RchiOBHm_Chr4g0442041

Purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0003989
Physical Location & Seq
Forward (+)
63769327 .. 63771195
1869 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40981

Sequence Viewer

Length: 1038 bp
ATGATACTTAGCAACTTAGCCATGGCTTGTCTTAGTTATGAAAGAACCAGAGCTTCACGCCTTCATTTGGTTTTGGTTGTGTTACTTTATTGCATTTCTTCGGAGATCAGCTCTAGTTTTGCAGAGCTTCAGAGGTTTGAACACGCACCGAAAGATGATGGCTCGATTAGATTTCTGGTGGTTGGAGATTGGGGCAGAAGAGGGTTCTATAACCAATCCAAAGTTGCTTGGCAGATGGGAAGGATTGGAGAAAAGTTGGATATAGATTTTGTGATATCGACGGGAGATAATTTCTATGGGGATGGATTAAAGGGGGTAAATGATCTTGCATTTTTGGATTCCTTTAAAAACATTTACACAGCTAAGAGCCTGCAAAAACAGTGGTATAGTGTTTTAGGAAATCATGACTATAGGGGTAATACAGAGGCACAATTGAGCCCTGCCCTCCGAAAGATTGATAGTCGATGGCTTTGCCTGAGATCTTTTATTGTCAATGCTGCAGAAATTGCAGAATTTTTTTTCGTGGACACTACTCCATTTGCGACCAAATACATAACTGACAAAAAGCATCAATATGATTGGAGCGGTGTGTCTCCCCATGGAGCTTACATTACCAACCTTCTAAAGGATTTAAATGTAGCATTGAGGAAGTCGAGTGCCAAGTGGAAGATAGTGATTGGTCACCATACAATCAGAAGTGCTGGACATCACGGCGAGACACAGGAGCTGGTGAGGCACCTCTTGCCAATACTCAAGGCTCATAATGTTGATATGTACATAAATGGACATGACCACTGCCTGCAGCACATTAGCAGCCTCAATAGTCCGATTCAGTATTTCACAAGCGGAGCGGGTTCGAAAGCATGGAGGGGTGATATTAAGGAATACAATAGTGAGGCCATGAAGTTCTTCCATGATGGTCAAGGTTTCATGTCTGTGAACTTGACCCGATCGGATGCTCTTATCGTGTTTTATGACGTTTTAGGCAGGATTTTGCATACATGGAAGCTCAATAAGCAGCTTCACTCCGCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323
Pfam Domains
Protein Families
Metallophos

Protein Analysis

345

Amino Acids

39.28

Weight (kDa)

