Rorug06G0410400

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
55254041 .. 55257277
3237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0410400.1

Sequence Viewer

Length: 1509 bp
ATGCATCTTCTTCTTGTTCTTTTCCCTCTGGCTATCTTCCTCTTCAAATTTGCCTACTCAACCCTATGGGTCCCATGGAGGACGCAAACCCACTTCAGAAAGCAAGGCATAAGGGGCCCCGGCTACCGTCCGATCTTCGGAAACTCCGCCGAGATCCGCCGTCTGTTCGCCGAAGCTCTCTCAAAGCGAGTCCCATTGGACCACGACATCGCTCCACGCGCGATTCCATTCTACCACAGGTGGTCCAGCATGTACGGGAAGACTTTCCTCTACTGGTTCGGGCCCAATCCCAGGCTGGCAATATCCGACCCGGATTTGATCAAAGAAGTCCTTGTCAATTCCAGTGGGTCGTTTCAAAAGATACCCTTTACCCCTTTAACCAAAAACCTCTTCGGAGAAGGACTCGTTGGGCTCGAAGGCGATGATTGGGCCTTTCATAGAAGGATCGTCAACCAGGCCTTCAAAATGGAGCGGGTCAAGGGTTGGGTGCCTGAAATTGTGGGGAGTGCCATGAAGGTGTTGGAGAAGTGGGAGGGTATAAGAGGAGAGAAAGATGAGTTTGAGATGGATGTGCACAAAGAATTTCATGATCTTTCTGCTGATGTTATATCGAGAACAGCTTTTGGAAGCAGTTTTGAGGAGGGAAAGCGAATTTTCAACTTGCAAGAACAACAAATGCATCTTTTCTCGAAGGCGGTTAGGAGCATCTACATTCCTGGATTCAGGTTTTTACCCACCAAGAATAACAGAGAAAGGTGGAGACTACAAAAGGAAACTAGTGAATCAATACGGATGTTGATCTTGAATAGTCCCAAAACAAGAGAAGATTCGACAAATCTACTCAGTCTGTTAATGTCTTCTTACAAGAACCAGAGTGGTGAAGAAGAAAAATTAGGGTTAGAGGATATAATAGCTGAATGCAAGACCTTCTACCTTGCAGGAAGTGAAACAACTGCTTCTCTTTTGACTTGGGCACTTCTCCTTCTAGCCCGCCATCAGGATTGGCAAAGCAAGGCTAGGGAAGAAGTGATTCGCACTAGTGGAGACAATAAGCTTCCTACTGCAGAGAATTTGAATGATCTTAAGATTGTGAGCCTGATAGTTAACGAAACACTTAGACTCTACCCTCCAGCTGTGATGCTAATGAGGCAAACATCAAAGAAGGTTAAGCTTGGGGACCTTGACATTCCTGCTCACACACAACTCTACTTGGCCTTGACCGCTGTCCATCACGACACTGAGATATGGGGAGAAGATGCTAATGAGTTCAATCCCTCGAGGTTTTCAGAGCCTCGAAAGCATTTAGCCTCATTCTTTCCATTTGGTCTGGGGCCTAGAATCTGCGCAGGTCAAAACTTGGCTCTGGTTGAAGCAAAACTGGTCTTGGCAACCATCATCCGCCACTATTCTTTTGTGGTGTCTCCAACCTATGTCCATGCACCAATGTTGTTTATTAGTTTACAGCCTCAATATGGTGCTCAAATCCTCTTTAGGAAGATTCCAAGCTGA
Functional Annotation

Protein Analysis

502

Amino Acids

57.63

Weight (kDa)

