Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003989

Physical Location & Seq

Genomic Coordinates Forward (+)

6089381 .. 6091231

Gene Structure 1851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G17790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAATTCTGGTCGTCGATCGTTAATGTCCGCCACGGCGAGTCTGAGTTTGCTGTTGTGTATCTTCACCACCTTCGTCGTGGTGTCGAACGGTGAGCTTCAGAGATTTATAGAGCCGGCTAAAAGCGACGGTTCCGTTAGTTTTATAGTCATCGGAGATTGGGGTCGTCGTGGCTCCTTCAATCAGTCTCTCGTTGCTTATCAGATGGGAAAAATTGGAGAGAAGATTGACTTAGATTTCGTGGTGTCTACGGGAGATAACTTCTACGACAATGGATTGTTTAGTGAACATGATCCAAACTTCGAACAATCTTTCTCTAACATCTACACTGCTCCAAGTCTTCAGAAACAGTGGTACAGTGTTTTGGGAAACCATGACTATAGAGGTGACGCAGAAGCTCAGCTGAGTTCTGTTCTCCGGGAAATCGACAGCCGTTGGATTTGTCTTCGATCATTTGTCGTTGATGCAGAGTTGGTAGAGATGTTCTTTGTTGACACGACTCCTTTCGTGAAAGAATACTACACAGAAGCAGATGGTCACTCATATGATTGGCGCGCAGTTCCATCTCGCAACTCTTATGTCAAAGCTCTTCTCCGTGATCTTGAAGTTTCCTTAAAGAGTTCTAAAGCAAGATGGAAGATTGTTGTTGGTCACCATGCAATGAGAAGCATTGGACATCATGGAGATACTAAAGAGCTCAACGAAGAGCTTCTTCCGATTCTTAAAGAGAACGGTGTTGATCTCTACATGAATGGACATGATCATTGTCTTCAACATATGAGTGATGAAGACAGTCCTATTCAGTTTCTAACTAGTGGTGCTGGATCCAAGGCTTGGAGAGGAGATATTAACCCAGTGACCATCAATCCCAAGCTACTGAAATTCTATTATGATGGTCAAGGATTCATGTCTGCTCGGTTCACTCACTCGGACGCAGAGATCGTCTTCTACGATGTCTTTGGTGAGATTTTGCACAAATGGGTCACTTCTAAACAACTTCTTCATTCCTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005623 GO:0006793 GO:0006796 GO:0006873 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009986 GO:0009987 GO:0010035 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042221 GO:0042493 GO:0042542 GO:0042578 GO:0042592 GO:0044237 GO:0044464 GO:0046677 GO:0048878 GO:0050801 GO:0050896 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

338

Amino Acids

38.3

Weight (kDa)