8.98

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 56 - 266 1.1e-19 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 735
AccBSI CCGCTC 2 cut(s) 585, 851
AciI CCGC 4 cut(s) 585, 846, 851, 1029
AcsI RAATTY 1 cut(s) 512
AcuI CTGAAG 1 cut(s) 113
AfaI GTAC 1 cut(s) 776
AfiI CCNNNNNNNGG 2 cut(s) 67, 625
AgsI TTSAA 1 cut(s) 140
AluBI AGCT 8 cut(s) 53, 111, 127, 362, 605, 727, 1009, 1021
AluI AGCT 8 cut(s) 53, 111, 127, 362, 605, 727, 1009, 1021
Alw26I GTCTC 2 cut(s) 597, 710
AlwNI CAGNNNCTG 1 cut(s) 727
AoxI GGCC 1 cut(s) 897
ApeKI GCWGC 4 cut(s) 497, 802, 813, 1018
ApoI RAATTY 1 cut(s) 512
Asp700I GAANNNNTTC 1 cut(s) 908
AsuHPI GGTGA 3 cut(s) 674, 742, 884
AsuII TTCGAA 1 cut(s) 857
BanI GGYRCC 1 cut(s) 735
BanII GRGCYC 1 cut(s) 440
BbvI GCAGC 4 cut(s) 484, 814, 825, 1030
BccI CCATC 5 cut(s) 152, 229, 296, 459, 911
BceAI ACGGC 1 cut(s) 727
BcgI CGANNNNNNTGC 2 cut(s) 453, 487
BcoDI GTCTC 2 cut(s) 597, 710
BfaI CTAG 1 cut(s) 114
BfmI CTRYAG 3 cut(s) 409, 498, 800
BglII AGATCT 1 cut(s) 479
BisI GCNGC 4 cut(s) 498, 803, 814, 1019
BlsI GCNGC 4 cut(s) 499, 804, 815, 1020
BmiI GGNNCC 1 cut(s) 737
BmsI GCATC 2 cut(s) 577, 946
BplI GAGNNNNNCTC 2 cut(s) 95, 127
Bpu14I TTCGAA 1 cut(s) 857
BpuEI CTTGAG 1 cut(s) 737
BsaJI CCNNGG 2 cut(s) 21, 598
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 625
BseDI CCNNGG 2 cut(s) 21, 598
BseGI GGATG 2 cut(s) 307, 961
BseLI CCNNNNNNNGG 2 cut(s) 67, 625
BseMII CTCAG 1 cut(s) 467
BseXI GCAGC 4 cut(s) 484, 814, 825, 1030
Bsh1285I CGRYCG 1 cut(s) 953
BshFI GGCC 1 cut(s) 899
BshNI GGYRCC 1 cut(s) 735
BsiEI CGRYCG 1 cut(s) 953
BslI CCNNNNNNNGG 2 cut(s) 67, 625
BsmAI GTCTC 2 cut(s) 597, 710
BsnI GGCC 1 cut(s) 899
Bsp119I TTCGAA 1 cut(s) 857
Bsp1286I GDGCHC 1 cut(s) 440
Bsp1407I TGTACA 1 cut(s) 774
Bsp143I GATC 4 cut(s) 105, 322, 479, 950
Bsp19I CCATGG 2 cut(s) 21, 598
BspACI CCGC 4 cut(s) 585, 846, 851, 1029
BspANI GGCC 1 cut(s) 899
BspCNI CTCAG 1 cut(s) 468
BspHI TCATGA 1 cut(s) 403
BspLI GGNNCC 1 cut(s) 737
BspMAI CTGCAG 2 cut(s) 502, 804
BspT104I TTCGAA 1 cut(s) 857
BspT107I GGYRCC 1 cut(s) 735
BsrBI CCGCTC 2 cut(s) 585, 851
BsrGI TGTACA 1 cut(s) 774
BssECI CCNNGG 2 cut(s) 21, 598
BssMI GATC 4 cut(s) 105, 322, 479, 950
BssT1I CCWWGG 2 cut(s) 21, 598
Bst4CI ACNGT 1 cut(s) 381
Bst6I CTCTTC 1 cut(s) 193
BstAPI GCANNNNNTGC 2 cut(s) 506, 742
BstAUI TGTACA 1 cut(s) 774
BstBI TTCGAA 1 cut(s) 857
BstC8I GCNNGC 2 cut(s) 371, 800
