Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003989

Physical Location & Seq

Genomic Coordinates Reverse (-)

10170547 .. 10173024

Gene Structure 2478 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g17770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCCCTAAATATTCCTAGTAAGAAATCCAGGACCTTGTGCTTTTTCTTGGTCCTTATTATTTGTATTGTAACTACATTAGCAGAGCTGCAGAGATTCGAACACCCCACAAAAGAAGATGGATCACTTAGTTTTCTGGTGCTTGGTGACTGGGGAAGAAGAGGAGATTTTAACCAGTCAGAAGTTGCCTTTCAGATGGGAAGGGTTGGAGAGAAATTTGACATAGATTTTGTGGTTTCCACCGGAGACAACTTTTATGACAATGGGTTGAGCAGTGAACACGATACAGCATTTGAGGAGTCATTTACCAACATCTATACACAAACGAGTCTGCAAAAGCAATGGTACAGCATTTTAGGCAACCATGATTATAGGGGTGATGCAGAGGCTCAGCTCAGCCCCCAGCTAAGGAAGATTGACAGAAGATGGCTTTGCTTAAGGTCTTTCATTGTCGACGCAGAATTAGCAGAGATTTTGTTTGTAGACACCACTCCTTTTGTCGATATGTACTTCACAAGCACAGAGGACCATACTTATGACTGGCGAGGAATTCCTTCTCGCAAGGCTTATATTCAAACCCTGTTAAAGGATGTTGAGTTAGCACTGAAAAAGTCATCTGCAAAGTGGAAGATAGTTGTTGGACACCATGCAATCAGAAGTATTGGGCATCATGGTGATACACAGGAGCTTATAAATCACCTTCTCCCAATTCTTCAGGCCAATGATGTGGACTTCTACATGAATGGGCACGATCATTGCCTAGAACACATCAGTGACAACAAAAGCGGAATACAGTTTCTGACGAGTGGAGCAGGATCCAAAGCATGGAGAGGAGACATGAAGAATGAGGAGGCTTTGAACAAACAAGGCCAACTGGTGAACTTCTTCTATGATGGTCAAGGCTTCATGTCTGTGCAGTTGAATCCCACTCAAGCAGAGATCGCTTTCTTTGATGTCTTTGGCAACGTCATACATTCATGGACTGCTTTCAAGCTGCTTCACCCATCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005623 GO:0006793 GO:0006796 GO:0006873 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009986 GO:0009987 GO:0010035 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042221 GO:0042493 GO:0042542 GO:0042578 GO:0042592 GO:0044237 GO:0044464 GO:0046677 GO:0048878 GO:0050801 GO:0050896 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

338

Amino Acids

38.44

Weight (kDa)