5.61

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	48 - 256	3.1e-20	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17790
fragaria_vesca	FvH4_4g33010 FvH4_5g17770 FvH4_5g17770
malus_domestica	MD06G1233500.v1.1 MD14G1240300.v1.1 MD16G1013500.v1.1
prunus_persica	Prupe.1G337700_v2.0.a1 Prupe.5G237900_v2.0.a1
pyrus_communis	pycom06g20810 pycom14g20180 pycom16g01260
rosa_chinensis	RchiOBHm_Chr4g0442041 RchiOBHm_Chr7g0177841
rosa_laevigata	RLG00000005498 RLG00000006049
rosa_multiflora	Rmu_sc0002501.1_g000015 Rmu_sc0006214.1_g000006
rosa_roxburghii	Rroxscaffold_3G00275510 Rroxscaffold_5G00382960
rosa_rugosa	Rorug04G0338300 Rorug04G0338300 Rorug06G0410000
rosa_samantha	Rh4AG389900 Rh4BG403300 Rh4CG418400 Rh4DG396500 Rh7AG009500 Rh7BG009600 Rh7CG009700 Rh7DG009600
rosa_wichuraiana	Rw4G033690 Rw7G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	834
AccI	GTMKAC	1 cut(s)	248
AccII	CGCG	1 cut(s)	555
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	3 cut(s)	287, 819, 832
AcsI	RAATTY	2 cut(s)	4, 881
AcuI	CTGAAG	2 cut(s)	83, 326
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	834
AgsI	TTSAA	3 cut(s)	181, 605, 773
AhlI	ACTAGT	1 cut(s)	812
AluBI	AGCT	7 cut(s)	97, 398, 403, 587, 697, 709, 874
AluI	AGCT	7 cut(s)	97, 398, 403, 587, 697, 709, 874
Alw21I	GWGCWC	1 cut(s)	699
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	3 cut(s)	287, 819, 832
ApoI	RAATTY	2 cut(s)	4, 881
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
Asp700I	GAANNNNTTC	1 cut(s)	708
AspLEI	GCGC	2 cut(s)	555, 557
AsuC2I	CCSGG	1 cut(s)	419
AsuHPI	GGTGA	5 cut(s)	58, 104, 398, 644, 974
AsuII	TTCGAA	1 cut(s)	303
BamHI	GGATCC	1 cut(s)	824
BanII	GRGCYC	1 cut(s)	699
BbsI	GAAGAC	5 cut(s)	332, 437, 761, 795, 937
Bbv12I	GWGCWC	1 cut(s)	699
BccI	CCATC	6 cut(s)	199, 527, 571, 627, 869, 887
BceAI	ACGGC	2 cut(s)	51, 417
BclI	TGATCA	1 cut(s)	760
BcnI	CCSGG	1 cut(s)	419
BcoDI	GTCTC	1 cut(s)	192
BcuI	ACTAGT	1 cut(s)	812
BfaI	CTAG	1 cut(s)	813
BfmI	CTRYAG	1 cut(s)	379
BlpI	GCTNAGC	1 cut(s)	399
Bme1390I	CCNGG	1 cut(s)	419
BmiI	GGNNCC	3 cut(s)	133, 175, 826
BmrFI	CCNGG	1 cut(s)	419
BmrI	ACTGGG	1 cut(s)	848
BmsI	GCATC	1 cut(s)	454
BmuI	ACTGGG	1 cut(s)	848
BpiI	GAAGAC	5 cut(s)	332, 437, 761, 795, 937
Bpu1102I	GCTNAGC	1 cut(s)	399
Bpu14I	TTCGAA	1 cut(s)	303
BpuMI	CCSGG	1 cut(s)	419
BsaJI	CCNNGG	2 cut(s)	33, 828
Bsc4I	CCNNNNNNNGG	1 cut(s)	834
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	854
Bse3DI	GCAATG	1 cut(s)	666
BseDI	CCNNGG	2 cut(s)	33, 828
BseLI	CCNNNNNNNGG	1 cut(s)	834
BseMI	GCAATG	1 cut(s)	666
BseMII	CTCAG	3 cut(s)	35, 395, 413
BseNI	ACTGG	1 cut(s)	854
BsePI	GCGCGC	1 cut(s)	553
BseRI	GAGGAG	1 cut(s)	855
Bsh1236I	CGCG	1 cut(s)	555
Bsh1285I	CGRYCG	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	699
BsiSI	CCGG	2 cut(s)	116, 418
BslI	CCNNNNNNNGG	1 cut(s)	834
BsmAI	GTCTC	1 cut(s)	192
Bsp119I	TTCGAA	1 cut(s)	303
Bsp1286I	GDGCHC	1 cut(s)	699
Bsp143I	GATC	8 cut(s)	17, 292, 449, 598, 739, 760, 824, 939
Bsp1720I	GCTNAGC	1 cut(s)	399
BspACI	CCGC	1 cut(s)	30
BspCNI	CTCAG	3 cut(s)	36, 396, 412
BspFNI	CGCG	1 cut(s)	555
BspLI	GGNNCC	3 cut(s)	133, 175, 826
BspPI	GGATC	3 cut(s)	287, 819, 832
