Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003989

Physical Location & Seq

Genomic Coordinates Reverse (-)

23712807 .. 23714678

Gene Structure 1872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20810.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCTATTCCTCGAAAAAATTCTAGGACCTCTATTTTTTTCTCGATCCTCAGTTTTGCCCTGTGTCTGGTAATTACATCTACGGAGCTTCAGAGATTCGACCACCCCGCCAAACAAGATGGATCACTCAGTTTCTTGGTGGTTGGGGACTGGGGAAGAAGAGGAGATTTCAACCAATCTCAAGTTGCCCTTCAGATGGGAAAGATTGGAGAGAAACTCGACATAGATTTCGTGGTGTCGACGGGAGATAACTTTTACGACAATGGACTCACCAGCGAGCATGACACAGCATTTGAAGAGTCGTTTACCAAAATCTATACAGAAAAGAGCCTGCAGAAGCAGTGGTATAGCGTGTTGGGAAACCATGATTACAGGGGAGATGCAGAGGCTCAGCTGAGCCCCCTTCTGCGGAAAATCGATAGCAGATGGCTTTGCTTGAGGTCTTTCATTGTGAATACAGAATTGGCAGAGCTTTTCTTCGTCGACACCACGCCTTTGGCGGATAAGTACTTCACAAACGCAGACGAGCATACTTACGATTGGCGCGGCATTGCCCCTCGGAAGGTTTATATTGCAAACTTGTTGAAGGATGTGGAGTTGGCATTGAAGAAATCCTCCGCAAAGTGGAAGATTGTTGTTGGACACCATGCAATTAGAAGCGTAGGGCATCATGGTGACACACAGGAACTTATAAACCAGCTTCTCCCAATCCTTCGGGTCAATGACGTCGATTTTTACATGAACGGGCACGATCATTGCCTAGAACACATTAGTGACTTAGAGAGCCCGATACAATTTCTAACAAGCGGAGCAGGGTCTAAAGCTTGGAGGGGAGATGTTAAGGAGCTGAACAAAGAAGGGCTCAACTTCTTTTATGATGGTCAAGGCTTCATGTCTGTGAAGTTGAATCCCACAGATGCAGAGATTGCATTCTATGATGTTTTTGGCAAGGTTTTACATAGACTGAATGCTTCCAAGCAGCTTCACCCCTCCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005623 GO:0006793 GO:0006796 GO:0006873 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009986 GO:0009987 GO:0010035 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042221 GO:0042493 GO:0042542 GO:0042578 GO:0042592 GO:0044237 GO:0044464 GO:0046677 GO:0048878 GO:0050801 GO:0050896 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

333

Amino Acids

37.71

Weight (kDa)

