Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006214.1

Orthogroup ID

OG0003989

Physical Location & Seq

Genomic Coordinates Reverse (-)

17532 .. 19248

Gene Structure 1717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006214.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

atggccctaaatattccttgtaagaaatccaggacctcgtgctttttcttggtcctcctcggctctgttctttgtattgtaactacatctgcagagctgcaaagattcgaacaccccacaaaagaagatggatcacttagctttctagtgcttggtgactggggaagaagaggagaatttaaccagtccgaagttgcctttcagatgggaagggttggagagaaacttgacatagattttgtagtttccactggagacaacttttatgataatggattgagcagcgaacacgatacggcatttgaggagtcatttaccaaaatctatacacaaaagagtctgctaaagcagtggtacagcattttaggcaaccatgattacaggggtgatgcagaggctcaactcagccccctgctaaggaagattgacagcagatggctttgcttaagatctttcattgttgacgcagaattagcagatattttgtttgtggacaccactccttttgtcaatatgtacttcacaagcaaagaggaccatacttatgattggcgaggaattccttctcgcaaggcttatattcaaaccttattgaaggatgttgagttggcattgaaaatgtcatctgcaaagtggaagatagttgttggacatcatgcaattagaagcattgggcatcatggtgatacacaggagcttataaagcaccttctcccaattcttcaggccaatgatgtagacttttacatgaatgggcatgatcattgcctagaacacatcagtgacatcaaaagcggaatacagtttctgacgagtggggcaggatcaaaagcatggagaggagacatgaagaatgaggagggtttgaacaaacaaggccagcgggtcaacttcttctatgatggtcaaggcttcatgtctgtgcagttgaatcccactcgagctgagatagctttctatgatgtgtttggcaacgtcatacattcttggattacttccaagctgcttcacccatctatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005623 GO:0006793 GO:0006796 GO:0006873 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009986 GO:0009987 GO:0010035 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042221 GO:0042493 GO:0042542 GO:0042578 GO:0042592 GO:0044237 GO:0044464 GO:0046677 GO:0048878 GO:0050801 GO:0050896 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

340

Amino Acids

38.66

Weight (kDa)

