AT3G17800

mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stem

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004076
Physical Location & Seq
Reverse (-)
6091110 .. 6093151
2042 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17800.1

Sequence Viewer

Length: 1266 bp
ATGGATGCCTTGACCTCGAGTTTGGTTCGATCTCCCATCGTACCATCGAGAACTTCCGACAACGGTTCTGGATCTATGTTCCTTACCGCCAGTGGCCCTGGATTCACGCGTTCTGGTTCTTCAAGACTTCAACTTCGTTTAAGGCAAAACGCGTCTGCTAGATCCTCAAGATCATTACAGAGCTTAACAACGACTGCTAAAACTCGGAGAAGTTTTGTGGTTAGAGCTTCTTCAGCGTCTAATGATGCTTCATCTGGTTCTTCCCCCAAACCGATCGCTCCGCTCCAGCTGCAATCGCCTGCTGGTCAGTTTCTGTCTCAGATTTTGGTGAGCCATCCTCATCTTGTGCCTGCAGCTGTTGAACAGCAGCTTGAGCAGCTTCAAACTGATCGGGACTCTCAGGGACAGAACAAAGATTCAGCGTCTGTACCTGGAACCGACATCGTTCTCTACAGGAGAATTGCGGAGTTGAAGGAAAACGAGAGAAGAAGAACATTGGAAGAGATTTTGTATGCATTGGTGGTTCAAAAGTTCATGGAAGCTAACGTATCACTTGTACCTTCAGTAAGCCCATCTTCAGATCCGTCTGGTCGGGTTGATACTTGGCCGACCAAAGTGGAGAAACTCGAGCGGCTTCACTCGCCCGAGATGTACGAGATGATTCACAACCATCTTGCCTTGATTCTTGGAAGCAGAATGGGTGATCTGAACTCTGTTGCACAGATAAGCAAGCTCAGAGTTGGCCAAGTTTACGCTGCTTCTGTGATGTATGGATATTTCTTGAAGAGGGTGGACCAAAGGTTTCAGCTTGAGAAGACGATGAAGATTCTTCCGGGTGGGTCGGATGAAAGTAAAACAAGCGTTGAGCAAGCCGAGGGGACGGCAACATATCAGGCGGCTGTATCGTCTCACCCAGAGGTTGGTGCATTTGCGGGCGGAGTTAGTGCTAAGGGCTTCGGCAGCGAGATTAAACCATCCCGATTAAGGTCATATGTGATGTCATTTGATGCGGAGACGCTGCAGAGATACGCCACTATAAGATCAAGAGAAGCAGTTGGAATCATCGAGAAGCACACAGAGGCATTGTTTGGTAAGCCTGAGATTGTAATAACACCGGAGGGCACAGTCGATTCATCGAAGGACGAACAGATAAAGATCAGCTTCGGTGGAATGAAGAGGCTCGTCTTGGAGGCAGTTACTTTCGGGTCGTTCCTTTGGGATGTTGAGAGCCATGTAGATGCGAGGTACCACTTTGTATTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0006950 GO:0006979 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0010035 GO:0010193 GO:0010224 GO:0042221 GO:0042493 GO:0046677 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

421

Amino Acids

46.07

Weight (kDa)

9.2

Isoelectric Point (pI)