5.57

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	44 - 253	5.9e-20	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17790
fragaria_vesca	FvH4_4g33010 FvH4_5g17770 FvH4_5g17770
malus_domestica	MD06G1233500.v1.1 MD14G1240300.v1.1 MD16G1013500.v1.1
prunus_persica	Prupe.1G337700_v2.0.a1 Prupe.5G237900_v2.0.a1
pyrus_communis	pycom06g20810 pycom14g20180 pycom16g01260
rosa_chinensis	RchiOBHm_Chr4g0442041 RchiOBHm_Chr7g0177841
rosa_laevigata	RLG00000005498 RLG00000006049
rosa_multiflora	Rmu_sc0002501.1_g000015 Rmu_sc0006214.1_g000006
rosa_roxburghii	Rroxscaffold_3G00275510 Rroxscaffold_5G00382960
rosa_rugosa	Rorug04G0338300 Rorug04G0338300 Rorug06G0410000
rosa_samantha	Rh4AG389900 Rh4BG403300 Rh4CG418400 Rh4DG396500 Rh7AG009500 Rh7BG009600 Rh7CG009700 Rh7DG009600
rosa_wichuraiana	Rw4G033690 Rw7G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	692
AccB7I	CCANNNNNTGG	1 cut(s)	825
AccI	GTMKAC	2 cut(s)	453, 483
AciI	CCGC	1 cut(s)	786
AclWI	GGATC	3 cut(s)	130, 810, 823
AcsI	RAATTY	2 cut(s)	215, 549
AcuI	CTGAAG	1 cut(s)	698
AfaI	GTAC	2 cut(s)	347, 509
AfiI	CCNNNNNNNGG	3 cut(s)	408, 586, 825
AflII	CTTAAG	1 cut(s)	436
AgsI	TTSAA	4 cut(s)	575, 859, 922, 991
AjnI	CCWGG	1 cut(s)	29
AleI	CACNNNNGTG	1 cut(s)	771
AluBI	AGCT	5 cut(s)	88, 394, 406, 688, 994
AluI	AGCT	5 cut(s)	88, 394, 406, 688, 994
Alw26I	GTCTC	2 cut(s)	240, 828
AlwI	GGATC	3 cut(s)	130, 810, 823
AlwNI	CAGNNNCTG	1 cut(s)	799
AoxI	GGCC	3 cut(s)	3, 717, 868
ApeKI	GCWGC	2 cut(s)	88, 994
ApoI	RAATTY	2 cut(s)	215, 549
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
Asp700I	GAANNNNTTC	2 cut(s)	553, 884
AspS9I	GGNCC	4 cut(s)	4, 33, 52, 526
AsuHPI	GGTGA	6 cut(s)	158, 389, 686, 689, 889, 992
AsuII	TTCGAA	1 cut(s)	99
AvaII	GGWCC	3 cut(s)	33, 52, 526
BaeGI	GKGCMC	1 cut(s)	750
BamHI	GGATCC	1 cut(s)	815
BbvI	GCAGC	2 cut(s)	75, 981
BccI	CCATC	5 cut(s)	113, 190, 420, 887, 1012
BciT130I	CCWGG	1 cut(s)	31
BcoDI	GTCTC	2 cut(s)	240, 828
BfaI	CTAG	2 cut(s)	18, 761
BfmI	CTRYAG	1 cut(s)	89
BfrI	CTTAAG	1 cut(s)	436
BisI	GCNGC	2 cut(s)	89, 995
BlpI	GCTNAGC	2 cut(s)	390, 395
BlsI	GCNGC	2 cut(s)	90, 996
Bme1390I	CCNGG	1 cut(s)	31
Bme18I	GGWCC	3 cut(s)	33, 52, 526
BmgT120I	GGNCC	4 cut(s)	4, 33, 52, 526
BmiI	GGNNCC	1 cut(s)	817
BmrFI	CCNGG	1 cut(s)	31
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	2 cut(s)	370, 676
BmuI	ACTGGG	1 cut(s)	160
Bpu10I	CCTNAGC	1 cut(s)	407
Bpu1102I	GCTNAGC	2 cut(s)	390, 395
Bpu14I	TTCGAA	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	915
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	3 cut(s)	408, 586, 825
Bse1I	ACTGG	4 cut(s)	155, 175, 545, 879
Bse3DI	GCAATG	2 cut(s)	347, 754
BseBI	CCWGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	595
BseLI	CCNNNNNNNGG	3 cut(s)	408, 586, 825
BseMI	GCAATG	2 cut(s)	347, 754
BseMII	CTCAG	2 cut(s)	404, 409
BseNI	ACTGG	4 cut(s)	155, 175, 545, 879
BseRI	GAGGAG	4 cut(s)	177, 311, 846, 863
BseSI	GKGCMC	1 cut(s)	750
BseXI	GCAGC	2 cut(s)	75, 981
BseYI	CCCAGC	1 cut(s)	402
BsgI	GTGCAG	1 cut(s)	935
BshFI	GGCC	3 cut(s)	5, 719, 870
BsiSI	CCGG	1 cut(s)	243