9.26

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 79 - 476 8.9e-85 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1276
Acc16I TGCGCA 1 cut(s) 1345
Acc36I ACCTGC 1 cut(s) 1337
AccB1I GGYRCC 1 cut(s) 487
AccBSI CCGCTC 1 cut(s) 472
AccII CGCG 2 cut(s) 219, 221
AciI CCGC 7 cut(s) 147, 157, 472, 695, 991, 1221, 1399
AclWI GGATC 2 cut(s) 148, 452
AcsI RAATTY 4 cut(s) 47, 581, 651, 1069
AcuI CTGAAG 1 cut(s) 79
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 4 cut(s) 137, 291, 997, 1472
AflII CTTAAG 1 cut(s) 1082
AgsI TTSAA 8 cut(s) 46, 356, 463, 658, 805, 1075, 1270, 1370
AhlI ACTAGT 2 cut(s) 776, 1037
AjnI CCWGG 3 cut(s) 290, 453, 715
AjuI GAANNNNNNNTTGG 4 cut(s) 374, 390, 406, 422
AluBI AGCT 7 cut(s) 176, 620, 914, 1054, 1133, 1171, 1506
AluI AGCT 7 cut(s) 176, 620, 914, 1054, 1133, 1171, 1506
Alw21I GWGCWC 2 cut(s) 576, 1480
Alw26I GTCTC 3 cut(s) 754, 1038, 1425
Alw44I GTGCAC 1 cut(s) 572
AlwI GGATC 2 cut(s) 148, 452
Ama87I CYCGRG 1 cut(s) 1276
AoxI GGCC 6 cut(s) 115, 281, 429, 456, 1212, 1331
ApaI GGGCCC 2 cut(s) 119, 285
ApaLI GTGCAC 1 cut(s) 572
ApoI RAATTY 4 cut(s) 47, 581, 651, 1069
Asp700I GAANNNNTTC 2 cut(s) 263, 1029
AspLEI GCGC 2 cut(s) 221, 1346
AsuC2I CCSGG 2 cut(s) 120, 311
AsuHPI GGTGA 1 cut(s) 890
AvaI CYCGRG 1 cut(s) 1276
AvaII GGWCC 4 cut(s) 70, 199, 243, 1177
BaeGI GKGCMC 4 cut(s) 119, 285, 576, 976
BanI GGYRCC 1 cut(s) 487
BanII GRGCYC 3 cut(s) 119, 285, 414
BbsI GAAGAC 2 cut(s) 266, 849
Bbv12I GWGCWC 2 cut(s) 576, 1480
BccI CCATC 4 cut(s) 559, 1002, 1236, 1400
BceAI ACGGC 1 cut(s) 144
BciT130I CCWGG 3 cut(s) 292, 455, 717
BclI TGATCA 1 cut(s) 318
BcnI CCSGG 2 cut(s) 120, 311
BcoDI GTCTC 3 cut(s) 754, 1038, 1425
BcuI ACTAGT 2 cut(s) 776, 1037
BfaI CTAG 5 cut(s) 777, 986, 1017, 1038, 1335
BfmI CTRYAG 1 cut(s) 1062
BfrI CTTAAG 1 cut(s) 1082
BfuAI ACCTGC 1 cut(s) 1337
Bme1390I CCNGG 5 cut(s) 120, 292, 311, 455, 717
Bme18I GGWCC 4 cut(s) 70, 199, 243, 1177
BmeT110I CYCGRG 1 cut(s) 1276
BmiI GGNNCC 9 cut(s) 71, 72, 116, 117, 118, 283, 489, 1178, 1332
BmrFI CCNGG 5 cut(s) 120, 292, 311, 455, 717
BmsI GCATC 5 cut(s) 13, 688, 714, 1128, 1246
BoxI GACNNNNGTC 1 cut(s) 1223
BpiI GAAGAC 2 cut(s) 266, 849
BplI GAGNNNNNCTC 2 cut(s) 387, 419
BpmI CTGGAG 1 cut(s) 1113
BpuMI CCSGG 2 cut(s) 120, 311
BsaBI GATNNNNATC 1 cut(s) 797