6.0

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17790
fragaria_vesca	FvH4_4g33010 FvH4_5g17770 FvH4_5g17770
malus_domestica	MD06G1233500.v1.1 MD14G1240300.v1.1 MD16G1013500.v1.1
prunus_persica	Prupe.1G337700_v2.0.a1 Prupe.5G237900_v2.0.a1
pyrus_communis	pycom06g20810 pycom14g20180 pycom16g01260
rosa_chinensis	RchiOBHm_Chr4g0442041 RchiOBHm_Chr7g0177841
rosa_laevigata	RLG00000005498 RLG00000006049
rosa_multiflora	Rmu_sc0002501.1_g000015 Rmu_sc0006214.1_g000006
rosa_roxburghii	Rroxscaffold_3G00275510 Rroxscaffold_5G00382960
rosa_rugosa	Rorug04G0338300 Rorug04G0338300 Rorug06G0410000
rosa_samantha	Rh4AG389900 Rh4BG403300 Rh4CG418400 Rh4DG396500 Rh7AG009500 Rh7BG009600 Rh7CG009700 Rh7DG009600
rosa_wichuraiana	Rw4G033690 Rw7G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	692
AatII	GACGTC	1 cut(s)	729
AccI	GTMKAC	2 cut(s)	239, 483
AccII	CGCG	1 cut(s)	546
AciI	CCGC	6 cut(s)	108, 409, 500, 546, 618, 807
AclWI	GGATC	2 cut(s)	40, 130
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	2 cut(s)	74, 176
AcyI	GRCGYC	1 cut(s)	726
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	5 cut(s)	67, 196, 408, 562, 624
AgsI	TTSAA	5 cut(s)	172, 296, 586, 607, 907
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AleI	CACNNNNGTG	1 cut(s)	771
AluBI	AGCT	7 cut(s)	88, 394, 472, 700, 824, 847, 982
AluI	AGCT	7 cut(s)	88, 394, 472, 700, 824, 847, 982
AlwI	GGATC	2 cut(s)	40, 130
ApeKI	GCWGC	1 cut(s)	979
ApoI	RAATTY	1 cut(s)	19
ArsI	GACNNNNNNTTYG	4 cut(s)	212, 244, 275, 307
Asp700I	GAANNNNTTC	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	546
AspS9I	GGNCC	1 cut(s)	27
AsuHPI	GGTGA	3 cut(s)	262, 686, 977
AvaII	GGWCC	1 cut(s)	27
BaeGI	GKGCMC	1 cut(s)	750
BanII	GRGCYC	3 cut(s)	401, 788, 864
BbvI	GCAGC	1 cut(s)	991
BccI	CCATC	4 cut(s)	113, 190, 420, 872
BfaI	CTAG	2 cut(s)	24, 761
BfmI	CTRYAG	1 cut(s)	332
BisI	GCNGC	2 cut(s)	547, 980
BlpI	GCTNAGC	2 cut(s)	390, 395
BlsI	GCNGC	2 cut(s)	548, 981
BmcAI	AGTACT	1 cut(s)	509
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	27
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	3 cut(s)	370, 676, 907
BmuI	ACTGGG	1 cut(s)	160
BplI	GAGNNNNNCTC	2 cut(s)	201, 233
Bpu1102I	GCTNAGC	2 cut(s)	390, 395
BpuEI	CTTGAG	2 cut(s)	165, 457
Bsa29I	ATCGAT	1 cut(s)	417
BsaHI	GRCGYC	1 cut(s)	726
BsaJI	CCNNGG	1 cut(s)	557
Bsc4I	CCNNNNNNNGG	5 cut(s)	67, 196, 408, 562, 624
Bse1I	ACTGG	1 cut(s)	155
Bse3DI	GCAATG	2 cut(s)	549, 754
BseCI	ATCGAT	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	557
BseGI	GGATG	1 cut(s)	595
BseLI	CCNNNNNNNGG	5 cut(s)	67, 196, 408, 562, 624
BseMI	GCAATG	2 cut(s)	549, 754
BseMII	CTCAG	4 cut(s)	64, 142, 386, 404
BseNI	ACTGG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	177
BseSI	GKGCMC	1 cut(s)	750
BseXI	GCAGC	1 cut(s)	991
Bsh1236I	CGCG	1 cut(s)	546
BshVI	ATCGAT	1 cut(s)	417
