Rh7BG009800

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004076
Physical Location & Seq
Reverse (-)
633719 .. 636277
2559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG009800.1

Sequence Viewer

Length: 1278 bp
ATGGAAGCAGCGAGTGTGTTCCAATCATCAATTGCGGCCTTTAGGCCTTGGAATTCTGTCGGAAGATCCCGTCTTTTGATGGCCAGCGGTCCCAAGTTTATGCCTTTGGGACATTTGGGTTCCAAATCTCACTCCTCAATCAAGCAGCATCAGTTTTCAAATTCAGCTGGAACTGGAAGAATGGGTTTTGGAAGGAGGAGGTGCTTGGTAGTTAGGGCGGCATCAGCGTCTCCGGACTCTGCTGGTTCTAGTGCTCCAATTGCTCCACTTCAGCTGGAGTCGCCGATTGGACAGTTCCTATCTCAGATGATGATAAGCCACCCTCATCTTGTGCCTACCGCAGTTGAGCAGCAGCTCGAACAGCTCCAAACTGACCGCGATGCTGAGCAGAAGAAGGAAGAGGCTTCCGCTTCAGACACTGATCTTGTGTTATACAGGAGAATTGCGGAGGTTAAAGCTAATGAAAGGAAGAAAGCTCTTGAAGAGATATTATATGCGTTAGTGGTGCAGAAATTCATGGATGCCAATGTTTCTTTGGTGCCTTCCATTGCCCCTGCTGCTTCAGACCCTTCTGGCCGAGTTGATGCATGGCCGAGTCAGGATGACAAGCTCGAGCGACTGCATTCACCTGAAGCCTACGAGATGATCCAGAACCACCTGTCTCTCATCCTAGGAAATCGGTTGGACGACTCGACCTCTTTAGCACAGATAAGCAAGCTCAGAGTGGGGCAGGTTTATGCAGCATCTGTAATGTATGGATACTTCCTCAAGCGGGTTGATCAGAGGTTTCAGCTTGAGAAGACAATGAAGATCCTTCCAGGTTCGCTGGGTGGAGGTGGAGAAGACAGTGATATTCAAAAAGCTGTGGGAGAGGACAAGAGGCCTGGTGGTGTGGATGATTCTTTGCAAGCAGCAGCTTCCCATCCTGAAGTATCTTCTTGGTCTGGGGGCATGGGTCCTGGAGCTTTTGGTAATGTGATCAAACCTTCCCGCTTGAGAACCTATGTGATGTCTGTCGATGGAGAGACCCTTCAAAGATACGCAACAATCAGATCGAGAGAGGCTGTTAGCATCATTGAAAAGCACACTGAGGCGTTGTTTGGAAAACCTGATATTGTTATAACACCTCAGGGAACTGTTGATTCTTCCAATGATGAACACATCAAAATTAGCTTTGGTGGTTTGAAGAGACTTGTTTTGGAAGCTGTGACTTTCGGTTCTTTCCTCTGGGATGTTGAGAGCTATGTGGATTCCAGGTACCATTTTGTTACGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0006950 GO:0006979 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0010035 GO:0010193 GO:0010224 GO:0042221 GO:0042493 GO:0046677 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

425

Amino Acids

46.4

Weight (kDa)