61.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 150 - 274 4.2e-20 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1245
AccB1I GGYRCC 1 cut(s) 1245
AccB7I CCANNNNNTGG 1 cut(s) 920
AccBSI CCGCTC 2 cut(s) 283, 631
AccII CGCG 2 cut(s) 109, 152
AciI CCGC 8 cut(s) 87, 281, 464, 631, 896, 932, 936, 1010
AclWI GGATC 3 cut(s) 79, 156, 575
AcoI YGGCCR 2 cut(s) 605, 742
AcuI CTGAAG 3 cut(s) 216, 546, 561
AfaI GTAC 5 cut(s) 42, 429, 558, 653, 1247
AfiI CCNNNNNNNGG 2 cut(s) 920, 984
AflIII ACRYGT 2 cut(s) 107, 150
AgsI TTSAA 8 cut(s) 123, 131, 362, 383, 472, 527, 784, 1261
AjnI CCWGG 2 cut(s) 97, 430
Alw26I GTCTC 3 cut(s) 321, 912, 1007
AlwI GGATC 3 cut(s) 79, 156, 575
AlwNI CAGNNNCTG 2 cut(s) 313, 425
Ama87I CYCGRG 3 cut(s) 16, 626, 644
AoxI GGCC 3 cut(s) 94, 605, 742
ApeKI GCWGC 7 cut(s) 289, 353, 367, 376, 755, 960, 1018
ArsI GACNNNNNNTTYG 3 cut(s) 36, 117, 149
Asp718I GGTACC 1 cut(s) 1245
AspS9I GGNCC 2 cut(s) 95, 793
AsuC2I CCSGG 1 cut(s) 834
AsuHPI GGTGA 3 cut(s) 340, 713, 902
AvaI CYCGRG 3 cut(s) 16, 626, 644
AvaII GGWCC 1 cut(s) 793
BaeGI GKGCMC 1 cut(s) 1124
BalI TGGCCA 1 cut(s) 744
BanI GGYRCC 1 cut(s) 1245
BbsI GAAGAC 1 cut(s) 821
BbvI GCAGC 7 cut(s) 276, 365, 379, 388, 742, 972, 1005
BccI CCATC 6 cut(s) 44, 52, 342, 580, 678, 982
BceAI ACGGC 1 cut(s) 897
BciT130I CCWGG 2 cut(s) 99, 432
BcnI CCSGG 1 cut(s) 834
BcoDI GTCTC 3 cut(s) 321, 912, 1007
BfaI CTAG 1 cut(s) 159
BfmI CTRYAG 3 cut(s) 351, 451, 1019
BisI GCNGC 9 cut(s) 290, 354, 368, 377, 632, 756, 897, 961, 1019
BlsI GCNGC 9 cut(s) 291, 355, 369, 378, 633, 757, 898, 962, 1020
Bme1390I CCNGG 3 cut(s) 99, 432, 834
Bme18I GGWCC 1 cut(s) 793
BmeT110I CYCGRG 3 cut(s) 16, 626, 644
BmgT120I GGNCC 2 cut(s) 95, 793
BmiI GGNNCC 2 cut(s) 436, 1247
BmrFI CCNGG 3 cut(s) 99, 432, 834
BmsI GCATC 3 cut(s) 235, 997, 1228
BpiI GAAGAC 1 cut(s) 821
BplI GAGNNNNNCTC 2 cut(s) 322, 354
BpmI CTGGAG 1 cut(s) 269
Bpu10I CCTNAGC 1 cut(s) 948
BpuEI CTTGAG 3 cut(s) 151, 392, 830
BpuMI CCSGG 1 cut(s) 834
BsaBI GATNNNNATC 1 cut(s) 1154
BsaJI CCNNGG 2 cut(s) 97, 873
BsaWI WCCGGW 1 cut(s) 1114
Bsc4I CCNNNNNNNGG 2 cut(s) 920, 984
Bse1I ACTGG 1 cut(s) 90
Bse8I GATNNNNATC 1 cut(s) 1154
BseBI CCWGG 2 cut(s) 99, 432
BseDI CCNNGG 2 cut(s) 97, 873
BseGI GGATG 5 cut(s) 10, 334, 850, 974, 1225
BseJI GATNNNNATC 1 cut(s) 1154