6.05

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17790
fragaria_vesca	FvH4_4g33010 FvH4_5g17770 FvH4_5g17770
malus_domestica	MD06G1233500.v1.1 MD14G1240300.v1.1 MD16G1013500.v1.1
prunus_persica	Prupe.1G337700_v2.0.a1 Prupe.5G237900_v2.0.a1
pyrus_communis	pycom06g20810 pycom14g20180 pycom16g01260
rosa_chinensis	RchiOBHm_Chr4g0442041 RchiOBHm_Chr7g0177841
rosa_laevigata	RLG00000005498 RLG00000006049
rosa_multiflora	Rmu_sc0002501.1_g000015 Rmu_sc0006214.1_g000006
rosa_roxburghii	Rroxscaffold_3G00275510 Rroxscaffold_5G00382960
rosa_rugosa	Rorug04G0338300 Rorug04G0338300 Rorug06G0410000
rosa_samantha	Rh4AG389900 Rh4BG403300 Rh4CG418400 Rh4DG396500 Rh7AG009500 Rh7BG009600 Rh7CG009700 Rh7DG009600
rosa_wichuraiana	Rw4G033690 Rw7G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	701
AccI	GTMKAC	1 cut(s)	738
AciI	CCGC	2 cut(s)	795, 883
AclWI	GGATC	2 cut(s)	139, 832
AcsI	RAATTY	2 cut(s)	176, 558
AcuI	CTGAAG	1 cut(s)	707
AfaI	GTAC	2 cut(s)	356, 518
AfiI	CCNNNNNNNGG	1 cut(s)	417
AflII	CTTAAG	1 cut(s)	445
AgsI	TTSAA	5 cut(s)	584, 595, 616, 868, 931
AjnI	CCWGG	1 cut(s)	29
AleI	CACNNNNGTG	1 cut(s)	780
AluBI	AGCT	6 cut(s)	97, 141, 697, 944, 953, 1003
AluI	AGCT	6 cut(s)	97, 141, 697, 944, 953, 1003
Alw26I	GTCTC	2 cut(s)	249, 837
AlwI	GGATC	2 cut(s)	139, 832
AlwNI	CAGNNNCTG	1 cut(s)	808
Ama87I	CYCGRG	1 cut(s)	939
AoxI	GGCC	3 cut(s)	3, 726, 877
ApeKI	GCWGC	3 cut(s)	97, 282, 1003
ApoI	RAATTY	2 cut(s)	176, 558
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
Asp700I	GAANNNNTTC	1 cut(s)	562
AspS9I	GGNCC	4 cut(s)	4, 33, 52, 535
AsuHPI	GGTGA	4 cut(s)	167, 398, 695, 1001
AsuII	TTCGAA	1 cut(s)	108
AvaI	CYCGRG	1 cut(s)	939
AvaII	GGWCC	3 cut(s)	33, 52, 535
BauI	CACGAG	1 cut(s)	37
BbvI	GCAGC	3 cut(s)	84, 294, 990
BccI	CCATC	5 cut(s)	122, 199, 429, 896, 1021
BceAI	ACGGC	1 cut(s)	312
BciT130I	CCWGG	1 cut(s)	31
BclI	TGATCA	1 cut(s)	760
BcoDI	GTCTC	2 cut(s)	249, 837
BfaI	CTAG	2 cut(s)	146, 770
BfmI	CTRYAG	1 cut(s)	90
BfrI	CTTAAG	1 cut(s)	445
BglII	AGATCT	1 cut(s)	449
BisI	GCNGC	3 cut(s)	98, 283, 1004
BlsI	GCNGC	3 cut(s)	99, 284, 1005
Bme1390I	CCNGG	1 cut(s)	31
Bme18I	GGWCC	3 cut(s)	33, 52, 535
BmeT110I	CYCGRG	1 cut(s)	939
BmgT120I	GGNCC	4 cut(s)	4, 33, 52, 535
BmrFI	CCNGG	1 cut(s)	31
BmrI	ACTGGG	1 cut(s)	169
BmsI	GCATC	2 cut(s)	379, 685
BmuI	ACTGGG	1 cut(s)	169
BpmI	CTGGAG	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	416
Bpu14I	TTCGAA	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	1 cut(s)	417
Bse1I	ACTGG	3 cut(s)	164, 184, 256
Bse3DI	GCAATG	1 cut(s)	763
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	58
BseGI	GGATG	1 cut(s)	604
BseLI	CCNNNNNNNGG	1 cut(s)	417
BseMI	GCAATG	1 cut(s)	763
BseMII	CTCAG	2 cut(s)	418, 936
BseNI	ACTGG	3 cut(s)	164, 184, 256
BseRI	GAGGAG	5 cut(s)	47, 186, 320, 855, 872
BseXI	GCAGC	3 cut(s)	84, 294, 990
BsgI	GTGCAG	1 cut(s)	944
BshFI	GGCC	3 cut(s)	5, 728, 879
BsiHKCI	CYCGRG	1 cut(s)	939
BslI	CCNNNNNNNGG	1 cut(s)	417
BsmAI	GTCTC	2 cut(s)	249, 837