6.61

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 144 - 269 5.2e-21 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1121
Acc36I ACCTGC 1 cut(s) 721
Acc65I GGTACC 1 cut(s) 1257
AccB1I GGYRCC 2 cut(s) 538, 1257
AccII CGCG 1 cut(s) 378
AccIII TCCGGA 1 cut(s) 232
AciI CCGC 9 cut(s) 35, 87, 218, 339, 376, 408, 446, 772, 991
AclWI GGATC 3 cut(s) 60, 640, 805
AcoI YGGCCR 3 cut(s) 81, 574, 590
AcsI RAATTY 3 cut(s) 52, 160, 512
AcuI CTGAAG 5 cut(s) 254, 396, 546, 651, 948
AfaI GTAC 1 cut(s) 1259
AfiI CCNNNNNNNGG 1 cut(s) 772
AgsI TTSAA 6 cut(s) 159, 482, 857, 1034, 1079, 1186
AjnI CCWGG 4 cut(s) 817, 883, 958, 1253
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 4 cut(s) 234, 666, 1019, 1183
AlwI GGATC 3 cut(s) 60, 640, 805
AlwNI CAGNNNCTG 2 cut(s) 419, 746
Ama87I CYCGRG 1 cut(s) 611
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 6 cut(s) 36, 44, 81, 574, 590, 881
ApeKI GCWGC 8 cut(s) 8, 145, 349, 352, 557, 740, 911, 914
ApoI RAATTY 3 cut(s) 52, 160, 512
Asp718I GGTACC 1 cut(s) 1257
AspA2I CCTAGG 1 cut(s) 670
AspS9I GGNCC 2 cut(s) 89, 956
AsuHPI GGTGA 1 cut(s) 618
AvaI CYCGRG 1 cut(s) 611
AvaII GGWCC 2 cut(s) 89, 956
AvrII CCTAGG 1 cut(s) 670
AxyI CCTNAGG 1 cut(s) 1128
BalI TGGCCA 1 cut(s) 83
BanI GGYRCC 2 cut(s) 538, 1257
BarI GAAGNNNNNNTAC 2 cut(s) 746, 778
BbsI GAAGAC 2 cut(s) 806, 849
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 8 cut(s) 20, 157, 361, 364, 544, 752, 923, 926
BccI CCATC 3 cut(s) 73, 930, 1013
BciT130I CCWGG 4 cut(s) 819, 885, 960, 1255
BciVI GTATCC 1 cut(s) 752
BclI TGATCA 2 cut(s) 778, 978
BcoDI GTCTC 4 cut(s) 234, 666, 1019, 1183
BfaI CTAG 2 cut(s) 249, 671
BfuAI ACCTGC 1 cut(s) 721
BfuI GTATCC 1 cut(s) 752
BlnI CCTAGG 1 cut(s) 670
BlpI GCTNAGC 1 cut(s) 384
Bme1390I CCNGG 4 cut(s) 819, 885, 960, 1255
Bme18I GGWCC 2 cut(s) 89, 956
BmeT110I CYCGRG 1 cut(s) 611
BmgT120I GGNCC 2 cut(s) 89, 956
BmiI GGNNCC 5 cut(s) 91, 121, 540, 957, 1259
BmrFI CCNGG 4 cut(s) 819, 885, 960, 1255
BmsI GCATC 7 cut(s) 157, 230, 370, 511, 574, 752, 1080
BpiI GAAGAC 2 cut(s) 806, 849
BpmI CTGGAG 2 cut(s) 296, 981
Bpu1102I GCTNAGC 1 cut(s) 384
BpuEI CTTGAG 3 cut(s) 752, 815, 1015
BsaI GGTCTC 1 cut(s) 1019
BsaJI CCNNGG 2 cut(s) 47, 670
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 772
Bse1I ACTGG 1 cut(s) 178
Bse21I CCTNAGG 1 cut(s) 1128
Bse3DI GCAATG 1 cut(s) 546
BseAI TCCGGA 1 cut(s) 232
BseBI CCWGG 4 cut(s) 819, 885, 960, 1255
BseDI CCNNGG 2 cut(s) 47, 670
BseGI GGATG 6 cut(s) 526, 607, 666, 901, 922, 1237
BseLI CCNNNNNNNGG 1 cut(s) 772
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 5 cut(s) 317, 375, 733, 1080, 1142
