Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003989

Physical Location & Seq

Genomic Coordinates Forward (+)

773214 .. 775278

Gene Structure 2065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG009700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCCCCAAATATTCCTTGTAAGAAATCCAGGACCTCGTGCGTTTTCTTGGTCCTCCTCAGCTCTGTTCTTTGTATTGTAACTACATCTGCAGAGCTGCAGAGATTCGAACACCCCACAAAAGAAGATGGATCACTTAGCTTTCTAGTGCTTGGTGACTGGGGAAGAAGAGGAGAATTTAACCAGTCCGAAGTTGCCTTTCAGATGGGAAGGGTTGGAGAGAAACTTGACATAGATTTTGTAGTTTCCACTGGAGACAACTTTTATGATAATGGATTGAGCAGCGAACACGATACGGCATTTGAGGAGTCATTTACCAAAATCTATACACAAAAGAGTCTGCTAAAGCAGTGGTACAGCATTTTAGGCAACCATGATTACAGGGGTGATGCAGAGGCTCAACTCAGCCCCCTGCTAAGGAAGATTGACAGAAGATGGCTTTGCTTAAGATCTTTCATTGTTGACGCAGAATTAGCAGATATTTTGTTTGTGGACACCACTCCTTTTGTCAATATGTACTTCACAAGCACAGAGGACCATACTTATGATTGGCGAGGAATTCCTTCTCGCAAGGCTTATATTCAAACCTTATTGAAGGATGTTGAGTTGGCATTGAAAATGTCATCTGCAAAGTGGAAGATAGTTGTTGGACACCATGCAATTAGAAGCATTGGGCATCATGGTGATACACAGGAGCTTATAAAGCACCTTCTCCCAATTCTTCAGGTATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005623 GO:0006793 GO:0006796 GO:0006873 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009986 GO:0009987 GO:0010035 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042221 GO:0042493 GO:0042542 GO:0042578 GO:0042592 GO:0044237 GO:0044464 GO:0046677 GO:0048878 GO:0050801 GO:0050896 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

244

Amino Acids

27.89

Weight (kDa)