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	5 cut(s)	67, 196, 408, 562, 624
BsmFI	GGGAC	1 cut(s)	161
BsmI	GAATGC	2 cut(s)	929, 973
Bsp1286I	GDGCHC	4 cut(s)	401, 750, 788, 864
Bsp143I	GATC	3 cut(s)	45, 122, 751
Bsp1720I	GCTNAGC	2 cut(s)	390, 395
BspACI	CCGC	6 cut(s)	108, 409, 500, 546, 618, 807
BspCNI	CTCAG	4 cut(s)	63, 141, 387, 403
BspDI	ATCGAT	1 cut(s)	417
BspFNI	CGCG	1 cut(s)	546
BspMAI	CTGCAG	1 cut(s)	336
BspPI	GGATC	2 cut(s)	40, 130
BsrDI	GCAATG	2 cut(s)	549, 754
BsrI	ACTGG	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	557
BssMI	GATC	3 cut(s)	45, 122, 751
BssNI	GRCGYC	1 cut(s)	726
Bst6I	CTCTTC	2 cut(s)	154, 291
BstACI	GRCGYC	1 cut(s)	726
BstAPI	GCANNNNNTGC	1 cut(s)	926
BstC8I	GCNNGC	2 cut(s)	278, 332
BstDEI	CTNAG	5 cut(s)	50, 128, 390, 395, 778
BstF5I	GGATG	1 cut(s)	595
BstFNI	CGCG	1 cut(s)	546
BstHHI	GCGC	1 cut(s)	546
BstKTI	GATC	3 cut(s)	48, 125, 754
BstMBI	GATC	3 cut(s)	45, 122, 751
BstMWI	GCNNNNNNNGC	1 cut(s)	926
BstSFI	CTRYAG	1 cut(s)	332
BstSLI	GKGCMC	1 cut(s)	750
BstUI	CGCG	1 cut(s)	546
BstV1I	GCAGC	1 cut(s)	991
BstXI	CCANNNNNNTGG	1 cut(s)	496
Bsu15I	ATCGAT	1 cut(s)	417
BsuTUI	ATCGAT	1 cut(s)	417
BtsCI	GGATG	1 cut(s)	595
BtsI	GCAGTG	1 cut(s)	347
BtsIMutI	CAGTG	1 cut(s)	347
Cac8I	GCNNGC	2 cut(s)	278, 332
CfoI	GCGC	1 cut(s)	546
Cfr13I	GGNCC	1 cut(s)	27
ClaI	ATCGAT	1 cut(s)	417
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	6 cut(s)	281, 365, 647, 671, 739, 892
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	5 cut(s)	50, 128, 390, 395, 778
DpnI	GATC	3 cut(s)	47, 124, 753
DpnII	GATC	3 cut(s)	45, 122, 751
Eam1104I	CTCTTC	2 cut(s)	154, 291
EarI	CTCTTC	2 cut(s)	154, 291
EciI	GGCGGA	1 cut(s)	515
Eco24I	GRGCYC	3 cut(s)	401, 788, 864
Eco47I	GGWCC	1 cut(s)	27
Eco57I	CTGAAG	2 cut(s)	74, 176
EcoO109I	RGGNCCY	1 cut(s)	27
EcoT38I	GRGCYC	3 cut(s)	401, 788, 864
FaeI	CATG	6 cut(s)	284, 368, 650, 674, 742, 895
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	6 cut(s)	280, 364, 646, 670, 738, 891
FauI	CCCGC	1 cut(s)	115
FblI	GTMKAC	2 cut(s)	239, 483
Fnu4HI	GCNGC	2 cut(s)	547, 980
FokI	GGATG	1 cut(s)	602
FriOI	GRGCYC	3 cut(s)	401, 788, 864
Fsp4HI	GCNGC	2 cut(s)	547, 980
FspBI	CTAG	2 cut(s)	24, 761
GlaI	GCGC	1 cut(s)	545
GluI	GCNGC	2 cut(s)	547, 980
HhaI	GCGC	1 cut(s)	546
Hin1I	GRCGYC	1 cut(s)	726
Hin1II	CATG	6 cut(s)	284, 368, 650, 674, 742, 895
Hin6I	GCGC	1 cut(s)	544
HinP1I	GCGC	1 cut(s)	544
HincII	GTYRAC	2 cut(s)	240, 484
HindII	GTYRAC	2 cut(s)	240, 484
HindIII	AAGCTT	1 cut(s)	822
HinfI	GANTC	4 cut(s)	96, 267, 299, 907
HphI	GGTGA	3 cut(s)	262, 686, 977
Hpy166II	GTNNAC	3 cut(s)	240, 306, 484
Hpy188I	TCNGA	3 cut(s)	93, 195, 561
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	3 cut(s)	240, 306, 484
Hpy99I	CGWCG	3 cut(s)	244, 485, 731
HpyAV	CCTTC	6 cut(s)	200, 413, 556, 580, 722, 851
HpyCH4IV	ACGT	1 cut(s)	726
HpyCH4V	TGCA	6 cut(s)	334, 383, 575, 650, 920, 929