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 2 cut(s) 124, 211
BseXI GCAGC 8 cut(s) 20, 157, 361, 364, 544, 752, 923, 926
BseYI CCCAGC 1 cut(s) 826
BsgI GTGCAG 1 cut(s) 527
Bsh1236I CGCG 1 cut(s) 378
BshFI GGCC 6 cut(s) 38, 46, 83, 576, 592, 883
BshNI GGYRCC 2 cut(s) 538, 1257
BsiHKAI GWGCWC 1 cut(s) 256
BsiHKCI CYCGRG 1 cut(s) 611
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 2 cut(s) 75, 123
BslI CCNNNNNNNGG 1 cut(s) 772
BsmAI GTCTC 4 cut(s) 234, 666, 1019, 1183
BsmBI CGTCTC 1 cut(s) 234
BsmFI GGGAC 2 cut(s) 75, 123
BsmI GAATGC 1 cut(s) 622
BsnI GGCC 6 cut(s) 38, 46, 83, 576, 592, 883
Bso31I GGTCTC 1 cut(s) 1019
BsoBI CYCGRG 1 cut(s) 611
Bsp1286I GDGCHC 1 cut(s) 256
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 7 cut(s) 65, 421, 645, 778, 810, 978, 1052
Bsp1720I GCTNAGC 1 cut(s) 384
BspACI CCGC 9 cut(s) 35, 87, 218, 339, 376, 408, 446, 772, 991
BspANI GGCC 6 cut(s) 38, 46, 83, 576, 592, 883
BspCNI CTCAG 5 cut(s) 316, 376, 732, 1081, 1141
BspEI TCCGGA 1 cut(s) 232
BspFNI CGCG 1 cut(s) 378
BspLI GGNNCC 5 cut(s) 91, 121, 540, 957, 1259
BspMI ACCTGC 1 cut(s) 721
BspPI GGATC 3 cut(s) 60, 640, 805
BspT107I GGYRCC 2 cut(s) 538, 1257
BspTNI GGTCTC 1 cut(s) 1019
BsrDI GCAATG 1 cut(s) 546
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 2 cut(s) 47, 670
BssMI GATC 7 cut(s) 65, 421, 645, 778, 810, 978, 1052
BssT1I CCWWGG 2 cut(s) 47, 670
Bst2UI CCWGG 4 cut(s) 819, 885, 960, 1255
Bst4CI ACNGT 3 cut(s) 294, 848, 1138
Bst6I CTCTTC 3 cut(s) 393, 477, 1181
BstC8I GCNNGC 3 cut(s) 85, 716, 909
BstDEI CTNAG 5 cut(s) 303, 384, 719, 1089, 1128
BstF5I GGATG 6 cut(s) 526, 607, 666, 901, 922, 1237
BstFNI CGCG 1 cut(s) 378
BstKTI GATC 7 cut(s) 68, 424, 648, 781, 813, 981, 1055
BstMAI GTCTC 4 cut(s) 234, 666, 1019, 1183
BstMBI GATC 7 cut(s) 65, 421, 645, 778, 810, 978, 1052
BstMWI GCNNNNNNNGC 5 cut(s) 224, 260, 280, 361, 557
BstNI CCWGG 4 cut(s) 819, 885, 960, 1255
BstSCI CCNGG 4 cut(s) 817, 883, 958, 1253
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 8 cut(s) 20, 157, 361, 364, 544, 752, 923, 926
BstV2I GAAGAC 2 cut(s) 806, 849
BstX2I RGATCY 2 cut(s) 65, 810
BstYI RGATCY 2 cut(s) 65, 810
Bsu36I CCTNAGG 1 cut(s) 1128
BsuI GTATCC 1 cut(s) 752
BsuRI GGCC 6 cut(s) 38, 46, 83, 576, 592, 883
BtgZI GCGATG 1 cut(s) 393
BtsCI GGATG 6 cut(s) 526, 607, 666, 901, 922, 1237
BtsIMutI CAGTG 3 cut(s) 417, 853, 1086
BveI ACCTGC 1 cut(s) 721
Cac8I GCNNGC 3 cut(s) 85, 716, 909
CaiI CAGNNNCTG 2 cut(s) 419, 746
Cfr13I GGNCC 2 cut(s) 89, 956
CseI GACGC 1 cut(s) 216
Csp6I GTAC 1 cut(s) 1258
CviAII CATG 3 cut(s) 517, 588, 952