6.14

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	47 - 234	9.8e-16	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17790
fragaria_vesca	FvH4_4g33010 FvH4_5g17770 FvH4_5g17770
malus_domestica	MD06G1233500.v1.1 MD14G1240300.v1.1 MD16G1013500.v1.1
prunus_persica	Prupe.1G337700_v2.0.a1 Prupe.5G237900_v2.0.a1
pyrus_communis	pycom06g20810 pycom14g20180 pycom16g01260
rosa_chinensis	RchiOBHm_Chr4g0442041 RchiOBHm_Chr7g0177841
rosa_laevigata	RLG00000005498 RLG00000006049
rosa_multiflora	Rmu_sc0002501.1_g000015 Rmu_sc0006214.1_g000006
rosa_roxburghii	Rroxscaffold_3G00275510 Rroxscaffold_5G00382960
rosa_rugosa	Rorug04G0338300 Rorug04G0338300 Rorug06G0410000
rosa_samantha	Rh4AG389900 Rh4BG403300 Rh4CG418400 Rh4DG396500 Rh7AG009500 Rh7BG009600 Rh7CG009700 Rh7DG009600
rosa_wichuraiana	Rw4G033690 Rw7G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	701
AclWI	GGATC	1 cut(s)	139
AcsI	RAATTY	2 cut(s)	176, 558
AcuI	CTGAAG	1 cut(s)	707
AfaI	GTAC	2 cut(s)	356, 518
AfiI	CCNNNNNNNGG	1 cut(s)	417
AflII	CTTAAG	1 cut(s)	445
AgsI	TTSAA	3 cut(s)	584, 595, 616
AjnI	CCWGG	1 cut(s)	29
AluBI	AGCT	4 cut(s)	63, 97, 141, 697
AluI	AGCT	4 cut(s)	63, 97, 141, 697
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	139
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	97, 282
ApoI	RAATTY	2 cut(s)	176, 558
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
Asp700I	GAANNNNTTC	1 cut(s)	562
AspS9I	GGNCC	4 cut(s)	4, 33, 52, 535
AsuHPI	GGTGA	3 cut(s)	167, 398, 695
AsuII	TTCGAA	1 cut(s)	108
AvaII	GGWCC	3 cut(s)	33, 52, 535
BauI	CACGAG	1 cut(s)	37
BbvCI	CCTCAGC	1 cut(s)	59
BbvI	GCAGC	2 cut(s)	84, 294
BccI	CCATC	3 cut(s)	122, 199, 429
BceAI	ACGGC	1 cut(s)	312
BciT130I	CCWGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	2 cut(s)	90, 98
BfrI	CTTAAG	1 cut(s)	445
BglII	AGATCT	1 cut(s)	449
BisI	GCNGC	2 cut(s)	98, 283
BlsI	GCNGC	2 cut(s)	99, 284
Bme1390I	CCNGG	1 cut(s)	31
Bme18I	GGWCC	3 cut(s)	33, 52, 535
BmgT120I	GGNCC	4 cut(s)	4, 33, 52, 535
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	31
BmrI	ACTGGG	1 cut(s)	169
BmsI	GCATC	2 cut(s)	379, 685
BmuI	ACTGGG	1 cut(s)	169
BpmI	CTGGAG	1 cut(s)	273
Bpu10I	CCTNAGC	2 cut(s)	59, 416
Bpu14I	TTCGAA	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	417
Bse1I	ACTGG	3 cut(s)	164, 184, 256
BseBI	CCWGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	604
BseLI	CCNNNNNNNGG	1 cut(s)	417
BseMII	CTCAG	2 cut(s)	73, 418
BseNI	ACTGG	3 cut(s)	164, 184, 256
BseRI	GAGGAG	3 cut(s)	47, 186, 320
BseXI	GCAGC	2 cut(s)	84, 294
BshFI	GGCC	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	417
BsmAI	GTCTC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	131, 449
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	72, 417
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	2 cut(s)	94, 102
BspPI	GGATC	1 cut(s)	139
BspT104I	TTCGAA	1 cut(s)	108
BspTI	CTTAAG	1 cut(s)	445
BsrI	ACTGG	3 cut(s)	164, 184, 256
BssMI	GATC	2 cut(s)	131, 449
BssSI	CACGAG	1 cut(s)	37
Bst2BI	CACGAG	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	163
BstAFI	CTTAAG	1 cut(s)	445
BstBI	TTCGAA	1 cut(s)	108
BstDEI	CTNAG	4 cut(s)	59, 137, 404, 416
BstF5I	GGATG	1 cut(s)	604
BstKTI	GATC	2 cut(s)	134, 452
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	2 cut(s)	131, 449
BstMWI	GCNNNNNNNGC	3 cut(s)	366, 473, 703
BstNI	CCWGG	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	29
BstSFI	CTRYAG	2 cut(s)	90, 98
BstV1I	GCAGC	2 cut(s)	84, 294
BstX2I	RGATCY	1 cut(s)	449
BstYI	RGATCY	1 cut(s)	449
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	604
BtsI	GCAGTG	1 cut(s)	356
BtsIMutI	CAGTG	2 cut(s)	249, 356
Cfr13I	GGNCC	4 cut(s)	4, 33, 52, 535
CseI	GACGC	1 cut(s)	473
Csp6I	GTAC	2 cut(s)	355, 517
CspCI	CAANNNNNGTGG	2 cut(s)	487, 522
CviAII	CATG	3 cut(s)	374, 656, 680