BstDEI CTNAG 5 cut(s) 8, 16, 32, 363, 476
BstDSI CCRYGG 2 cut(s) 21, 598
BstEII GGTNACC 1 cut(s) 680
BstENI CCTNNNNNAGG 1 cut(s) 623
BstF5I GGATG 2 cut(s) 307, 961
BstKTI GATC 4 cut(s) 108, 325, 482, 953
BstMAI GTCTC 2 cut(s) 597, 710
BstMBI GATC 4 cut(s) 105, 322, 479, 950
BstMCI CGRYCG 1 cut(s) 953
BstMWI GCNNNNNNNGC 4 cut(s) 506, 733, 742, 1015
BstPI GGTNACC 1 cut(s) 680
BstSFI CTRYAG 3 cut(s) 409, 498, 800
BstV1I GCAGC 4 cut(s) 484, 814, 825, 1030
BstX2I RGATCY 1 cut(s) 479
BstYI RGATCY 1 cut(s) 479
BsuRI GGCC 1 cut(s) 899
BtgI CCRYGG 2 cut(s) 21, 598
BtsCI GGATG 2 cut(s) 307, 961
BtsI GCAGTG 1 cut(s) 793
BtsIMutI CAGTG 2 cut(s) 386, 793
Cac8I GCNNGC 2 cut(s) 371, 800
CaiI CAGNNNCTG 1 cut(s) 727
CciI TCATGA 1 cut(s) 403
Csp6I GTAC 1 cut(s) 775
CspCI CAANNNNNGTGG 2 cut(s) 362, 397
CviAII CATG 9 cut(s) 22, 404, 599, 788, 864, 901, 914, 931, 1002
CviQI GTAC 1 cut(s) 775
DdeI CTNAG 5 cut(s) 8, 16, 32, 363, 476
DpnI GATC 4 cut(s) 107, 324, 481, 952
DpnII GATC 4 cut(s) 105, 322, 479, 950
DraI TTTAAA 2 cut(s) 346, 633
Eam1104I CTCTTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 193
Eco130I CCWWGG 2 cut(s) 21, 598
Eco24I GRGCYC 1 cut(s) 440
Eco32I GATATC 1 cut(s) 276
Eco57I CTGAAG 1 cut(s) 113
Eco91I GGTNACC 1 cut(s) 680
EcoNI CCTNNNNNAGG 1 cut(s) 623
EcoO65I GGTNACC 1 cut(s) 680
EcoRV GATATC 1 cut(s) 276
EcoT14I CCWWGG 2 cut(s) 21, 598
EcoT38I GRGCYC 1 cut(s) 440
ErhI CCWWGG 2 cut(s) 21, 598
FaeI CATG 9 cut(s) 25, 407, 602, 791, 867, 904, 917, 934, 1005
FatI CATG 9 cut(s) 21, 403, 598, 787, 863, 900, 913, 930, 1001
FauI CCCGC 1 cut(s) 844
Fnu4HI GCNGC 4 cut(s) 498, 803, 814, 1019
FokI GGATG 2 cut(s) 314, 968
FriOI GRGCYC 1 cut(s) 440
Fsp4HI GCNGC 4 cut(s) 498, 803, 814, 1019
FspBI CTAG 1 cut(s) 114
GluI GCNGC 4 cut(s) 498, 803, 814, 1019
HaeIII GGCC 1 cut(s) 899
Hin1II CATG 9 cut(s) 25, 407, 602, 791, 867, 904, 917, 934, 1005
HinfI GANTC 2 cut(s) 338, 829
HphI GGTGA 3 cut(s) 674, 742, 884
Hpy166II GTNNAC 2 cut(s) 526, 940
Hpy188I TCNGA 6 cut(s) 103, 132, 449, 695, 828, 955
Hpy188III TCNNGA 1 cut(s) 404
Hpy8I GTNNAC 2 cut(s) 526, 940
Hpy99I CGWCG 1 cut(s) 283
HpyAV CCTTC 3 cut(s) 71, 234, 629
HpyCH4III ACNGT 1 cut(s) 381
HpyCH4IV ACGT 1 cut(s) 978
HpyCH4V TGCA 8 cut(s) 93, 122, 329, 373, 500, 509, 802, 997
HpyF10VI GCNNNNNNNGC 4 cut(s) 506, 733, 742, 1015
HpyF3I CTNAG 5 cut(s) 8, 16, 32, 363, 476
HpySE526I ACGT 1 cut(s) 978
Hsp92II CATG 9 cut(s) 25, 407, 602, 791, 867, 904, 917, 934, 1005