CviQI GTAC 1 cut(s) 1258
DdeI CTNAG 5 cut(s) 303, 384, 719, 1089, 1128
DpnI GATC 7 cut(s) 67, 423, 647, 780, 812, 980, 1054
DpnII GATC 7 cut(s) 65, 421, 645, 778, 810, 978, 1052
EaeI YGGCCR 3 cut(s) 81, 574, 590
Eam1104I CTCTTC 3 cut(s) 393, 477, 1181
EarI CTCTTC 3 cut(s) 393, 477, 1181
Eco130I CCWWGG 2 cut(s) 47, 670
Eco147I AGGCCT 2 cut(s) 46, 883
Eco31I GGTCTC 1 cut(s) 1019
Eco47I GGWCC 2 cut(s) 89, 956
Eco57I CTGAAG 5 cut(s) 254, 396, 546, 651, 948
Eco81I CCTNAGG 1 cut(s) 1128
Eco88I CYCGRG 1 cut(s) 611
EcoO109I RGGNCCY 1 cut(s) 956
EcoRI GAATTC 1 cut(s) 52
EcoRII CCWGG 4 cut(s) 817, 883, 958, 1253
EcoT14I CCWWGG 2 cut(s) 47, 670
EcoT22I ATGCAT 1 cut(s) 589
ErhI CCWWGG 2 cut(s) 47, 670
Esp3I CGTCTC 1 cut(s) 234
FaeI CATG 3 cut(s) 520, 591, 955
FaqI GGGAC 2 cut(s) 75, 123
FatI CATG 3 cut(s) 516, 587, 951
FauI CCCGC 2 cut(s) 765, 998
FbaI TGATCA 2 cut(s) 778, 978
FokI GGATG 6 cut(s) 533, 614, 653, 908, 909, 1244
FspBI CTAG 2 cut(s) 249, 671
GsaI CCCAGC 1 cut(s) 830
GsuI CTGGAG 2 cut(s) 296, 981
HaeIII GGCC 6 cut(s) 38, 46, 83, 576, 592, 883
HapII CCGG 1 cut(s) 233
HgaI GACGC 1 cut(s) 216
Hin1II CATG 3 cut(s) 520, 591, 955
HinfI GANTC 7 cut(s) 236, 278, 595, 689, 899, 1142, 1250
HpaII CCGG 1 cut(s) 233
HphI GGTGA 1 cut(s) 618
Hpy188I TCNGA 7 cut(s) 62, 306, 415, 565, 722, 783, 1052
Hpy188III TCNNGA 6 cut(s) 233, 479, 599, 649, 926, 1056
HpyAV CCTTC 7 cut(s) 186, 388, 552, 579, 824, 996, 1040
HpyCH4III ACNGT 3 cut(s) 294, 848, 1138
HpyCH4V TGCA 5 cut(s) 508, 587, 622, 740, 907
HpyF10VI GCNNNNNNNGC 5 cut(s) 224, 260, 280, 361, 557
HpyF3I CTNAG 5 cut(s) 303, 384, 719, 1089, 1128
Hsp92II CATG 3 cut(s) 520, 591, 955
Kpn2I TCCGGA 1 cut(s) 232
KpnI GGTACC 1 cut(s) 1261
Ksp22I TGATCA 2 cut(s) 778, 978
Kzo9I GATC 7 cut(s) 65, 421, 645, 778, 810, 978, 1052
LmnI GCTCC 4 cut(s) 259, 268, 369, 962
Lsp1109I GCAGC 8 cut(s) 20, 157, 361, 364, 544, 752, 923, 926
LweI GCATC 7 cut(s) 157, 230, 370, 511, 574, 752, 1080
MaeI CTAG 2 cut(s) 249, 671
MaeIII GTNAC 2 cut(s) 1207, 1267
MalI GATC 7 cut(s) 67, 423, 647, 780, 812, 980, 1054
MboI GATC 7 cut(s) 65, 421, 645, 778, 810, 978, 1052
MfeI CAATTG 2 cut(s) 30, 258
MflI RGATCY 2 cut(s) 65, 810
MhlI GDGCHC 1 cut(s) 256
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 7 cut(s) 30, 52, 160, 258, 441, 512, 1167
MluNI TGGCCA 1 cut(s) 83
MlyI GAGTC 4 cut(s) 230, 287, 604, 683
MmeI TCCRAC 2 cut(s) 40, 663
Mox20I TGGCCA 1 cut(s) 83
Mph1103I ATGCAT 1 cut(s) 589
MroI TCCGGA 1 cut(s) 232
MscI TGGCCA 1 cut(s) 83
MseI TTAA 1 cut(s) 453
Msp20I TGGCCA 1 cut(s) 83
MspA1I CMGCKG 3 cut(s) 87, 167, 274
