Rh4BG403300

Purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0003989
Physical Location & Seq
Forward (+)
55419495 .. 55422435
2941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG403300.1

Sequence Viewer

Length: 837 bp
ATGATACTTAGCAACTTAGCCATGGCTTGTCTTAGTTATGAAAGAACCAGAGCTTCACGCCTTCATTTGGTTTTGGTTGTGTTACTGTATTGCATTTCTTCGGAGATCAGTTCTAGTTTTGCAGAGCTTCAGAGGTTTGAACACGCACCGAAAGATGATGGCTCGATTAGATTTCTGGTGGTTGGAGATTGGGGCAGAAGAGGGTTCTATAACCAATCCAAAGTTGCTTGGCAGATGGGAAGGATTGGAGAAAAGTTGGATATAGATTTTGTGATATCGACGGGAGATAATTTCTATGGGGATGGATTAAAGGGTGTAAATGATCTTGCATTTTTGGATTCCTTTAAAAACATTTACACAGCTAAGAGCCTGCAAAAACAGTGGTATAGTGTTTTAGGAAATCATGACTATAGGGGTAATACAGAGGCACAATTGAGCCCTGCCCTCCGAAATATTGATAGTCGATGGCTTTGCCTGAGATCTTTTATTGTCAATGCTGCAGAAGTTGCAGAATTTTTTTTCGTGGACACTACTCCATTTGCGATCAAATACATAACTGACAAAAGGCATCAATATGATTGGAGCGGTGTGTCTCCCCATGGAGCTTACATTACCAACCTTCTAAAGGATTTAAATGTAGCATTGAGGAAGTCGAGTGCCAAGTGGAAGATAGTGATTGGTCACCATACAATCAGAAGTGCTGGACATCACGGCGAGACACAGGAGCTGGTGAGGCACCTCTTGCCAATACTCAAGGCTCATAATGTTGATATGTACATGAATGGACATGACCACTGCCTGCAGCACATTAGCAGCCTCAATAGGTACACTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323
Pfam Domains
Protein Families
Metallophos

Protein Analysis

278

Amino Acids

31.74

Weight (kDa)

8.79

Isoelectric Point (pI)