BsaJI CCNNGG 3 cut(s) 74, 118, 290
Bsc4I CCNNNNNNNGG 4 cut(s) 137, 291, 997, 1472
Bse1I ACTGG 3 cut(s) 278, 342, 1383
Bse8I GATNNNNATC 1 cut(s) 797
BseBI CCWGG 3 cut(s) 292, 455, 717
BseDI CCNNGG 3 cut(s) 74, 118, 290
BseGI GGATG 3 cut(s) 574, 798, 1395
BseJI GATNNNNATC 1 cut(s) 797
BseLI CCNNNNNNNGG 4 cut(s) 137, 291, 997, 1472
BseMII CTCAG 2 cut(s) 856, 1230
BseNI ACTGG 3 cut(s) 278, 342, 1383
BseRI GAGGAG 2 cut(s) 558, 653
BseSI GKGCMC 4 cut(s) 119, 285, 576, 976
Bsh1236I CGCG 2 cut(s) 219, 221
BshFI GGCC 6 cut(s) 117, 283, 431, 458, 1214, 1333
BshNI GGYRCC 1 cut(s) 487
BsiHKAI GWGCWC 2 cut(s) 576, 1480
BsiHKCI CYCGRG 1 cut(s) 1276
BsiSI CCGG 2 cut(s) 120, 311
BslFI GGGAC 4 cut(s) 56, 176, 795, 1190
BslI CCNNNNNNNGG 4 cut(s) 137, 291, 997, 1472
BsmAI GTCTC 3 cut(s) 754, 1038, 1425
BsmFI GGGAC 4 cut(s) 56, 176, 795, 1190
BsmI GAATGC 1 cut(s) 923
BsnI GGCC 6 cut(s) 117, 283, 431, 458, 1214, 1333
BsoBI CYCGRG 1 cut(s) 1276
Bsp120I GGGCCC 2 cut(s) 115, 281
Bsp1286I GDGCHC 6 cut(s) 119, 285, 414, 576, 976, 1480
Bsp143I GATC 7 cut(s) 132, 153, 318, 444, 589, 798, 1078
Bsp19I CCATGG 1 cut(s) 74
BspACI CCGC 7 cut(s) 147, 157, 472, 695, 991, 1221, 1399
BspANI GGCC 6 cut(s) 117, 283, 431, 458, 1214, 1333
BspCNI CTCAG 2 cut(s) 855, 1231
BspFNI CGCG 2 cut(s) 219, 221
BspHI TCATGA 1 cut(s) 586
BspLI GGNNCC 9 cut(s) 71, 72, 116, 117, 118, 283, 489, 1178, 1332
BspMAI CTGCAG 1 cut(s) 1066
BspMI ACCTGC 1 cut(s) 1337
BspPI GGATC 2 cut(s) 148, 452
BspT107I GGYRCC 1 cut(s) 487
BspTI CTTAAG 1 cut(s) 1082
BsrBI CCGCTC 1 cut(s) 472
BsrI ACTGG 3 cut(s) 278, 342, 1383
BssECI CCNNGG 3 cut(s) 74, 118, 290
BssMI GATC 7 cut(s) 132, 153, 318, 444, 589, 798, 1078
BssT1I CCWWGG 1 cut(s) 74
Bst2UI CCWGG 3 cut(s) 292, 455, 717
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 2 cut(s) 47, 395
BstAFI CTTAAG 1 cut(s) 1082
BstC8I GCNNGC 2 cut(s) 297, 991
BstDEI CTNAG 3 cut(s) 842, 1115, 1239
BstDSI CCRYGG 1 cut(s) 74
BstF5I GGATG 3 cut(s) 574, 798, 1395
BstFNI CGCG 2 cut(s) 219, 221
BstHHI GCGC 2 cut(s) 221, 1346
BstKTI GATC 7 cut(s) 135, 156, 321, 447, 592, 801, 1081
BstMAI GTCTC 3 cut(s) 754, 1038, 1425
BstMBI GATC 7 cut(s) 132, 153, 318, 444, 589, 798, 1078
BstMWI GCNNNNNNNGC 5 cut(s) 114, 218, 1147, 1220, 1297
BstNI CCWGG 3 cut(s) 292, 455, 717
BstNSI RCATGY 1 cut(s) 253