HpyF10VI	GCNNNNNNNGC	1 cut(s)	926
HpyF3I	CTNAG	5 cut(s)	50, 128, 390, 395, 778
HpySE526I	ACGT	1 cut(s)	726
Hsp92I	GRCGYC	1 cut(s)	726
Hsp92II	CATG	6 cut(s)	284, 368, 650, 674, 742, 895
HspAI	GCGC	1 cut(s)	544
Kzo9I	GATC	3 cut(s)	45, 122, 751
LmnI	GCTCC	3 cut(s)	85, 809, 844
LpnPI	CCDG	9 cut(s)	53, 74, 136, 286, 344, 358, 668, 710, 798
Lsp1109I	GCAGC	1 cut(s)	991
LweI	GCATC	3 cut(s)	370, 676, 907
MaeI	CTAG	2 cut(s)	24, 761
MaeII	ACGT	1 cut(s)	726
MaeIII	GTNAC	2 cut(s)	674, 773
MalI	GATC	3 cut(s)	47, 124, 753
MboI	GATC	3 cut(s)	45, 122, 751
MboII	GAAGA	6 cut(s)	168, 171, 308, 469, 619, 640
MhlI	GDGCHC	4 cut(s)	401, 750, 788, 864
MluCI	AATT	5 cut(s)	19, 72, 461, 651, 794
MlyI	GAGTC	2 cut(s)	261, 308
MmeI	TCCRAC	1 cut(s)	619
MnlI	CCTC	9 cut(s)	21, 40, 59, 155, 379, 432, 567, 625, 822
MroXI	GAANNNNTTC	1 cut(s)	19
MseI	TTAA	1 cut(s)	840
MslI	CAYNNNNRTG	3 cut(s)	672, 771, 896
MspA1I	CMGCKG	1 cut(s)	394
Mva1269I	GAATGC	2 cut(s)	929, 973
MvnI	CGCG	1 cut(s)	546
MwoI	GCNNNNNNNGC	1 cut(s)	926
NdeII	GATC	3 cut(s)	45, 122, 751
NlaIII	CATG	6 cut(s)	284, 368, 650, 674, 742, 895
NmuCI	GTSAC	2 cut(s)	674, 773
OliI	CACNNNNGTG	1 cut(s)	771
PctI	GAATGC	2 cut(s)	929, 973
PdmI	GAANNNNTTC	1 cut(s)	19
PfeI	GAWTC	2 cut(s)	96, 907
PkrI	GCNGC	2 cut(s)	548, 981
PleI	GAGTC	2 cut(s)	261, 307
PpsI	GAGTC	2 cut(s)	261, 307
PpuMI	RGGWCCY	1 cut(s)	27
PsiI	TTATAA	1 cut(s)	692
Psp5II	RGGWCCY	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	27
PspPPI	RGGWCCY	1 cut(s)	27
PstI	CTGCAG	1 cut(s)	336
PvuII	CAGCTG	1 cut(s)	394
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
RseI	CAYNNNNRTG	3 cut(s)	672, 771, 896
SalI	GTCGAC	2 cut(s)	238, 482
SaqAI	TTAA	1 cut(s)	840
SatI	GCNGC	2 cut(s)	547, 980
Sau3AI	GATC	3 cut(s)	45, 122, 751
Sau96I	GGNCC	1 cut(s)	27
ScaI	AGTACT	1 cut(s)	509
SchI	GAGTC	2 cut(s)	261, 308
SduI	GDGCHC	4 cut(s)	401, 750, 788, 864
SfaNI	GCATC	3 cut(s)	370, 676, 907
SfcI	CTRYAG	1 cut(s)	332
SinI	GGWCC	1 cut(s)	27
SmiMI	CAYNNNNRTG	3 cut(s)	672, 771, 896
SmlI	CTYRAG	2 cut(s)	180, 436
SmoI	CTYRAG	2 cut(s)	180, 436
Sse9I	AATT	5 cut(s)	19, 72, 461, 651, 794
SsiI	CCGC	6 cut(s)	108, 409, 500, 546, 618, 807
SspMI	CTAG	2 cut(s)	24, 761
TaiI	ACGT	1 cut(s)	729
TaqI	TCGA	8 cut(s)	13, 44, 99, 219, 239, 417, 483, 729
TasI	AATT	5 cut(s)	19, 72, 461, 651, 794
TatI	WGTACW	1 cut(s)	507
TauI	GCSGC	1 cut(s)	549
TfiI	GAWTC	2 cut(s)	96, 907
Tru1I	TTAA	1 cut(s)	840
Tru9I	TTAA	1 cut(s)	840
TscAI	CASTG	1 cut(s)	347
TseFI	GTSAC	2 cut(s)	674, 773
TseI	GCWGC	1 cut(s)	979
Tsp45I	GTSAC	2 cut(s)	674, 773
TspDTI	ATGAA	3 cut(s)	436, 755, 880
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	27
XapI	RAATTY	1 cut(s)	19
XmiI	GTMKAC	2 cut(s)	239, 483
XmnI	GAANNNNTTC	1 cut(s)	19
XspI	CTAG	2 cut(s)	24, 761
ZraI	GACGTC	1 cut(s)	727
ZrmI	AGTACT	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.