44.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 56 - 266 2.6e-19 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 735
AccBSI CCGCTC 1 cut(s) 585
AciI CCGC 1 cut(s) 585
AcsI RAATTY 1 cut(s) 512
AcuI CTGAAG 1 cut(s) 113
AfaI GTAC 2 cut(s) 776, 827
AfiI CCNNNNNNNGG 2 cut(s) 67, 625
AgsI TTSAA 1 cut(s) 140
AluBI AGCT 5 cut(s) 53, 127, 362, 605, 727
AluI AGCT 5 cut(s) 53, 127, 362, 605, 727
Alw26I GTCTC 2 cut(s) 597, 710
AlwNI CAGNNNCTG 1 cut(s) 727
ApeKI GCWGC 3 cut(s) 497, 802, 813
ApoI RAATTY 1 cut(s) 512
AsuHPI GGTGA 2 cut(s) 674, 742
BanI GGYRCC 1 cut(s) 735
BanII GRGCYC 1 cut(s) 440
BbvI GCAGC 3 cut(s) 484, 814, 825
BccI CCATC 4 cut(s) 152, 229, 296, 459
BceAI ACGGC 1 cut(s) 727
BcgI CGANNNNNNTGC 2 cut(s) 453, 487
BcoDI GTCTC 2 cut(s) 597, 710
BfaI CTAG 1 cut(s) 114
BfmI CTRYAG 3 cut(s) 409, 498, 800
BglII AGATCT 1 cut(s) 479
BisI GCNGC 3 cut(s) 498, 803, 814
BlsI GCNGC 3 cut(s) 499, 804, 815
BmiI GGNNCC 1 cut(s) 737
BmsI GCATC 1 cut(s) 577
BpuEI CTTGAG 1 cut(s) 737
BsaJI CCNNGG 2 cut(s) 21, 598
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 625
BseDI CCNNGG 2 cut(s) 21, 598
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 2 cut(s) 67, 625
BseMII CTCAG 1 cut(s) 467
BseXI GCAGC 3 cut(s) 484, 814, 825
BshNI GGYRCC 1 cut(s) 735
BslI CCNNNNNNNGG 2 cut(s) 67, 625
BsmAI GTCTC 2 cut(s) 597, 710
Bsp1286I GDGCHC 1 cut(s) 440
Bsp1407I TGTACA 1 cut(s) 774
Bsp143I GATC 4 cut(s) 105, 322, 479, 543
Bsp19I CCATGG 2 cut(s) 21, 598
BspACI CCGC 1 cut(s) 585
BspCNI CTCAG 1 cut(s) 468
BspHI TCATGA 1 cut(s) 403
BspLI GGNNCC 1 cut(s) 737
BspMAI CTGCAG 2 cut(s) 502, 804
BspT107I GGYRCC 1 cut(s) 735
BsrBI CCGCTC 1 cut(s) 585
BsrGI TGTACA 1 cut(s) 774
BssECI CCNNGG 2 cut(s) 21, 598
BssMI GATC 4 cut(s) 105, 322, 479, 543
BssT1I CCWWGG 2 cut(s) 21, 598
Bst4CI ACNGT 2 cut(s) 87, 381
Bst6I CTCTTC 1 cut(s) 193
BstAPI GCANNNNNTGC 2 cut(s) 506, 742
BstAUI TGTACA 1 cut(s) 774
BstC8I GCNNGC 2 cut(s) 371, 800
BstDEI CTNAG 5 cut(s) 8, 16, 32, 363, 476
BstDSI CCRYGG 2 cut(s) 21, 598
BstEII GGTNACC 1 cut(s) 680
BstENI CCTNNNNNAGG 1 cut(s) 623
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 4 cut(s) 108, 325, 482, 546
BstMAI GTCTC 2 cut(s) 597, 710
BstMBI GATC 4 cut(s) 105, 322, 479, 543
BstMWI GCNNNNNNNGC 3 cut(s) 506, 733, 742
BstPI GGTNACC 1 cut(s) 680
BstSFI CTRYAG 3 cut(s) 409, 498, 800
BstV1I GCAGC 3 cut(s) 484, 814, 825
BstX2I RGATCY 1 cut(s) 479
BstYI RGATCY 1 cut(s) 479
BtgI CCRYGG 2 cut(s) 21, 598
BtsCI GGATG 1 cut(s) 307
BtsI GCAGTG 1 cut(s) 793
BtsIMutI CAGTG 2 cut(s) 386, 793
Cac8I GCNNGC 2 cut(s) 371, 800
CaiI CAGNNNCTG 1 cut(s) 727
CciI TCATGA 1 cut(s) 403
Csp6I GTAC 2 cut(s) 775, 826
CspCI CAANNNNNGTGG 2 cut(s) 362, 397
CviAII CATG 5 cut(s) 22, 404, 599, 778, 788
CviQI GTAC 2 cut(s) 775, 826
DdeI CTNAG 5 cut(s) 8, 16, 32, 363, 476
DpnI GATC 4 cut(s) 107, 324, 481, 545
DpnII GATC 4 cut(s) 105, 322, 479, 543
DraI TTTAAA 2 cut(s) 346, 633
Eam1104I CTCTTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 193
Eco130I CCWWGG 2 cut(s) 21, 598
Eco24I GRGCYC 1 cut(s) 440
Eco32I GATATC 1 cut(s) 276
Eco57I CTGAAG 1 cut(s) 113
Eco91I GGTNACC 1 cut(s) 680
EcoNI CCTNNNNNAGG 1 cut(s) 623