BstPAI GACNNNNGTC 1 cut(s) 1223
BstSCI CCNGG 5 cut(s) 118, 290, 309, 453, 715
BstSFI CTRYAG 1 cut(s) 1062
BstSLI GKGCMC 4 cut(s) 119, 285, 576, 976
BstUI CGCG 2 cut(s) 219, 221
BstV2I GAAGAC 2 cut(s) 266, 849
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BsuRI GGCC 6 cut(s) 117, 283, 431, 458, 1214, 1333
BtgI CCRYGG 1 cut(s) 74
BtgZI GCGATG 2 cut(s) 193, 435
BtsCI GGATG 3 cut(s) 574, 798, 1395
BtsIMutI CAGTG 2 cut(s) 349, 1236
BveI ACCTGC 1 cut(s) 1337
Cac8I GCNNGC 2 cut(s) 297, 991
CciI TCATGA 1 cut(s) 586
CfoI GCGC 2 cut(s) 221, 1346
CseI GACGC 1 cut(s) 91
Csp6I GTAC 1 cut(s) 253
CspCI CAANNNNNGTGG 2 cut(s) 325, 360
CviAII CATG 5 cut(s) 75, 250, 511, 587, 1436
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 3 cut(s) 842, 1115, 1239
DpnI GATC 7 cut(s) 134, 155, 320, 446, 591, 800, 1080
DpnII GATC 7 cut(s) 132, 153, 318, 444, 589, 798, 1078
Eam1104I CTCTTC 2 cut(s) 47, 395
EarI CTCTTC 2 cut(s) 47, 395
EciI GGCGGA 3 cut(s) 136, 146, 1388
Eco130I CCWWGG 1 cut(s) 74
Eco147I AGGCCT 1 cut(s) 458
Eco24I GRGCYC 3 cut(s) 119, 285, 414
Eco47I GGWCC 4 cut(s) 70, 199, 243, 1177
Eco57I CTGAAG 1 cut(s) 79
Eco88I CYCGRG 1 cut(s) 1276
EcoO109I RGGNCCY 5 cut(s) 70, 115, 116, 1177, 1331
EcoRII CCWGG 3 cut(s) 290, 453, 715
EcoT14I CCWWGG 1 cut(s) 74
EcoT22I ATGCAT 2 cut(s) 6, 681
EcoT38I GRGCYC 3 cut(s) 119, 285, 414
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 5 cut(s) 78, 253, 514, 590, 1439
FalI AAGNNNNNCTT 4 cut(s) 315, 347, 350, 382
FaqI GGGAC 4 cut(s) 56, 176, 795, 1190
FatI CATG 5 cut(s) 74, 249, 510, 586, 1435
FauI CCCGC 2 cut(s) 465, 998
FbaI TGATCA 1 cut(s) 318
FokI GGATG 3 cut(s) 581, 805, 1382
FriOI GRGCYC 3 cut(s) 119, 285, 414
FspBI CTAG 5 cut(s) 777, 986, 1017, 1038, 1335
FspI TGCGCA 1 cut(s) 1345
GlaI GCGC 2 cut(s) 220, 1345
GsuI CTGGAG 1 cut(s) 1113
HaeIII GGCC 6 cut(s) 117, 283, 431, 458, 1214, 1333
HapII CCGG 2 cut(s) 120, 311
HgaI GACGC 1 cut(s) 91
HhaI GCGC 2 cut(s) 221, 1346
Hin1II CATG 5 cut(s) 78, 253, 514, 590, 1439
Hin6I GCGC 2 cut(s) 219, 1344
HinP1I GCGC 2 cut(s) 219, 1344
HincII GTYRAC 2 cut(s) 451, 1105
HindII GTYRAC 2 cut(s) 451, 1105
HindIII AAGCTT 2 cut(s) 1052, 1169
HpaI GTTAAC 1 cut(s) 1105
HpaII CCGG 2 cut(s) 120, 311
HphI GGTGA 1 cut(s) 890
Hpy166II GTNNAC 4 cut(s) 451, 574, 1105, 1460
