 288
BssMI GATC 6 cut(s) 231, 649, 713, 1012, 1117, 1147
BssNI GRCGYC 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 2 cut(s) 224, 704
Bst4CI ACNGT 4 cut(s) 281, 327, 460, 1066
Bst6I CTCTTC 1 cut(s) 115
BstACI GRCGYC 1 cut(s) 99
BstAPI GCANNNNNTGC 1 cut(s) 947
BstC8I GCNNGC 1 cut(s) 140
BstDEI CTNAG 2 cut(s) 426, 1009
BstDSI CCRYGG 2 cut(s) 186, 277
BstENI CCTNNNNNAGG 1 cut(s) 939
BstF5I GGATG 4 cut(s) 44, 699, 844, 931
BstFNI CGCG 2 cut(s) 54, 170
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 3 cut(s) 54, 101, 1114
BstKTI GATC 6 cut(s) 234, 652, 716, 1015, 1120, 1150
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 6 cut(s) 231, 649, 713, 1012, 1117, 1147
BstMWI GCNNNNNNNGC 5 cut(s) 49, 282, 341, 634, 947
BstNI CCWGG 2 cut(s) 224, 704
BstNSI RCATGY 3 cut(s) 471, 743, 802
BstPAI GACNNNNGTC 2 cut(s) 79, 257
BstSCI CCNGG 3 cut(s) 47, 222, 702
BstUI CGCG 2 cut(s) 54, 170
BstV1I GCAGC 4 cut(s) 559, 649, 754, 970
BstX2I RGATCY 3 cut(s) 713, 1012, 1117
BstXI CCANNNNNNTGG 1 cut(s) 193
BstYI RGATCY 3 cut(s) 713, 1012, 1117
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 6 cut(s) 203, 228, 276, 285, 293, 971
BtgI CCRYGG 2 cut(s) 186, 277
BtsCI GGATG 4 cut(s) 44, 699, 844, 931
Cac8I GCNNGC 1 cut(s) 140
CciI TCATGA 1 cut(s) 1051
CfoI GCGC 3 cut(s) 54, 101, 1114
Cfr13I GGNCC 6 cut(s) 220, 226, 242, 252, 284, 970
CseI GACGC 1 cut(s) 508
Csp6I GTAC 1 cut(s) 438
CviQI GTAC 1 cut(s) 438
DdeI CTNAG 2 cut(s) 426, 1009
DinI GGCGCC 1 cut(s) 100
DpnI GATC 6 cut(s) 233, 651, 715, 1014, 1119, 1149
DpnII GATC 6 cut(s) 231, 649, 713, 1012, 1117, 1147
DraI TTTAAA 1 cut(s) 669
EaeI YGGCCR 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
EciI GGCGGA 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 186
Eco32I GATATC 1 cut(s) 157
Eco47I GGWCC 3 cut(s) 220, 242, 252
Eco88I CYCGRG 2 cut(s) 77, 287
EcoNI CCTNNNNNAGG 1 cut(s) 939
EcoO109I RGGNCCY 1 cut(s) 252
EcoRII CCWGG 2 cut(s) 222, 702
EcoRV GATATC 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 186
EcoT22I ATGCAT 1 cut(s) 13
EgeI GGCGCC 1 cut(s) 100
EheI GGCGCC 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 186
Esp3I CGTCTC 1 cut(s) 341
FaqI GGGAC 2 cut(s) 265, 511
FbaI TGATCA 1 cut(s) 1147
FokI GGATG 4 cut(s) 31, 686, 831, 918
FspBI CTAG 2 cut(s) 441, 711