BseLI CCNNNNNNNGG 2 cut(s) 920, 984
BseMII CTCAG 4 cut(s) 332, 413, 748, 1089
BseNI ACTGG 1 cut(s) 90
BseSI GKGCMC 1 cut(s) 1124
BseXI GCAGC 7 cut(s) 276, 365, 379, 388, 742, 972, 1005
Bsh1236I CGCG 2 cut(s) 109, 152
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 3 cut(s) 96, 607, 744
BshNI GGYRCC 1 cut(s) 1245
BsiEI CGRYCG 1 cut(s) 276
BsiHKCI CYCGRG 3 cut(s) 16, 626, 644
BsiSI CCGG 2 cut(s) 833, 1115
BslFI GGGAC 3 cut(s) 407, 417, 892
BslI CCNNNNNNNGG 2 cut(s) 920, 984
BsmAI GTCTC 3 cut(s) 321, 912, 1007
BsmBI CGTCTC 2 cut(s) 912, 1007
BsmFI GGGAC 3 cut(s) 407, 417, 892
BsnI GGCC 3 cut(s) 96, 607, 744
BsoBI CYCGRG 3 cut(s) 16, 626, 644
Bsp1286I GDGCHC 1 cut(s) 1124
BspACI CCGC 8 cut(s) 87, 281, 464, 631, 896, 932, 936, 1010
BspANI GGCC 3 cut(s) 96, 607, 744
BspCNI CTCAG 4 cut(s) 331, 412, 747, 1090
BspFNI CGCG 2 cut(s) 109, 152
BspLI GGNNCC 2 cut(s) 436, 1247
BspMAI CTGCAG 2 cut(s) 355, 1023
BspPI GGATC 3 cut(s) 79, 156, 575
BspT107I GGYRCC 1 cut(s) 1245
BsrBI CCGCTC 2 cut(s) 283, 631
BsrI ACTGG 1 cut(s) 90
BssECI CCNNGG 2 cut(s) 97, 873
Bst2UI CCWGG 2 cut(s) 99, 432
Bst4CI ACNGT 2 cut(s) 65, 1126
Bst6I CTCTTC 3 cut(s) 495, 779, 1169
BstC8I GCNNGC 5 cut(s) 300, 351, 731, 870, 934
BstDEI CTNAG 5 cut(s) 318, 399, 734, 948, 1098
BstF5I GGATG 5 cut(s) 10, 334, 850, 974, 1225
BstFNI CGCG 2 cut(s) 109, 152
BstMAI GTCTC 3 cut(s) 321, 912, 1007
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 7 cut(s) 233, 289, 295, 373, 376, 640, 960
BstNI CCWGG 2 cut(s) 99, 432
BstSCI CCNGG 3 cut(s) 97, 430, 832
BstSFI CTRYAG 3 cut(s) 351, 451, 1019
BstSLI GKGCMC 1 cut(s) 1124
BstUI CGCG 2 cut(s) 109, 152
BstV1I GCAGC 7 cut(s) 276, 365, 379, 388, 742, 972, 1005
BstV2I GAAGAC 1 cut(s) 821
BstX2I RGATCY 3 cut(s) 71, 161, 580
BstYI RGATCY 3 cut(s) 71, 161, 580
BsuRI GGCC 3 cut(s) 96, 607, 744
BtsCI GGATG 5 cut(s) 10, 334, 850, 974, 1225
BtsIMutI CAGTG 1 cut(s) 97
Cac8I GCNNGC 5 cut(s) 300, 351, 731, 870, 934
CaiI CAGNNNCTG 2 cut(s) 313, 425
Cfr13I GGNCC 2 cut(s) 95, 793
CseI GACGC 4 cut(s) 141, 225, 411, 1024
Csp6I GTAC 5 cut(s) 41, 428, 557, 652, 1246
CviAII CATG 2 cut(s) 535, 1232
CviQI GTAC 5 cut(s) 41, 428, 557, 652, 1246
DdeI CTNAG 5 cut(s) 318, 399, 734, 948, 1098
EaeI YGGCCR 2 cut(s) 605, 742
Eam1104I CTCTTC 3 cut(s) 495, 779, 1169
EarI CTCTTC 3 cut(s) 495, 779, 1169
