Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002501.1

Orthogroup ID

OG0003989

Physical Location & Seq

Genomic Coordinates Reverse (-)

64988 .. 66661

Gene Structure 1674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002501.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

atgatacttagcaacttagccatggcttgtcttagttatgaaagaaccagagcttcacgccttcatttggttttggttgtgttactgtattgcatttcttcggagatcagctctagttttgcagagcttcagaggtttgaacacacaccgaaagatgatggctcgattagatttctggtagttggagattggggcagaagagggttctataaccaatctaaagttgcttggcagatgggaaggattggagaaaagttggatatagattttgtgatatcgacgggagataatttctatggggatggattaaagggggtaaatgatcttgcatttttggattcctttaaaaacatttacacagctaagagcctgcaaaaacagtggtatagtgttttaggaaatcatgactataggggtaatacagaggcacaattgagccctgccctccgaaagattgatagtcgatggctttgcctgagatcttttattgtcaatgctgcagaaattgcagaattttttttcgtggacactactccatttgcgaccaaatacataactgacaaaaagcatcaatatgattggagcgcattgaggaagtcgagtgccaagtggaagatagtgattggtcaccatacaatcagaagtgctggacatcacggcgagacacaggagctggtgaggcacctcttgccaatactcaaggctcataatgttgatatgtacatgaatggacatgaccactgcctgcagcacattagcagcctcaatagtccgattcagtatttcacaagcggagcgggttcgaaagcatggaggggtgatactaaggaatacaatagtgaggccatgaagttcttccatgatggtcaaggtttcatgtctgtgaacttgacccgatcggatgctcttatcgtgttttatgacgttttaggcagggttttgcatacatggaagctcaataagcagcttcactccgctttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

327

Amino Acids

37.41

Weight (kDa)