GlaI GCGC 3 cut(s) 53, 100, 1113
GsuI CTGGAG 1 cut(s) 1084
HaeII RGCGCY 1 cut(s) 102
HaeIII GGCC 6 cut(s) 203, 228, 276, 285, 293, 971
HapII CCGG 3 cut(s) 48, 240, 778
HgaI GACGC 1 cut(s) 508
HhaI GCGC 3 cut(s) 54, 101, 1114
Hin1I GRCGYC 1 cut(s) 99
Hin6I GCGC 3 cut(s) 52, 99, 1112
HinP1I GCGC 3 cut(s) 52, 99, 1112
HinfI GANTC 9 cut(s) 19, 75, 80, 90, 236, 524, 604, 616, 854
HpaII CCGG 3 cut(s) 48, 240, 778
HphI GGTGA 2 cut(s) 74, 734
Hpy166II GTNNAC 2 cut(s) 268, 925
Hpy188I TCNGA 6 cut(s) 89, 396, 427, 877, 1012, 1020
Hpy188III TCNNGA 9 cut(s) 160, 240, 380, 608, 711, 785, 1052, 1081, 1101
Hpy8I GTNNAC 2 cut(s) 268, 925
Hpy99I CGWCG 3 cut(s) 263, 275, 396
HpyAV CCTTC 3 cut(s) 265, 398, 1027
HpyCH4III ACNGT 4 cut(s) 281, 327, 460, 1066
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 7 cut(s) 11, 743, 770, 844, 872, 941, 986
HpyF10VI GCNNNNNNNGC 5 cut(s) 49, 282, 341, 634, 947
HpyF3I CTNAG 2 cut(s) 426, 1009
HpySE526I ACGT 1 cut(s) 303
Hsp92I GRCGYC 1 cut(s) 99
HspAI GCGC 3 cut(s) 52, 99, 1112
KasI GGCGCC 1 cut(s) 98
Kpn2I TCCGGA 1 cut(s) 239
Ksp22I TGATCA 1 cut(s) 1147
Kzo9I GATC 6 cut(s) 231, 649, 713, 1012, 1117, 1147
LmnI GCTCC 1 cut(s) 757
Lsp1109I GCAGC 4 cut(s) 559, 649, 754, 970
LweI GCATC 5 cut(s) 373, 705, 853, 881, 940
MaeI CTAG 2 cut(s) 441, 711
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 2 cut(s) 361, 1004
MalI GATC 6 cut(s) 233, 651, 715, 1014, 1119, 1149
MbiI CCGCTC 1 cut(s) 296
MboI GATC 6 cut(s) 231, 649, 713, 1012, 1117, 1147
MboII GAAGA 4 cut(s) 14, 132, 556, 1007
MfeI CAATTG 1 cut(s) 762
MflI RGATCY 3 cut(s) 713, 1012, 1117
MluCI AATT 4 cut(s) 103, 448, 657, 762
MluI ACGCGT 1 cut(s) 168
Mly113I GGCGCC 1 cut(s) 99
MlyI GAGTC 3 cut(s) 69, 89, 245
MmeI TCCRAC 5 cut(s) 17, 374, 442, 460, 845
Mph1103I ATGCAT 1 cut(s) 13
MroI TCCGGA 1 cut(s) 239
MseI TTAA 3 cut(s) 668, 750, 963
MslI CAYNNNNRTG 5 cut(s) 191, 645, 849, 936, 1050
MspA1I CMGCKG 2 cut(s) 344, 368
MspI CCGG 3 cut(s) 48, 240, 778
MspR9I CCNGG 3 cut(s) 49, 224, 704
MunI CAATTG 1 cut(s) 762
MvaI CCWGG 2 cut(s) 224, 704
MvnI CGCG 2 cut(s) 54, 170
MwoI GCNNNNNNNGC 5 cut(s) 49, 282, 341, 634, 947
NarI GGCGCC 1 cut(s) 99
NciI CCSGG 1 cut(s) 49
NcoI CCATGG 1 cut(s) 186
NdeII GATC 6 cut(s) 231, 649, 713, 1012, 1117, 1147
NlaIV GGNNCC 5 cut(s) 100, 244, 253, 286, 759