BspQI	GCTCTTC	2 cut(s)	594, 699
BspT104I	TTCGAA	1 cut(s)	303
BsrDI	GCAATG	1 cut(s)	666
BsrFI	RCCGGY	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	854
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	2 cut(s)	33, 828
BssHII	GCGCGC	1 cut(s)	553
BssMI	GATC	8 cut(s)	17, 292, 449, 598, 739, 760, 824, 939
BssT1I	CCWWGG	1 cut(s)	828
Bst4CI	ACNGT	6 cut(s)	92, 131, 351, 359, 734, 794
Bst6I	CTCTTC	2 cut(s)	594, 699
BstBI	TTCGAA	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	117, 555
BstDEI	CTNAG	4 cut(s)	44, 232, 399, 404
BstDSI	CCRYGG	1 cut(s)	33
BstEII	GGTNACC	1 cut(s)	650
BstFNI	CGCG	1 cut(s)	555
BstHHI	GCGC	2 cut(s)	555, 557
BstKTI	GATC	8 cut(s)	20, 295, 452, 601, 742, 763, 827, 942
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	8 cut(s)	17, 292, 449, 598, 739, 760, 824, 939
BstMCI	CGRYCG	1 cut(s)	20
BstPI	GGTNACC	1 cut(s)	650
BstSCI	CCNGG	1 cut(s)	417
BstSFI	CTRYAG	1 cut(s)	379
BstUI	CGCG	1 cut(s)	555
BstV2I	GAAGAC	5 cut(s)	332, 437, 761, 795, 937
BstX2I	RGATCY	1 cut(s)	824
BstYI	RGATCY	1 cut(s)	824
BtgI	CCRYGG	1 cut(s)	33
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	4 cut(s)	327, 356, 364, 861
Cac8I	GCNNGC	2 cut(s)	117, 555
CfoI	GCGC	2 cut(s)	555, 557
Cfr10I	RCCGGY	1 cut(s)	115
CseI	GACGC	2 cut(s)	398, 941
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	7 cut(s)	290, 374, 656, 680, 748, 758, 907
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	4 cut(s)	44, 232, 399, 404
DpnI	GATC	8 cut(s)	19, 294, 451, 600, 741, 762, 826, 941
DpnII	GATC	8 cut(s)	17, 292, 449, 598, 739, 760, 824, 939
Eam1104I	CTCTTC	2 cut(s)	594, 699
EarI	CTCTTC	2 cut(s)	594, 699
EciI	GGCGGA	1 cut(s)	19
Ecl136II	GAGCTC	1 cut(s)	697
Eco130I	CCWWGG	1 cut(s)	828
Eco24I	GRGCYC	1 cut(s)	699
Eco53kI	GAGCTC	1 cut(s)	697
Eco57I	CTGAAG	2 cut(s)	83, 326
Eco91I	GGTNACC	1 cut(s)	650
EcoICRI	GAGCTC	1 cut(s)	697
EcoO65I	GGTNACC	1 cut(s)	650
EcoRI	GAATTC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	828
EcoT38I	GRGCYC	1 cut(s)	699
ErhI	CCWWGG	1 cut(s)	828
FaeI	CATG	7 cut(s)	293, 377, 659, 683, 751, 761, 910
FalI	AAGNNNNNCTT	4 cut(s)	215, 247, 696, 728
FatI	CATG	7 cut(s)	289, 373, 655, 679, 747, 757, 906
FauNDI	CATATG	2 cut(s)	544, 777
FbaI	TGATCA	1 cut(s)	760
FblI	GTMKAC	1 cut(s)	248
FriOI	GRGCYC	1 cut(s)	699
FspBI	CTAG	1 cut(s)	813
GlaI	GCGC	2 cut(s)	554, 556
HapII	CCGG	2 cut(s)	116, 418
HgaI	GACGC	2 cut(s)	398, 941
HhaI	GCGC	2 cut(s)	555, 557
Hin1II	CATG	7 cut(s)	293, 377, 659, 683, 751, 761, 910
Hin6I	GCGC	2 cut(s)	553, 555
HinP1I	GCGC	2 cut(s)	553, 555
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HinfI	GANTC	4 cut(s)	40, 499, 718, 903
HpaII	CCGG	2 cut(s)	116, 418
HphI	GGTGA	5 cut(s)	58, 104, 398, 644, 974
Hpy166II	GTNNAC	4 cut(s)	249, 287, 493, 921
Hpy188I	TCNGA	7 cut(s)	45, 102, 155, 204, 345, 717, 931
Hpy188III	TCNNGA	2 cut(s)	508, 602
Hpy8I	GTNNAC	4 cut(s)	249, 287, 493, 921
Hpy99I	CGWCG	4 cut(s)	18, 80, 131, 171
HpyAV	CCTTC	2 cut(s)	82, 187
HpyCH4III	ACNGT	6 cut(s)	92, 131, 351, 359, 734, 794
HpyCH4V	TGCA	3 cut(s)	467, 659, 973
HpyF3I	CTNAG	4 cut(s)	44, 232, 399, 404
Hsp92II	CATG	7 cut(s)	293, 377, 659, 683, 751, 761, 910