9.0

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17790
fragaria_vesca	FvH4_4g33010 FvH4_5g17770 FvH4_5g17770
malus_domestica	MD06G1233500.v1.1 MD14G1240300.v1.1 MD16G1013500.v1.1
prunus_persica	Prupe.1G337700_v2.0.a1 Prupe.5G237900_v2.0.a1
pyrus_communis	pycom06g20810 pycom14g20180 pycom16g01260
rosa_chinensis	RchiOBHm_Chr4g0442041 RchiOBHm_Chr7g0177841
rosa_laevigata	RLG00000005498 RLG00000006049
rosa_multiflora	Rmu_sc0002501.1_g000015 Rmu_sc0006214.1_g000006
rosa_roxburghii	Rroxscaffold_3G00275510 Rroxscaffold_5G00382960
rosa_rugosa	Rorug04G0338300 Rorug04G0338300 Rorug06G0410000
rosa_samantha	Rh4AG389900 Rh4BG403300 Rh4CG418400 Rh4DG396500 Rh7AG009500 Rh7BG009600 Rh7CG009700 Rh7DG009600
rosa_wichuraiana	Rw4G033690 Rw7G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	681
AccBSI	CCGCTC	1 cut(s)	797
AciI	CCGC	3 cut(s)	792, 797, 975
AcsI	RAATTY	1 cut(s)	512
AcuI	CTGAAG	1 cut(s)	113
AfaI	GTAC	1 cut(s)	722
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	140
AluBI	AGCT	7 cut(s)	53, 111, 127, 362, 673, 955, 967
AluI	AGCT	7 cut(s)	53, 111, 127, 362, 673, 955, 967
Alw26I	GTCTC	1 cut(s)	656
AlwNI	CAGNNNCTG	1 cut(s)	673
AoxI	GGCC	1 cut(s)	843
ApeKI	GCWGC	4 cut(s)	497, 748, 759, 964
ApoI	RAATTY	1 cut(s)	512
Asp700I	GAANNNNTTC	1 cut(s)	854
AspLEI	GCGC	1 cut(s)	587
AsuHPI	GGTGA	3 cut(s)	620, 688, 830
AsuII	TTCGAA	1 cut(s)	803
BanI	GGYRCC	1 cut(s)	681
BanII	GRGCYC	1 cut(s)	440
BbvI	GCAGC	4 cut(s)	484, 760, 771, 976
BccI	CCATC	5 cut(s)	152, 229, 296, 459, 857
BceAI	ACGGC	1 cut(s)	673
BcgI	CGANNNNNNTGC	2 cut(s)	453, 487
BcoDI	GTCTC	1 cut(s)	656
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	3 cut(s)	409, 498, 746
BglII	AGATCT	1 cut(s)	479
BisI	GCNGC	4 cut(s)	498, 749, 760, 965
BlsI	GCNGC	4 cut(s)	499, 750, 761, 966
BmiI	GGNNCC	1 cut(s)	683
BmsI	GCATC	2 cut(s)	577, 892
BplI	GAGNNNNNCTC	2 cut(s)	95, 127
Bpu14I	TTCGAA	1 cut(s)	803
BpuEI	CTTGAG	1 cut(s)	683
BsaJI	CCNNGG	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	2 cut(s)	307, 907
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	467
BseXI	GCAGC	4 cut(s)	484, 760, 771, 976
Bsh1285I	CGRYCG	1 cut(s)	899
BshFI	GGCC	1 cut(s)	845
BshNI	GGYRCC	1 cut(s)	681
BsiEI	CGRYCG	1 cut(s)	899
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	656
BsnI	GGCC	1 cut(s)	845
Bsp119I	TTCGAA	1 cut(s)	803
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp1407I	TGTACA	1 cut(s)	720
Bsp143I	GATC	4 cut(s)	105, 322, 479, 896
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	3 cut(s)	792, 797, 975
BspANI	GGCC	1 cut(s)	845
BspCNI	CTCAG	1 cut(s)	468
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	683
BspMAI	CTGCAG	2 cut(s)	502, 750
BspT104I	TTCGAA	1 cut(s)	803
BspT107I	GGYRCC	1 cut(s)	681
BsrBI	CCGCTC	1 cut(s)	797
BsrGI	TGTACA	1 cut(s)	720
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	4 cut(s)	105, 322, 479, 896
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	2 cut(s)	87, 381
Bst6I	CTCTTC	1 cut(s)	193
BstAPI	GCANNNNNTGC	2 cut(s)	506, 688
BstAUI	TGTACA	1 cut(s)	720
BstBI	TTCGAA	1 cut(s)	803
BstC8I	GCNNGC	2 cut(s)	371, 746
BstDEI	CTNAG	6 cut(s)	8, 16, 32, 363, 476, 825
BstDSI	CCRYGG	1 cut(s)	21
BstEII	GGTNACC	1 cut(s)	626
BstF5I	GGATG	2 cut(s)	307, 907
BstHHI	GCGC	1 cut(s)	587
BstKTI	GATC	4 cut(s)	108, 325, 482, 899
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	4 cut(s)	105, 322, 479, 896
BstMCI	CGRYCG	1 cut(s)	899
BstMWI	GCNNNNNNNGC	4 cut(s)	506, 679, 688, 961
BstPI	GGTNACC	1 cut(s)	626
BstSFI	CTRYAG	3 cut(s)	409, 498, 746
BstV1I	GCAGC	4 cut(s)	484, 760, 771, 976
BstX2I	RGATCY	1 cut(s)	479
BstYI	RGATCY	1 cut(s)	479
BsuRI	GGCC	1 cut(s)	845
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	307, 907
BtsI	GCAGTG	1 cut(s)	739
BtsIMutI	CAGTG	2 cut(s)	386, 739
Cac8I	GCNNGC	2 cut(s)	371, 746
CaiI	CAGNNNCTG	1 cut(s)	673
CciI	TCATGA	1 cut(s)	403
CfoI	GCGC	1 cut(s)	587
Csp6I	GTAC	1 cut(s)	721
CspCI	CAANNNNNGTGG	2 cut(s)	362, 397