BslI	CCNNNNNNNGG	3 cut(s)	408, 586, 825
BsmAI	GTCTC	2 cut(s)	240, 828
BsnI	GGCC	3 cut(s)	5, 719, 870
Bsp119I	TTCGAA	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	750
Bsp143I	GATC	4 cut(s)	122, 751, 815, 939
Bsp1720I	GCTNAGC	2 cut(s)	390, 395
BspACI	CCGC	1 cut(s)	786
BspANI	GGCC	3 cut(s)	5, 719, 870
BspCNI	CTCAG	2 cut(s)	403, 408
BspLI	GGNNCC	1 cut(s)	817
BspMAI	CTGCAG	1 cut(s)	93
BspPI	GGATC	3 cut(s)	130, 810, 823
BspT104I	TTCGAA	1 cut(s)	99
BspTI	CTTAAG	1 cut(s)	436
BsrDI	GCAATG	2 cut(s)	347, 754
BsrI	ACTGG	4 cut(s)	155, 175, 545, 879
BssMI	GATC	4 cut(s)	122, 751, 815, 939
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	795
Bst6I	CTCTTC	1 cut(s)	154
BstAFI	CTTAAG	1 cut(s)	436
BstBI	TTCGAA	1 cut(s)	99
BstDEI	CTNAG	4 cut(s)	128, 390, 395, 407
BstENI	CCTNNNNNAGG	1 cut(s)	584
BstF5I	GGATG	1 cut(s)	595
BstKTI	GATC	4 cut(s)	125, 754, 818, 942
BstMAI	GTCTC	2 cut(s)	240, 828
BstMBI	GATC	4 cut(s)	122, 751, 815, 939
BstMWI	GCNNNNNNNGC	3 cut(s)	357, 464, 941
BstNI	CCWGG	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	29
BstSFI	CTRYAG	1 cut(s)	89
BstSLI	GKGCMC	1 cut(s)	750
BstV1I	GCAGC	2 cut(s)	75, 981
BstX2I	RGATCY	1 cut(s)	815
BstXI	CCANNNNNNTGG	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	815
BsuRI	GGCC	3 cut(s)	5, 719, 870
BtsCI	GGATG	1 cut(s)	595
BtsI	GCAGTG	1 cut(s)	280
BtsIMutI	CAGTG	3 cut(s)	280, 602, 778
CaiI	CAGNNNCTG	1 cut(s)	799
Cfr13I	GGNCC	4 cut(s)	4, 33, 52, 526
CseI	GACGC	1 cut(s)	464
Csp6I	GTAC	2 cut(s)	346, 508
CspCI	CAANNNNNGTGG	2 cut(s)	478, 513
CviAII	CATG	8 cut(s)	365, 647, 671, 739, 825, 838, 907, 978
CviQI	GTAC	2 cut(s)	346, 508
DdeI	CTNAG	4 cut(s)	128, 390, 395, 407
DpnI	GATC	4 cut(s)	124, 753, 817, 941
DpnII	GATC	4 cut(s)	122, 751, 815, 939
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Eco47I	GGWCC	3 cut(s)	33, 52, 526
Eco57I	CTGAAG	1 cut(s)	698
EcoNI	CCTNNNNNAGG	1 cut(s)	584
EcoO109I	RGGNCCY	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	549
EcoRII	CCWGG	1 cut(s)	29
FaeI	CATG	8 cut(s)	368, 650, 674, 742, 828, 841, 910, 981
FatI	CATG	8 cut(s)	364, 646, 670, 738, 824, 837, 906, 977
FblI	GTMKAC	2 cut(s)	453, 483
Fnu4HI	GCNGC	2 cut(s)	89, 995
FokI	GGATG	1 cut(s)	602
Fsp4HI	GCNGC	2 cut(s)	89, 995
FspBI	CTAG	2 cut(s)	18, 761
GluI	GCNGC	2 cut(s)	89, 995
GsaI	CCCAGC	1 cut(s)	406
HaeIII	GGCC	3 cut(s)	5, 719, 870
HapII	CCGG	1 cut(s)	243
HgaI	GACGC	1 cut(s)	464
Hin1II	CATG	8 cut(s)	368, 650, 674, 742, 828, 841, 910, 981
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	4 cut(s)	96, 299, 328, 922
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	6 cut(s)	158, 389, 686, 689, 889, 992
Hpy166II	GTNNAC	5 cut(s)	278, 454, 484, 730, 880
Hpy188I	TCNGA	4 cut(s)	181, 195, 656, 801
Hpy8I	GTNNAC	5 cut(s)	278, 454, 484, 730, 880
Hpy99I	CGWCG	1 cut(s)	458
HpyAV	CCTTC	3 cut(s)	195, 564, 710
HpyCH4III	ACNGT	1 cut(s)	795
HpyCH4IV	ACGT	1 cut(s)	966
HpyCH4V	TGCA	6 cut(s)	91, 334, 383, 620, 650, 916
HpyF10VI	GCNNNNNNNGC	3 cut(s)	357, 464, 941
HpyF3I	CTNAG	4 cut(s)	128, 390, 395, 407
HpySE526I	ACGT	1 cut(s)	966
Hsp92II	CATG	8 cut(s)	368, 650, 674, 742, 828, 841, 910, 981