EcoO65I GGTNACC 1 cut(s) 680
EcoRV GATATC 1 cut(s) 276
EcoT14I CCWWGG 2 cut(s) 21, 598
EcoT38I GRGCYC 1 cut(s) 440
ErhI CCWWGG 2 cut(s) 21, 598
FaeI CATG 5 cut(s) 25, 407, 602, 781, 791
FatI CATG 5 cut(s) 21, 403, 598, 777, 787
Fnu4HI GCNGC 3 cut(s) 498, 803, 814
FokI GGATG 1 cut(s) 314
FriOI GRGCYC 1 cut(s) 440
Fsp4HI GCNGC 3 cut(s) 498, 803, 814
FspBI CTAG 1 cut(s) 114
GluI GCNGC 3 cut(s) 498, 803, 814
Hin1II CATG 5 cut(s) 25, 407, 602, 781, 791
HinfI GANTC 1 cut(s) 338
HphI GGTGA 2 cut(s) 674, 742
Hpy166II GTNNAC 2 cut(s) 526, 828
Hpy188I TCNGA 4 cut(s) 103, 132, 449, 695
Hpy188III TCNNGA 1 cut(s) 404
Hpy8I GTNNAC 2 cut(s) 526, 828
Hpy99I CGWCG 1 cut(s) 283
HpyAV CCTTC 3 cut(s) 71, 234, 629
HpyCH4III ACNGT 2 cut(s) 87, 381
HpyCH4V TGCA 7 cut(s) 93, 122, 329, 373, 500, 509, 802
HpyF10VI GCNNNNNNNGC 3 cut(s) 506, 733, 742
HpyF3I CTNAG 5 cut(s) 8, 16, 32, 363, 476
Hsp92II CATG 5 cut(s) 25, 407, 602, 781, 791
Kzo9I GATC 4 cut(s) 105, 322, 479, 543
LmnI GCTCC 3 cut(s) 582, 602, 724
LpnPI CCDG 9 cut(s) 61, 161, 383, 453, 488, 687, 707, 713, 812
Lsp1109I GCAGC 3 cut(s) 484, 814, 825
LweI GCATC 1 cut(s) 577
MaeI CTAG 1 cut(s) 114
MaeIII GTNAC 2 cut(s) 81, 680
MalI GATC 4 cut(s) 107, 324, 481, 545
MbiI CCGCTC 1 cut(s) 585
MboI GATC 4 cut(s) 105, 322, 479, 543
MboII GAAGA 3 cut(s) 90, 210, 679
MfeI CAATTG 1 cut(s) 431
MflI RGATCY 1 cut(s) 479
MhlI GDGCHC 1 cut(s) 440
MluCI AATT 3 cut(s) 289, 431, 512
MmeI TCCRAC 2 cut(s) 163, 237
MnlI CCTC 8 cut(s) 126, 194, 418, 455, 639, 726, 749, 827
MseI TTAA 3 cut(s) 308, 345, 632
MslI CAYNNNNRTG 1 cut(s) 573
MunI CAATTG 1 cut(s) 431
MwoI GCNNNNNNNGC 3 cut(s) 506, 733, 742
NcoI CCATGG 2 cut(s) 21, 598
NdeII GATC 4 cut(s) 105, 322, 479, 543
NlaIII CATG 5 cut(s) 25, 407, 602, 781, 791
NlaIV GGNNCC 1 cut(s) 737
NmuCI GTSAC 1 cut(s) 680
PagI TCATGA 1 cut(s) 403
PfeI GAWTC 1 cut(s) 338
PkrI GCNGC 3 cut(s) 499, 804, 815
PspEI GGTNACC 1 cut(s) 680
PspN4I GGNNCC 1 cut(s) 737
PstI CTGCAG 2 cut(s) 502, 804
PstNI CAGNNNCTG 1 cut(s) 727
PsuI RGATCY 1 cut(s) 479
RsaI GTAC 2 cut(s) 776, 827
RsaNI GTAC 2 cut(s) 775, 826
RseI CAYNNNNRTG 1 cut(s) 573
SaqAI TTAA 3 cut(s) 308, 345, 632
SatI GCNGC 3 cut(s) 498, 803, 814
Sau3AI GATC 4 cut(s) 105, 322, 479, 543
SduI GDGCHC 1 cut(s) 440
SetI ASST 9 cut(s) 55, 129, 137, 364, 607, 621, 729, 741, 827
SfaNI GCATC 1 cut(s) 577
SfcI CTRYAG 3 cut(s) 409, 498, 800
SmiI ATTTAAAT 1 cut(s) 633
SmiMI CAYNNNNRTG 1 cut(s) 573
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
Sse9I AATT 3 cut(s) 289, 431, 512
SsiI CCGC 1 cut(s) 585
SspI AATATT 1 cut(s) 454
SspMI CTAG 1 cut(s) 114
StyI CCWWGG 2 cut(s) 21, 598
SwaI ATTTAAAT 1 cut(s) 633
TaaI ACNGT 2 cut(s) 87, 381
TaqI TCGA 4 cut(s) 164, 278, 463, 653
TasI AATT 3 cut(s) 289, 431, 512
TatI WGTACW 1 cut(s) 774
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 3 cut(s) 308, 345, 632
Tru9I TTAA 3 cut(s) 308, 345, 632
TscAI CASTG 2 cut(s) 386, 800
TseFI GTSAC 1 cut(s) 680
TseI GCWGC 3 cut(s) 497, 802, 813
Tsp45I GTSAC 1 cut(s) 680
TspDTI ATGAA 3 cut(s) 53, 54, 794
TspRI CASTG 2 cut(s) 386, 800
XagI CCTNNNNNAGG 1 cut(s) 623
XapI RAATTY 1 cut(s) 512
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.