CviJI	RGCY	9 cut(s)	5, 63, 97, 141, 398, 408, 439, 575, 697
CviKI_1	RGCY	9 cut(s)	5, 63, 97, 141, 398, 408, 439, 575, 697
CviQI	GTAC	2 cut(s)	355, 517
DdeI	CTNAG	4 cut(s)	59, 137, 404, 416
DpnI	GATC	2 cut(s)	133, 451
DpnII	GATC	2 cut(s)	131, 449
Eam1104I	CTCTTC	1 cut(s)	163
EarI	CTCTTC	1 cut(s)	163
Eco47I	GGWCC	3 cut(s)	33, 52, 535
Eco57I	CTGAAG	1 cut(s)	707
EcoO109I	RGGNCCY	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	558
EcoRII	CCWGG	1 cut(s)	29
FaeI	CATG	3 cut(s)	377, 659, 683
FatI	CATG	3 cut(s)	373, 655, 679
Fnu4HI	GCNGC	2 cut(s)	98, 283
FokI	GGATG	1 cut(s)	611
Fsp4HI	GCNGC	2 cut(s)	98, 283
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	2 cut(s)	98, 283
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	473
Hin1II	CATG	3 cut(s)	377, 659, 683
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	3 cut(s)	105, 308, 337
HphI	GGTGA	3 cut(s)	167, 398, 695
Hpy166II	GTNNAC	2 cut(s)	463, 493
Hpy188I	TCNGA	2 cut(s)	190, 204
Hpy8I	GTNNAC	2 cut(s)	463, 493
HpyAV	CCTTC	4 cut(s)	204, 573, 589, 719
HpyCH4V	TGCA	5 cut(s)	92, 100, 392, 629, 659
HpyF10VI	GCNNNNNNNGC	3 cut(s)	366, 473, 703
HpyF3I	CTNAG	4 cut(s)	59, 137, 404, 416
Hsp92II	CATG	3 cut(s)	377, 659, 683
Kzo9I	GATC	2 cut(s)	131, 449
LmnI	GCTCC	1 cut(s)	694
LpnPI	CCDG	9 cut(s)	16, 43, 145, 197, 237, 367, 425, 677, 710
Lsp1109I	GCAGC	2 cut(s)	84, 294
LweI	GCATC	2 cut(s)	379, 685
MaeI	CTAG	1 cut(s)	146
MaeIII	GTNAC	2 cut(s)	79, 155
MalI	GATC	2 cut(s)	133, 451
MboI	GATC	2 cut(s)	131, 449
MboII	GAAGA	7 cut(s)	137, 177, 180, 433, 444, 649, 713
MflI	RGATCY	1 cut(s)	449
MluCI	AATT	5 cut(s)	176, 470, 558, 660, 717
MlyI	GAGTC	2 cut(s)	317, 346
MmeI	TCCRAC	2 cut(s)	196, 628
MnlI	CCTC	8 cut(s)	46, 65, 68, 164, 298, 388, 526, 548
MroXI	GAANNNNTTC	1 cut(s)	562
MseI	TTAA	3 cut(s)	180, 446, 733
MslI	CAYNNNNRTG	2 cut(s)	543, 681
MspCI	CTTAAG	1 cut(s)	445
MspR9I	CCNGG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	3 cut(s)	366, 473, 703
NdeII	GATC	2 cut(s)	131, 449
NlaIII	CATG	3 cut(s)	377, 659, 683
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	155
NspV	TTCGAA	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	562
PfeI	GAWTC	1 cut(s)	105
PfoI	TCCNGGA	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	99, 284
PleI	GAGTC	2 cut(s)	316, 345
PpsI	GAGTC	2 cut(s)	316, 345
PpuMI	RGGWCCY	1 cut(s)	33
PsiI	TTATAA	1 cut(s)	701
Psp5II	RGGWCCY	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	4 cut(s)	4, 33, 52, 535
PspPPI	RGGWCCY	1 cut(s)	33
PstI	CTGCAG	2 cut(s)	94, 102
PsuI	RGATCY	1 cut(s)	449
RsaI	GTAC	2 cut(s)	356, 518
RsaNI	GTAC	2 cut(s)	355, 517
RseI	CAYNNNNRTG	2 cut(s)	543, 681
SaqAI	TTAA	3 cut(s)	180, 446, 733
SatI	GCNGC	2 cut(s)	98, 283
Sau3AI	GATC	2 cut(s)	131, 449
Sau96I	GGNCC	4 cut(s)	4, 33, 52, 535
SchI	GAGTC	2 cut(s)	317, 346
ScrFI	CCNGG	1 cut(s)	31
SetI	ASST	8 cut(s)	38, 65, 99, 143, 590, 699, 711, 729
SfaNI	GCATC	2 cut(s)	379, 685
SfcI	CTRYAG	2 cut(s)	90, 98
SfuI	TTCGAA	1 cut(s)	108
SinI	GGWCC	3 cut(s)	33, 52, 535
SmiMI	CAYNNNNRTG	2 cut(s)	543, 681
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
Sse9I	AATT	5 cut(s)	176, 470, 558, 660, 717
SspI	AATATT	1 cut(s)	13
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	29
TaqI	TCGA	1 cut(s)	108
TasI	AATT	5 cut(s)	176, 470, 558, 660, 717
TatI	WGTACW	1 cut(s)	516
TfiI	GAWTC	1 cut(s)	105
Tru1I	TTAA	3 cut(s)	180, 446, 733
Tru9I	TTAA	3 cut(s)	180, 446, 733
TscAI	CASTG	2 cut(s)	256, 356
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	2 cut(s)	97, 282
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	445
TspRI	CASTG	2 cut(s)	256, 356
Vha464I	CTTAAG	1 cut(s)	445
VpaK11BI	GGWCC	3 cut(s)	33, 52, 535
XapI	RAATTY	2 cut(s)	176, 558
XmnI	GAANNNNTTC	1 cut(s)	562
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.