CviAII	CATG	9 cut(s)	22, 404, 724, 734, 810, 847, 860, 877, 948
CviQI	GTAC	1 cut(s)	721
DdeI	CTNAG	6 cut(s)	8, 16, 32, 363, 476, 825
DpnI	GATC	4 cut(s)	107, 324, 481, 898
DpnII	GATC	4 cut(s)	105, 322, 479, 896
DraI	TTTAAA	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	440
Eco32I	GATATC	1 cut(s)	276
Eco57I	CTGAAG	1 cut(s)	113
Eco91I	GGTNACC	1 cut(s)	626
EcoO65I	GGTNACC	1 cut(s)	626
EcoRV	GATATC	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	9 cut(s)	25, 407, 727, 737, 813, 850, 863, 880, 951
FatI	CATG	9 cut(s)	21, 403, 723, 733, 809, 846, 859, 876, 947
FauI	CCCGC	1 cut(s)	790
Fnu4HI	GCNGC	4 cut(s)	498, 749, 760, 965
FokI	GGATG	2 cut(s)	314, 914
FriOI	GRGCYC	1 cut(s)	440
Fsp4HI	GCNGC	4 cut(s)	498, 749, 760, 965
FspBI	CTAG	1 cut(s)	114
GlaI	GCGC	1 cut(s)	586
GluI	GCNGC	4 cut(s)	498, 749, 760, 965
HaeIII	GGCC	1 cut(s)	845
HhaI	GCGC	1 cut(s)	587
Hin1II	CATG	9 cut(s)	25, 407, 727, 737, 813, 850, 863, 880, 951
Hin6I	GCGC	1 cut(s)	585
HinP1I	GCGC	1 cut(s)	585
HinfI	GANTC	2 cut(s)	338, 775
HphI	GGTGA	3 cut(s)	620, 688, 830
Hpy166II	GTNNAC	2 cut(s)	526, 886
Hpy188I	TCNGA	6 cut(s)	103, 132, 449, 641, 774, 901
Hpy188III	TCNNGA	1 cut(s)	404
Hpy8I	GTNNAC	2 cut(s)	526, 886
Hpy99I	CGWCG	1 cut(s)	283
HpyAV	CCTTC	2 cut(s)	71, 234
HpyCH4III	ACNGT	2 cut(s)	87, 381
HpyCH4IV	ACGT	1 cut(s)	924
HpyCH4V	TGCA	8 cut(s)	93, 122, 329, 373, 500, 509, 748, 943
HpyF10VI	GCNNNNNNNGC	4 cut(s)	506, 679, 688, 961
HpyF3I	CTNAG	6 cut(s)	8, 16, 32, 363, 476, 825
HpySE526I	ACGT	1 cut(s)	924
Hsp92II	CATG	9 cut(s)	25, 407, 727, 737, 813, 850, 863, 880, 951
HspAI	GCGC	1 cut(s)	585
Kzo9I	GATC	4 cut(s)	105, 322, 479, 896
LmnI	GCTCC	3 cut(s)	582, 670, 794
Lsp1109I	GCAGC	4 cut(s)	484, 760, 771, 976
LweI	GCATC	2 cut(s)	577, 892
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	1 cut(s)	924
MaeIII	GTNAC	2 cut(s)	81, 626
MalI	GATC	4 cut(s)	107, 324, 481, 898
MbiI	CCGCTC	1 cut(s)	797
MboI	GATC	4 cut(s)	105, 322, 479, 896
MboII	GAAGA	4 cut(s)	90, 210, 625, 847
MfeI	CAATTG	1 cut(s)	431
MflI	RGATCY	1 cut(s)	479
MhlI	GDGCHC	1 cut(s)	440
MluCI	AATT	4 cut(s)	289, 431, 504, 512
MmeI	TCCRAC	2 cut(s)	163, 237
MroXI	GAANNNNTTC	1 cut(s)	854
MseI	TTAA	2 cut(s)	308, 345
MslI	CAYNNNNRTG	2 cut(s)	573, 881
MunI	CAATTG	1 cut(s)	431
MwoI	GCNNNNNNNGC	4 cut(s)	506, 679, 688, 961
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	4 cut(s)	105, 322, 479, 896
NlaIII	CATG	9 cut(s)	25, 407, 727, 737, 813, 850, 863, 880, 951
NlaIV	GGNNCC	1 cut(s)	683
NmuCI	GTSAC	1 cut(s)	626
NspV	TTCGAA	1 cut(s)	803
PagI	TCATGA	1 cut(s)	403
PdmI	GAANNNNTTC	1 cut(s)	854
PfeI	GAWTC	2 cut(s)	338, 775
PkrI	GCNGC	4 cut(s)	499, 750, 761, 966
Ple19I	CGATCG	1 cut(s)	899
PspEI	GGTNACC	1 cut(s)	626
PspN4I	GGNNCC	1 cut(s)	683
PstI	CTGCAG	2 cut(s)	502, 750
PstNI	CAGNNNCTG	1 cut(s)	673
PsuI	RGATCY	1 cut(s)	479
PvuI	CGATCG	1 cut(s)	899
RsaI	GTAC	1 cut(s)	722
RsaNI	GTAC	1 cut(s)	721
RseI	CAYNNNNRTG	2 cut(s)	573, 881
SaqAI	TTAA	2 cut(s)	308, 345
SatI	GCNGC	4 cut(s)	498, 749, 760, 965
Sau3AI	GATC	4 cut(s)	105, 322, 479, 896
SduI	GDGCHC	1 cut(s)	440
SfaNI	GCATC	2 cut(s)	577, 892
SfcI	CTRYAG	3 cut(s)	409, 498, 746
SfuI	TTCGAA	1 cut(s)	803
SmiMI	CAYNNNNRTG	2 cut(s)	573, 881
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
Sse9I	AATT	4 cut(s)	289, 431, 504, 512
SsiI	CCGC	3 cut(s)	792, 797, 975
SspMI	CTAG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	87, 381
TaiI	ACGT	1 cut(s)	927
TaqI	TCGA	5 cut(s)	164, 278, 463, 599, 803
TasI	AATT	4 cut(s)	289, 431, 504, 512
TatI	WGTACW	1 cut(s)	720
TfiI	GAWTC	2 cut(s)	338, 775
Tru1I	TTAA	2 cut(s)	308, 345
Tru9I	TTAA	2 cut(s)	308, 345
TscAI	CASTG	2 cut(s)	386, 746
TseFI	GTSAC	1 cut(s)	626
TseI	GCWGC	4 cut(s)	497, 748, 759, 964
Tsp45I	GTSAC	1 cut(s)	626
TspDTI	ATGAA	5 cut(s)	53, 54, 740, 863, 865
TspRI	CASTG	2 cut(s)	386, 746
XapI	RAATTY	1 cut(s)	512
XmnI	GAANNNNTTC	1 cut(s)	854
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.