Kzo9I GATC 4 cut(s) 105, 322, 479, 950
LmnI GCTCC 4 cut(s) 582, 602, 724, 848
Lsp1109I GCAGC 4 cut(s) 484, 814, 825, 1030
LweI GCATC 2 cut(s) 577, 946
MaeI CTAG 1 cut(s) 114
MaeII ACGT 1 cut(s) 978
MaeIII GTNAC 2 cut(s) 81, 680
MalI GATC 4 cut(s) 107, 324, 481, 952
MbiI CCGCTC 2 cut(s) 585, 851
MboI GATC 4 cut(s) 105, 322, 479, 950
MboII GAAGA 4 cut(s) 90, 210, 679, 901
MfeI CAATTG 1 cut(s) 431
MflI RGATCY 1 cut(s) 479
MhlI GDGCHC 1 cut(s) 440
MluCI AATT 4 cut(s) 289, 431, 504, 512
MmeI TCCRAC 2 cut(s) 163, 237
MroXI GAANNNNTTC 1 cut(s) 908
MseI TTAA 4 cut(s) 308, 345, 632, 879
MslI CAYNNNNRTG 2 cut(s) 573, 935
MunI CAATTG 1 cut(s) 431
MwoI GCNNNNNNNGC 4 cut(s) 506, 733, 742, 1015
NcoI CCATGG 2 cut(s) 21, 598
NdeII GATC 4 cut(s) 105, 322, 479, 950
NlaIII CATG 9 cut(s) 25, 407, 602, 791, 867, 904, 917, 934, 1005
NlaIV GGNNCC 1 cut(s) 737
NmuCI GTSAC 1 cut(s) 680
NspV TTCGAA 1 cut(s) 857
PagI TCATGA 1 cut(s) 403
PdmI GAANNNNTTC 1 cut(s) 908
PfeI GAWTC 2 cut(s) 338, 829
PkrI GCNGC 4 cut(s) 499, 804, 815, 1020
Ple19I CGATCG 1 cut(s) 953
PspEI GGTNACC 1 cut(s) 680
PspN4I GGNNCC 1 cut(s) 737
PstI CTGCAG 2 cut(s) 502, 804
PstNI CAGNNNCTG 1 cut(s) 727
PsuI RGATCY 1 cut(s) 479
PvuI CGATCG 1 cut(s) 953
RsaI GTAC 1 cut(s) 776
RsaNI GTAC 1 cut(s) 775
RseI CAYNNNNRTG 2 cut(s) 573, 935
SaqAI TTAA 4 cut(s) 308, 345, 632, 879
SatI GCNGC 4 cut(s) 498, 803, 814, 1019
Sau3AI GATC 4 cut(s) 105, 322, 479, 950
SduI GDGCHC 1 cut(s) 440
SfaNI GCATC 2 cut(s) 577, 946
SfcI CTRYAG 3 cut(s) 409, 498, 800
SfuI TTCGAA 1 cut(s) 857
SmiI ATTTAAAT 1 cut(s) 633
SmiMI CAYNNNNRTG 2 cut(s) 573, 935
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
Sse9I AATT 4 cut(s) 289, 431, 504, 512
SsiI CCGC 4 cut(s) 585, 846, 851, 1029
SspMI CTAG 1 cut(s) 114
StyI CCWWGG 2 cut(s) 21, 598
SwaI ATTTAAAT 1 cut(s) 633
TaaI ACNGT 1 cut(s) 381
TaiI ACGT 1 cut(s) 981
TaqI TCGA 5 cut(s) 164, 278, 463, 653, 857
TasI AATT 4 cut(s) 289, 431, 504, 512
TatI WGTACW 1 cut(s) 774
TfiI GAWTC 2 cut(s) 338, 829
Tru1I TTAA 4 cut(s) 308, 345, 632, 879
Tru9I TTAA 4 cut(s) 308, 345, 632, 879
TscAI CASTG 2 cut(s) 386, 800
TseFI GTSAC 1 cut(s) 680
TseI GCWGC 4 cut(s) 497, 802, 813, 1018
Tsp45I GTSAC 1 cut(s) 680
TspDTI ATGAA 4 cut(s) 53, 54, 917, 919
TspRI CASTG 2 cut(s) 386, 800
XagI CCTNNNNNAGG 1 cut(s) 623
XapI RAATTY 1 cut(s) 512
XmnI GAANNNNTTC 1 cut(s) 908
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.