BsnI	GGCC	3 cut(s)	5, 728, 879
BsoBI	CYCGRG	1 cut(s)	939
Bsp119I	TTCGAA	1 cut(s)	108
Bsp143I	GATC	4 cut(s)	131, 449, 760, 824
BspACI	CCGC	2 cut(s)	795, 883
BspANI	GGCC	3 cut(s)	5, 728, 879
BspCNI	CTCAG	2 cut(s)	417, 937
BspMAI	CTGCAG	1 cut(s)	94
BspPI	GGATC	2 cut(s)	139, 832
BspT104I	TTCGAA	1 cut(s)	108
BspTI	CTTAAG	1 cut(s)	445
BsrDI	GCAATG	1 cut(s)	763
BsrI	ACTGG	3 cut(s)	164, 184, 256
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	4 cut(s)	131, 449, 760, 824
BssSI	CACGAG	1 cut(s)	37
Bst2BI	CACGAG	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	804
Bst6I	CTCTTC	1 cut(s)	163
BstAFI	CTTAAG	1 cut(s)	445
BstBI	TTCGAA	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	881
BstDEI	CTNAG	4 cut(s)	137, 404, 416, 945
BstF5I	GGATG	1 cut(s)	604
BstKTI	GATC	4 cut(s)	134, 452, 763, 827
BstMAI	GTCTC	2 cut(s)	249, 837
BstMBI	GATC	4 cut(s)	131, 449, 760, 824
BstMWI	GCNNNNNNNGC	4 cut(s)	366, 473, 703, 950
BstNI	CCWGG	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	29
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	3 cut(s)	84, 294, 990
BstX2I	RGATCY	1 cut(s)	449
BstYI	RGATCY	1 cut(s)	449
BsuRI	GGCC	3 cut(s)	5, 728, 879
BtsCI	GGATG	1 cut(s)	604
BtsI	GCAGTG	1 cut(s)	356
BtsIMutI	CAGTG	3 cut(s)	249, 356, 787
Cac8I	GCNNGC	1 cut(s)	881
CaiI	CAGNNNCTG	1 cut(s)	808
Cfr13I	GGNCC	4 cut(s)	4, 33, 52, 535
CseI	GACGC	1 cut(s)	473
Csp6I	GTAC	2 cut(s)	355, 517
CspCI	CAANNNNNGTGG	2 cut(s)	487, 522
CviAII	CATG	8 cut(s)	374, 656, 680, 748, 758, 834, 847, 916
CviQI	GTAC	2 cut(s)	355, 517
DdeI	CTNAG	4 cut(s)	137, 404, 416, 945
DpnI	GATC	4 cut(s)	133, 451, 762, 826
DpnII	GATC	4 cut(s)	131, 449, 760, 824
Eam1104I	CTCTTC	1 cut(s)	163
EarI	CTCTTC	1 cut(s)	163
Eco47I	GGWCC	3 cut(s)	33, 52, 535
Eco57I	CTGAAG	1 cut(s)	707
Eco88I	CYCGRG	1 cut(s)	939
EcoO109I	RGGNCCY	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	558
EcoRII	CCWGG	1 cut(s)	29
FaeI	CATG	8 cut(s)	377, 659, 683, 751, 761, 837, 850, 919
FatI	CATG	8 cut(s)	373, 655, 679, 747, 757, 833, 846, 915
FauI	CCCGC	1 cut(s)	876
FbaI	TGATCA	1 cut(s)	760
FblI	GTMKAC	1 cut(s)	738
Fnu4HI	GCNGC	3 cut(s)	98, 283, 1004
FokI	GGATG	1 cut(s)	611
Fsp4HI	GCNGC	3 cut(s)	98, 283, 1004
FspBI	CTAG	2 cut(s)	146, 770
GluI	GCNGC	3 cut(s)	98, 283, 1004
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	3 cut(s)	5, 728, 879
HgaI	GACGC	1 cut(s)	473
Hin1II	CATG	8 cut(s)	377, 659, 683, 751, 761, 837, 850, 919
HincII	GTYRAC	2 cut(s)	463, 889
HindII	GTYRAC	2 cut(s)	463, 889
HinfI	GANTC	4 cut(s)	105, 308, 337, 931
HphI	GGTGA	4 cut(s)	167, 398, 695, 1001
Hpy166II	GTNNAC	4 cut(s)	463, 493, 739, 889
Hpy188I	TCNGA	3 cut(s)	190, 204, 810
Hpy8I	GTNNAC	4 cut(s)	463, 493, 739, 889
HpyAV	CCTTC	4 cut(s)	204, 573, 589, 719
HpyCH4III	ACNGT	1 cut(s)	804
HpyCH4IV	ACGT	1 cut(s)	975
HpyCH4V	TGCA	6 cut(s)	92, 100, 392, 629, 659, 925
HpyF10VI	GCNNNNNNNGC	4 cut(s)	366, 473, 703, 950
HpyF3I	CTNAG	4 cut(s)	137, 404, 416, 945
HpySE526I	ACGT	1 cut(s)	975