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 4 cut(s) 819, 885, 960, 1255
MunI CAATTG 2 cut(s) 30, 258
Mva1269I GAATGC 1 cut(s) 622
MvaI CCWGG 4 cut(s) 819, 885, 960, 1255
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 5 cut(s) 224, 260, 280, 361, 557
NdeII GATC 7 cut(s) 65, 421, 645, 778, 810, 978, 1052
NlaIII CATG 3 cut(s) 520, 591, 955
NlaIV GGNNCC 5 cut(s) 91, 121, 540, 957, 1259
NmeAIII GCCGAG 2 cut(s) 602, 618
NmuCI GTSAC 1 cut(s) 1207
NsiI ATGCAT 1 cut(s) 589
PaeR7I CTCGAG 1 cut(s) 611
PceI AGGCCT 2 cut(s) 46, 883
PctI GAATGC 1 cut(s) 622
PfeI GAWTC 3 cut(s) 899, 1142, 1250
PfoI TCCNGGA 1 cut(s) 958
PleI GAGTC 4 cut(s) 230, 286, 603, 683
PpsI GAGTC 4 cut(s) 230, 286, 603, 683
PpuMI RGGWCCY 1 cut(s) 956
PsiI TTATAA 1 cut(s) 1121
Psp5II RGGWCCY 1 cut(s) 956
Psp6I CCWGG 4 cut(s) 817, 883, 958, 1253
PspFI CCCAGC 1 cut(s) 826
PspGI CCWGG 4 cut(s) 817, 883, 958, 1253
PspN4I GGNNCC 5 cut(s) 91, 121, 540, 957, 1259
PspPI GGNCC 2 cut(s) 89, 956
PspPPI RGGWCCY 1 cut(s) 956
PspXI VCTCGAGB 1 cut(s) 611
PstNI CAGNNNCTG 2 cut(s) 419, 746
PsuI RGATCY 2 cut(s) 65, 810
PvuII CAGCTG 2 cut(s) 167, 274
RsaI GTAC 1 cut(s) 1259
RsaNI GTAC 1 cut(s) 1258
SaqAI TTAA 1 cut(s) 453
Sau3AI GATC 7 cut(s) 65, 421, 645, 778, 810, 978, 1052
Sau96I GGNCC 2 cut(s) 89, 956
SchI GAGTC 4 cut(s) 230, 287, 604, 683
ScrFI CCNGG 4 cut(s) 819, 885, 960, 1255
SduI GDGCHC 1 cut(s) 256
SfaNI GCATC 7 cut(s) 157, 230, 370, 511, 574, 752, 1080
Sfr274I CTCGAG 1 cut(s) 611
SinI GGWCC 2 cut(s) 89, 956
SlaI CTCGAG 1 cut(s) 611
SmlI CTYRAG 4 cut(s) 611, 767, 794, 994
SmoI CTYRAG 4 cut(s) 611, 767, 794, 994
Sse9I AATT 7 cut(s) 30, 52, 160, 258, 441, 512, 1167
SseBI AGGCCT 2 cut(s) 46, 883
SsiI CCGC 9 cut(s) 35, 87, 218, 339, 376, 408, 446, 772, 991
SspMI CTAG 2 cut(s) 249, 671
StuI AGGCCT 2 cut(s) 46, 883
StyD4I CCNGG 4 cut(s) 817, 883, 958, 1253
StyI CCWWGG 2 cut(s) 47, 670
TaaI ACNGT 3 cut(s) 294, 848, 1138
TaqI TCGA 5 cut(s) 357, 612, 692, 1017, 1055
TasI AATT 7 cut(s) 30, 52, 160, 258, 441, 512, 1167
TauI GCSGC 2 cut(s) 38, 221
TfiI GAWTC 3 cut(s) 899, 1142, 1250
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TscAI CASTG 3 cut(s) 424, 853, 1093
TseFI GTSAC 1 cut(s) 1207
TseI GCWGC 8 cut(s) 8, 145, 349, 352, 557, 740, 911, 914
Tsp45I GTSAC 1 cut(s) 1207
TspDTI ATGAA 4 cut(s) 477, 505, 821, 1170
TspRI CASTG 3 cut(s) 424, 853, 1093
VpaK11BI GGWCC 2 cut(s) 89, 956
XapI RAATTY 3 cut(s) 52, 160, 512
XcmI CCANNNNNNNNNTGG 1 cut(s) 532
XhoI CTCGAG 1 cut(s) 611
XmaJI CCTAGG 1 cut(s) 670
XspI CTAG 2 cut(s) 249, 671
Zsp2I ATGCAT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.