EciI GGCGGA 1 cut(s) 951
Eco47I GGWCC 1 cut(s) 793
Eco57I CTGAAG 3 cut(s) 216, 546, 561
Eco88I CYCGRG 3 cut(s) 16, 626, 644
EcoRII CCWGG 2 cut(s) 97, 430
EcoT22I ATGCAT 1 cut(s) 517
Esp3I CGTCTC 2 cut(s) 912, 1007
FaeI CATG 2 cut(s) 538, 1235
FaiI YATR 9 cut(s) 77, 513, 536, 771, 889, 991, 993, 1037, 1233
FalI AAGNNNNNCTT 4 cut(s) 559, 591, 1145, 1177
FaqI GGGAC 3 cut(s) 407, 417, 892
FatI CATG 2 cut(s) 534, 1231
FauI CCCGC 1 cut(s) 925
FauNDI CATATG 1 cut(s) 991
Fnu4HI GCNGC 9 cut(s) 290, 354, 368, 377, 632, 756, 897, 961, 1019
FokI GGATG 5 cut(s) 17, 321, 857, 961, 1232
Fsp4HI GCNGC 9 cut(s) 290, 354, 368, 377, 632, 756, 897, 961, 1019
FspBI CTAG 1 cut(s) 159
GluI GCNGC 9 cut(s) 290, 354, 368, 377, 632, 756, 897, 961, 1019
GsuI CTGGAG 1 cut(s) 269
HaeIII GGCC 3 cut(s) 96, 607, 744
HapII CCGG 2 cut(s) 833, 1115
HgaI GACGC 4 cut(s) 141, 225, 411, 1024
Hin1II CATG 2 cut(s) 538, 1235
HinfI GANTC 8 cut(s) 102, 395, 416, 661, 682, 826, 1059, 1130
HpaII CCGG 2 cut(s) 833, 1115
HphI GGTGA 3 cut(s) 340, 713, 902
Hpy166II GTNNAC 2 cut(s) 751, 793
Hpy188I TCNGA 7 cut(s) 58, 207, 321, 580, 708, 737, 844
Hpy188III TCNNGA 9 cut(s) 48, 69, 123, 168, 392, 781, 978, 1044, 1066
Hpy8I GTNNAC 2 cut(s) 751, 793
HpyAV CCTTC 3 cut(s) 466, 570, 1132
HpyCH4III ACNGT 2 cut(s) 65, 1126
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 6 cut(s) 292, 353, 515, 719, 926, 1021
HpyF10VI GCNNNNNNNGC 7 cut(s) 233, 289, 295, 373, 376, 640, 960
HpyF3I CTNAG 5 cut(s) 318, 399, 734, 948, 1098
HpySE526I ACGT 1 cut(s) 546
Hsp92II CATG 2 cut(s) 538, 1235
KpnI GGTACC 1 cut(s) 1249
LmnI GCTCC 2 cut(s) 283, 288
Lsp1109I GCAGC 7 cut(s) 276, 365, 379, 388, 742, 972, 1005
LweI GCATC 3 cut(s) 235, 997, 1228
MaeI CTAG 1 cut(s) 159
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 1 cut(s) 1195
MbiI CCGCTC 2 cut(s) 283, 631
MflI RGATCY 3 cut(s) 71, 161, 580
MhlI GDGCHC 1 cut(s) 1124
MlsI TGGCCA 1 cut(s) 744
MluCI AATT 1 cut(s) 459
MluI ACGCGT 2 cut(s) 107, 150
MluNI TGGCCA 1 cut(s) 744
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 3 cut(s) 81, 822, 1036
Mox20I TGGCCA 1 cut(s) 744
Mph1103I ATGCAT 1 cut(s) 517
MscI TGGCCA 1 cut(s) 744
MseI TTAA 4 cut(s) 140, 185, 969, 983
MslI CAYNNNNRTG 1 cut(s) 1236
Msp20I TGGCCA 1 cut(s) 744
MspA1I CMGCKG 2 cut(s) 289, 356
MspI CCGG 2 cut(s) 833, 1115
MspR9I CCNGG 3 cut(s) 99, 432, 834