Hsp92II	CATG	8 cut(s)	377, 659, 683, 751, 761, 837, 850, 919
Ksp22I	TGATCA	1 cut(s)	760
Kzo9I	GATC	4 cut(s)	131, 449, 760, 824
LmnI	GCTCC	1 cut(s)	694
Lsp1109I	GCAGC	3 cut(s)	84, 294, 990
LweI	GCATC	2 cut(s)	379, 685
MaeI	CTAG	2 cut(s)	146, 770
MaeII	ACGT	1 cut(s)	975
MaeIII	GTNAC	3 cut(s)	79, 155, 782
MalI	GATC	4 cut(s)	133, 451, 762, 826
MboI	GATC	4 cut(s)	131, 449, 760, 824
MboII	GAAGA	8 cut(s)	137, 177, 180, 433, 649, 713, 862, 886
MflI	RGATCY	1 cut(s)	449
MluCI	AATT	5 cut(s)	176, 470, 558, 660, 717
MlyI	GAGTC	2 cut(s)	317, 346
MmeI	TCCRAC	2 cut(s)	196, 628
MroXI	GAANNNNTTC	1 cut(s)	562
MseI	TTAA	2 cut(s)	180, 446
MslI	CAYNNNNRTG	4 cut(s)	543, 681, 780, 920
MspA1I	CMGCKG	1 cut(s)	883
MspCI	CTTAAG	1 cut(s)	445
MspR9I	CCNGG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	4 cut(s)	366, 473, 703, 950
NdeII	GATC	4 cut(s)	131, 449, 760, 824
NlaIII	CATG	8 cut(s)	377, 659, 683, 751, 761, 837, 850, 919
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	2 cut(s)	155, 782
NspV	TTCGAA	1 cut(s)	108
OliI	CACNNNNGTG	1 cut(s)	780
PaeR7I	CTCGAG	1 cut(s)	939
PdmI	GAANNNNTTC	1 cut(s)	562
PfeI	GAWTC	2 cut(s)	105, 931
PfoI	TCCNGGA	1 cut(s)	29
PkrI	GCNGC	3 cut(s)	99, 284, 1005
PleI	GAGTC	2 cut(s)	316, 345
PpsI	GAGTC	2 cut(s)	316, 345
PpuMI	RGGWCCY	1 cut(s)	33
PsiI	TTATAA	1 cut(s)	701
Psp5II	RGGWCCY	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PspPI	GGNCC	4 cut(s)	4, 33, 52, 535
PspPPI	RGGWCCY	1 cut(s)	33
PspXI	VCTCGAGB	1 cut(s)	939
PstI	CTGCAG	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	808
PsuI	RGATCY	1 cut(s)	449
RsaI	GTAC	2 cut(s)	356, 518
RsaNI	GTAC	2 cut(s)	355, 517
RseI	CAYNNNNRTG	4 cut(s)	543, 681, 780, 920
SaqAI	TTAA	2 cut(s)	180, 446
SatI	GCNGC	3 cut(s)	98, 283, 1004
Sau3AI	GATC	4 cut(s)	131, 449, 760, 824
Sau96I	GGNCC	4 cut(s)	4, 33, 52, 535
SchI	GAGTC	2 cut(s)	317, 346
ScrFI	CCNGG	1 cut(s)	31
SfaNI	GCATC	2 cut(s)	379, 685
SfcI	CTRYAG	1 cut(s)	90
Sfr274I	CTCGAG	1 cut(s)	939
SfuI	TTCGAA	1 cut(s)	108
SinI	GGWCC	3 cut(s)	33, 52, 535
SlaI	CTCGAG	1 cut(s)	939
SmiMI	CAYNNNNRTG	4 cut(s)	543, 681, 780, 920
SmlI	CTYRAG	2 cut(s)	445, 939
SmoI	CTYRAG	2 cut(s)	445, 939
Sse9I	AATT	5 cut(s)	176, 470, 558, 660, 717
SsiI	CCGC	2 cut(s)	795, 883
SspI	AATATT	1 cut(s)	13
SspMI	CTAG	2 cut(s)	146, 770
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	804
TaiI	ACGT	1 cut(s)	978
TaqI	TCGA	2 cut(s)	108, 940
TasI	AATT	5 cut(s)	176, 470, 558, 660, 717
TatI	WGTACW	1 cut(s)	516
TfiI	GAWTC	2 cut(s)	105, 931
Tru1I	TTAA	2 cut(s)	180, 446
Tru9I	TTAA	2 cut(s)	180, 446
TscAI	CASTG	3 cut(s)	256, 356, 787
TseFI	GTSAC	2 cut(s)	155, 782
TseI	GCWGC	3 cut(s)	97, 282, 1003
Tsp45I	GTSAC	2 cut(s)	155, 782
TspDTI	ATGAA	4 cut(s)	445, 764, 863, 904
TspRI	CASTG	3 cut(s)	256, 356, 787
Vha464I	CTTAAG	1 cut(s)	445
VpaK11BI	GGWCC	3 cut(s)	33, 52, 535
XapI	RAATTY	2 cut(s)	176, 558
XhoI	CTCGAG	1 cut(s)	939
XmiI	GTMKAC	1 cut(s)	738
XmnI	GAANNNNTTC	1 cut(s)	562
XspI	CTAG	2 cut(s)	146, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.