HspAI	GCGC	2 cut(s)	553, 555
KroI	GCCGGC	1 cut(s)	115
KroNI	GCCGGC	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	760
Kzo9I	GATC	8 cut(s)	17, 292, 449, 598, 739, 760, 824, 939
LguI	GCTCTTC	2 cut(s)	594, 699
LmnI	GCTCC	2 cut(s)	179, 337
LpnPI	CCDG	4 cut(s)	129, 431, 807, 867
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	1 cut(s)	813
MaeIII	GTNAC	5 cut(s)	386, 536, 650, 856, 982
MalI	GATC	8 cut(s)	19, 294, 451, 600, 741, 762, 826, 941
MboI	GATC	8 cut(s)	17, 292, 449, 598, 739, 760, 824, 939
MflI	RGATCY	1 cut(s)	824
MhlI	GDGCHC	1 cut(s)	699
MluCI	AATT	3 cut(s)	4, 213, 881
MlyI	GAGTC	2 cut(s)	49, 493
MmeI	TCCRAC	1 cut(s)	416
MnlI	CCTC	2 cut(s)	377, 833
MroNI	GCCGGC	1 cut(s)	115
MroXI	GAANNNNTTC	1 cut(s)	708
MseI	TTAA	4 cut(s)	23, 614, 723, 849
MslI	CAYNNNNRTG	2 cut(s)	543, 780
MspA1I	CMGCKG	1 cut(s)	403
MspI	CCGG	2 cut(s)	116, 418
MspR9I	CCNGG	1 cut(s)	419
MvnI	CGCG	1 cut(s)	555
NaeI	GCCGGC	1 cut(s)	117
NciI	CCSGG	1 cut(s)	419
NdeI	CATATG	2 cut(s)	544, 777
NdeII	GATC	8 cut(s)	17, 292, 449, 598, 739, 760, 824, 939
NgoMIV	GCCGGC	1 cut(s)	115
NlaIII	CATG	7 cut(s)	293, 377, 659, 683, 751, 761, 910
NlaIV	GGNNCC	3 cut(s)	133, 175, 826
NmuCI	GTSAC	5 cut(s)	386, 536, 650, 856, 982
NspV	TTCGAA	1 cut(s)	303
PauI	GCGCGC	1 cut(s)	553
PciSI	GCTCTTC	2 cut(s)	594, 699
PcsI	WCGNNNNNNNCGW	2 cut(s)	939, 948
PdiI	GCCGGC	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	708
PfeI	GAWTC	2 cut(s)	718, 903
PflMI	CCANNNNNTGG	1 cut(s)	834
PfoI	TCCNGGA	1 cut(s)	417
Ple19I	CGATCG	1 cut(s)	20
PleI	GAGTC	2 cut(s)	48, 493
PpsI	GAGTC	2 cut(s)	48, 493
Psp124BI	GAGCTC	1 cut(s)	699
PspEI	GGTNACC	1 cut(s)	650
PspN4I	GGNNCC	3 cut(s)	133, 175, 826
PsuI	RGATCY	1 cut(s)	824
PteI	GCGCGC	1 cut(s)	553
PvuI	CGATCG	1 cut(s)	20
PvuII	CAGCTG	1 cut(s)	403
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
RseI	CAYNNNNRTG	2 cut(s)	543, 780
SacI	GAGCTC	1 cut(s)	699
SapI	GCTCTTC	2 cut(s)	594, 699
SaqAI	TTAA	4 cut(s)	23, 614, 723, 849
Sau3AI	GATC	8 cut(s)	17, 292, 449, 598, 739, 760, 824, 939
SchI	GAGTC	2 cut(s)	49, 493
ScrFI	CCNGG	1 cut(s)	419
SduI	GDGCHC	1 cut(s)	699
SetI	ASST	9 cut(s)	74, 99, 388, 400, 405, 589, 699, 711, 876
SfaNI	GCATC	1 cut(s)	454
SfcI	CTRYAG	1 cut(s)	379
SfuI	TTCGAA	1 cut(s)	303
SmiMI	CAYNNNNRTG	2 cut(s)	543, 780
SpeI	ACTAGT	1 cut(s)	812
Sse9I	AATT	3 cut(s)	4, 213, 881
SsiI	CCGC	1 cut(s)	30
SspMI	CTAG	1 cut(s)	813
SstI	GAGCTC	1 cut(s)	699
StyD4I	CCNGG	1 cut(s)	417
StyI	CCWWGG	1 cut(s)	828
TaaI	ACNGT	6 cut(s)	92, 131, 351, 359, 734, 794
TaqI	TCGA	5 cut(s)	16, 86, 303, 426, 448
TasI	AATT	3 cut(s)	4, 213, 881
TfiI	GAWTC	2 cut(s)	718, 903
Tru1I	TTAA	4 cut(s)	23, 614, 723, 849
Tru9I	TTAA	4 cut(s)	23, 614, 723, 849
TscAI	CASTG	4 cut(s)	334, 356, 364, 861
TseFI	GTSAC	5 cut(s)	386, 536, 650, 856, 982
Tsp45I	GTSAC	5 cut(s)	386, 536, 650, 856, 982
TspDTI	ATGAA	5 cut(s)	17, 764, 801, 895, 992
TspGWI	ACGGA	2 cut(s)	124, 584
TspRI	CASTG	4 cut(s)	334, 356, 364, 861
Van91I	CCANNNNNTGG	1 cut(s)	834
XapI	RAATTY	2 cut(s)	4, 881
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XmiI	GTMKAC	1 cut(s)	248
XmnI	GAANNNNTTC	1 cut(s)	708
XspI	CTAG	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.