NmuCI GTSAC 1 cut(s) 361
NsiI ATGCAT 1 cut(s) 13
NspI RCATGY 3 cut(s) 471, 743, 802
PaeR7I CTCGAG 1 cut(s) 77
PagI TCATGA 1 cut(s) 1051
PcsI WCGNNNNNNNCGW 3 cut(s) 267, 285, 1000
PfeI GAWTC 6 cut(s) 19, 90, 524, 604, 616, 854
PleI GAGTC 3 cut(s) 69, 88, 244
PluTI GGCGCC 1 cut(s) 102
PpsI GAGTC 3 cut(s) 69, 88, 244
PpuMI RGGWCCY 1 cut(s) 252
PshAI GACNNNNGTC 2 cut(s) 79, 257
Psp5II RGGWCCY 1 cut(s) 252
Psp6I CCWGG 2 cut(s) 222, 702
PspGI CCWGG 2 cut(s) 222, 702
PspN4I GGNNCC 5 cut(s) 100, 244, 253, 286, 759
PspPI GGNCC 6 cut(s) 220, 226, 242, 252, 284, 970
PspPPI RGGWCCY 1 cut(s) 252
PspXI VCTCGAGB 1 cut(s) 77
PsuI RGATCY 3 cut(s) 713, 1012, 1117
RsaI GTAC 1 cut(s) 439
RsaNI GTAC 1 cut(s) 438
RseI CAYNNNNRTG 5 cut(s) 191, 645, 849, 936, 1050
SaqAI TTAA 3 cut(s) 668, 750, 963
Sau3AI GATC 6 cut(s) 231, 649, 713, 1012, 1117, 1147
Sau96I GGNCC 6 cut(s) 220, 226, 242, 252, 284, 970
ScaI AGTACT 1 cut(s) 439
SchI GAGTC 3 cut(s) 69, 89, 245
ScrFI CCNGG 3 cut(s) 49, 224, 704
SfaNI GCATC 5 cut(s) 373, 705, 853, 881, 940
SfiI GGCCNNNNNGGCC 1 cut(s) 282
SfoI GGCGCC 1 cut(s) 100
Sfr274I CTCGAG 1 cut(s) 77
SinI GGWCC 3 cut(s) 220, 242, 252
SlaI CTCGAG 1 cut(s) 77
SmiMI CAYNNNNRTG 5 cut(s) 191, 645, 849, 936, 1050
SmlI CTYRAG 4 cut(s) 77, 215, 608, 895
SmoI CTYRAG 4 cut(s) 77, 215, 608, 895
Sse9I AATT 4 cut(s) 103, 448, 657, 762
SspDI GGCGCC 1 cut(s) 98
SspMI CTAG 2 cut(s) 441, 711
StyD4I CCNGG 3 cut(s) 47, 222, 702
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 4 cut(s) 281, 327, 460, 1066
TaiI ACGT 1 cut(s) 306
TaqI TCGA 2 cut(s) 78, 234
TasI AATT 4 cut(s) 103, 448, 657, 762
TatI WGTACW 1 cut(s) 437
TauI GCSGC 7 cut(s) 57, 60, 114, 117, 296, 1042, 1045
TfiI GAWTC 6 cut(s) 19, 90, 524, 604, 616, 854
Tru1I TTAA 3 cut(s) 668, 750, 963
Tru9I TTAA 3 cut(s) 668, 750, 963
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 4 cut(s) 572, 637, 767, 983
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 5 cut(s) 32, 749, 809, 918, 1040
TspGWI ACGGA 1 cut(s) 365
VpaK11BI GGWCC 3 cut(s) 220, 242, 252
XagI CCTNNNNNAGG 1 cut(s) 939
XbaI TCTAGA 1 cut(s) 710
XceI RCATGY 3 cut(s) 471, 743, 802
XhoI CTCGAG 1 cut(s) 77
XspI CTAG 2 cut(s) 441, 711
ZrmI AGTACT 1 cut(s) 439
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.