MvaI CCWGG 2 cut(s) 99, 432
MvnI CGCG 2 cut(s) 109, 152
MwoI GCNNNNNNNGC 7 cut(s) 233, 289, 295, 373, 376, 640, 960
NciI CCSGG 1 cut(s) 834
NdeI CATATG 1 cut(s) 991
NlaIII CATG 2 cut(s) 538, 1235
NlaIV GGNNCC 2 cut(s) 436, 1247
NmeAIII GCCGAG 1 cut(s) 898
NsiI ATGCAT 1 cut(s) 517
PaeR7I CTCGAG 2 cut(s) 16, 626
PfeI GAWTC 7 cut(s) 102, 416, 661, 682, 826, 1059, 1130
PflMI CCANNNNNTGG 1 cut(s) 920
PkrI GCNGC 9 cut(s) 291, 355, 369, 378, 633, 757, 898, 962, 1020
Ple19I CGATCG 1 cut(s) 276
PleI GAGTC 1 cut(s) 389
PpsI GAGTC 1 cut(s) 389
Psp6I CCWGG 2 cut(s) 97, 430
PspGI CCWGG 2 cut(s) 97, 430
PspN4I GGNNCC 2 cut(s) 436, 1247
PspPI GGNCC 2 cut(s) 95, 793
PspXI VCTCGAGB 2 cut(s) 16, 626
PstI CTGCAG 2 cut(s) 355, 1023
PstNI CAGNNNCTG 2 cut(s) 313, 425
PsuI RGATCY 3 cut(s) 71, 161, 580
PvuI CGATCG 1 cut(s) 276
PvuII CAGCTG 2 cut(s) 289, 356
RsaI GTAC 5 cut(s) 42, 429, 558, 653, 1247
RsaNI GTAC 5 cut(s) 41, 428, 557, 652, 1246
RseI CAYNNNNRTG 1 cut(s) 1236
SaqAI TTAA 4 cut(s) 140, 185, 969, 983
SatI GCNGC 9 cut(s) 290, 354, 368, 377, 632, 756, 897, 961, 1019
Sau96I GGNCC 2 cut(s) 95, 793
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 3 cut(s) 99, 432, 834
SduI GDGCHC 1 cut(s) 1124
SfaNI GCATC 3 cut(s) 235, 997, 1228
SfcI CTRYAG 3 cut(s) 351, 451, 1019
Sfr274I CTCGAG 2 cut(s) 16, 626
SinI GGWCC 1 cut(s) 793
SlaI CTCGAG 2 cut(s) 16, 626
SmiMI CAYNNNNRTG 1 cut(s) 1236
SmlI CTYRAG 5 cut(s) 16, 166, 371, 626, 809
SmoI CTYRAG 5 cut(s) 16, 166, 371, 626, 809
Sse9I AATT 1 cut(s) 459
SsiI CCGC 8 cut(s) 87, 281, 464, 631, 896, 932, 936, 1010
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 3 cut(s) 97, 430, 832
TaaI ACNGT 2 cut(s) 65, 1126
TaiI ACGT 1 cut(s) 549
TaqI TCGA 7 cut(s) 17, 28, 47, 627, 1065, 1128, 1136
TasI AATT 1 cut(s) 459
TauI GCSGC 2 cut(s) 634, 899
TfiI GAWTC 7 cut(s) 102, 416, 661, 682, 826, 1059, 1130
Tru1I TTAA 4 cut(s) 140, 185, 969, 983
Tru9I TTAA 4 cut(s) 140, 185, 969, 983
TscAI CASTG 1 cut(s) 97
TseI GCWGC 7 cut(s) 289, 353, 367, 376, 755, 960, 1018
TspDTI ATGAA 6 cut(s) 240, 523, 836, 861, 1122, 1187
TspGWI ACGGA 1 cut(s) 573
TspRI CASTG 1 cut(s) 97
Van91I CCANNNNNTGG 1 cut(s) 920
VpaK11BI GGWCC 1 cut(s) 793
XhoI CTCGAG 2 cut(s) 16, 626
XspI CTAG 1 cut(s) 159
Zsp2I ATGCAT 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.