Kzo9I	GATC	4 cut(s)	122, 751, 815, 939
LmnI	GCTCC	2 cut(s)	685, 809
Lsp1109I	GCAGC	2 cut(s)	75, 981
LweI	GCATC	2 cut(s)	370, 676
MaeI	CTAG	2 cut(s)	18, 761
MaeII	ACGT	1 cut(s)	966
MaeIII	GTNAC	3 cut(s)	70, 146, 773
MalI	GATC	4 cut(s)	124, 753, 817, 941
MboI	GATC	4 cut(s)	122, 751, 815, 939
MboII	GAAGA	9 cut(s)	128, 168, 171, 424, 435, 640, 704, 853, 877
MflI	RGATCY	1 cut(s)	815
MhlI	GDGCHC	1 cut(s)	750
MluCI	AATT	4 cut(s)	215, 461, 549, 708
MlyI	GAGTC	2 cut(s)	308, 337
MmeI	TCCRAC	2 cut(s)	187, 619
MnlI	CCTC	8 cut(s)	155, 289, 379, 517, 539, 824, 841, 844
MroXI	GAANNNNTTC	2 cut(s)	553, 884
MseI	TTAA	3 cut(s)	171, 437, 584
MslI	CAYNNNNRTG	4 cut(s)	534, 672, 771, 911
MspCI	CTTAAG	1 cut(s)	436
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	3 cut(s)	357, 464, 941
NdeII	GATC	4 cut(s)	122, 751, 815, 939
NlaIII	CATG	8 cut(s)	368, 650, 674, 742, 828, 841, 910, 981
NlaIV	GGNNCC	1 cut(s)	817
NmuCI	GTSAC	2 cut(s)	146, 773
NspV	TTCGAA	1 cut(s)	99
OliI	CACNNNNGTG	1 cut(s)	771
PdmI	GAANNNNTTC	2 cut(s)	553, 884
PfeI	GAWTC	2 cut(s)	96, 922
PflMI	CCANNNNNTGG	1 cut(s)	825
PfoI	TCCNGGA	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	90, 996
PleI	GAGTC	2 cut(s)	307, 336
PpsI	GAGTC	2 cut(s)	307, 336
PpuMI	RGGWCCY	1 cut(s)	33
PsiI	TTATAA	1 cut(s)	692
Psp5II	RGGWCCY	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	817
PspPI	GGNCC	4 cut(s)	4, 33, 52, 526
PspPPI	RGGWCCY	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	93
PstNI	CAGNNNCTG	1 cut(s)	799
PsuI	RGATCY	1 cut(s)	815
RsaI	GTAC	2 cut(s)	347, 509
RsaNI	GTAC	2 cut(s)	346, 508
RseI	CAYNNNNRTG	4 cut(s)	534, 672, 771, 911
SalI	GTCGAC	1 cut(s)	452
SaqAI	TTAA	3 cut(s)	171, 437, 584
SatI	GCNGC	2 cut(s)	89, 995
Sau3AI	GATC	4 cut(s)	122, 751, 815, 939
Sau96I	GGNCC	4 cut(s)	4, 33, 52, 526
SchI	GAGTC	2 cut(s)	308, 337
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	750
SetI	ASST	9 cut(s)	38, 90, 396, 408, 443, 690, 702, 969, 996
SfaNI	GCATC	2 cut(s)	370, 676
SfcI	CTRYAG	1 cut(s)	89
SfuI	TTCGAA	1 cut(s)	99
SinI	GGWCC	3 cut(s)	33, 52, 526
SmiMI	CAYNNNNRTG	4 cut(s)	534, 672, 771, 911
SmlI	CTYRAG	2 cut(s)	436, 930
SmoI	CTYRAG	2 cut(s)	436, 930
Sse9I	AATT	4 cut(s)	215, 461, 549, 708
SsiI	CCGC	1 cut(s)	786
SspI	AATATT	1 cut(s)	13
SspMI	CTAG	2 cut(s)	18, 761
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	795
TaiI	ACGT	1 cut(s)	969
TaqI	TCGA	3 cut(s)	99, 453, 501
TasI	AATT	4 cut(s)	215, 461, 549, 708
TatI	WGTACW	1 cut(s)	507
TfiI	GAWTC	2 cut(s)	96, 922
Tru1I	TTAA	3 cut(s)	171, 437, 584
Tru9I	TTAA	3 cut(s)	171, 437, 584
TscAI	CASTG	3 cut(s)	280, 609, 778
TseFI	GTSAC	2 cut(s)	146, 773
TseI	GCWGC	2 cut(s)	88, 994
Tsp45I	GTSAC	2 cut(s)	146, 773
TspDTI	ATGAA	5 cut(s)	436, 755, 854, 895, 966
TspRI	CASTG	3 cut(s)	280, 609, 778
Van91I	CCANNNNNTGG	1 cut(s)	825
Vha464I	CTTAAG	1 cut(s)	436
VpaK11BI	GGWCC	3 cut(s)	33, 52, 526
XagI	CCTNNNNNAGG	1 cut(s)	584
XapI	RAATTY	2 cut(s)	215, 549
XmiI	GTMKAC	2 cut(s)	453, 483
XmnI	GAANNNNTTC	2 cut(s)	553, 884
XspI	CTAG	2 cut(s)	18, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.