Hpy188I TCNGA 6 cut(s) 98, 132, 140, 307, 395, 1288
Hpy188III TCNNGA 6 cut(s) 587, 612, 688, 802, 998, 1232
Hpy8I GTNNAC 4 cut(s) 451, 574, 1105, 1460
HpyAV CCTTC 9 cut(s) 392, 410, 435, 469, 508, 685, 937, 992, 1156
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 8 cut(s) 4, 574, 664, 679, 921, 938, 1064, 1439
HpyF10VI GCNNNNNNNGC 5 cut(s) 114, 218, 1147, 1220, 1297
HpyF3I CTNAG 3 cut(s) 842, 1115, 1239
Hsp92II CATG 5 cut(s) 78, 253, 514, 590, 1439
HspAI GCGC 2 cut(s) 219, 1344
KflI GGGWCCC 1 cut(s) 70
Ksp22I TGATCA 1 cut(s) 318
KspAI GTTAAC 1 cut(s) 1105
Kzo9I GATC 7 cut(s) 132, 153, 318, 444, 589, 798, 1078
LmnI GCTCC 3 cut(s) 217, 469, 702
LweI GCATC 5 cut(s) 13, 688, 714, 1128, 1246
MaeI CTAG 5 cut(s) 777, 986, 1017, 1038, 1335
MalI GATC 7 cut(s) 134, 155, 320, 446, 591, 800, 1080
MbiI CCGCTC 1 cut(s) 472
MboI GATC 7 cut(s) 132, 153, 318, 444, 589, 798, 1078
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 6 cut(s) 119, 285, 414, 576, 976, 1480
MluCI AATT 7 cut(s) 47, 337, 495, 581, 651, 890, 1069
MlyI GAGTC 3 cut(s) 198, 396, 1113
MmeI TCCRAC 3 cut(s) 330, 501, 1448
Mph1103I ATGCAT 2 cut(s) 6, 681
MroXI GAANNNNTTC 2 cut(s) 263, 1029
MseI TTAA 5 cut(s) 377, 851, 1083, 1104, 1167
MslI CAYNNNNRTG 1 cut(s) 515
MspA1I CMGCKG 2 cut(s) 1133, 1223
MspCI CTTAAG 1 cut(s) 1082
MspI CCGG 2 cut(s) 120, 311
MspR9I CCNGG 5 cut(s) 120, 292, 311, 455, 717
Mva1269I GAATGC 1 cut(s) 923
MvaI CCWGG 3 cut(s) 292, 455, 717
MvnI CGCG 2 cut(s) 219, 221
MwoI GCNNNNNNNGC 5 cut(s) 114, 218, 1147, 1220, 1297
NciI CCSGG 2 cut(s) 120, 311
NcoI CCATGG 1 cut(s) 74
NdeII GATC 7 cut(s) 132, 153, 318, 444, 589, 798, 1078
NlaIII CATG 5 cut(s) 78, 253, 514, 590, 1439
NlaIV GGNNCC 9 cut(s) 71, 72, 116, 117, 118, 283, 489, 1178, 1332
NmeAIII GCCGAG 1 cut(s) 175
NsbI TGCGCA 1 cut(s) 1345
NsiI ATGCAT 2 cut(s) 6, 681
NspI RCATGY 1 cut(s) 253
PaeR7I CTCGAG 1 cut(s) 1276
PagI TCATGA 1 cut(s) 586
PceI AGGCCT 1 cut(s) 458
PcsI WCGNNNNNNNCGW 1 cut(s) 411
PctI GAATGC 1 cut(s) 923
PdmI GAANNNNTTC 2 cut(s) 263, 1029
PfeI GAWTC 7 cut(s) 223, 720, 782, 827, 1030, 1338, 1498
PfoI TCCNGGA 1 cut(s) 715
PleI GAGTC 3 cut(s) 197, 396, 1113
PpsI GAGTC 3 cut(s) 197, 396, 1113
PpuMI RGGWCCY 2 cut(s) 70, 1177
PshAI GACNNNNGTC 1 cut(s) 1223
Psp5II RGGWCCY 2 cut(s) 70, 1177
Psp6I CCWGG 3 cut(s) 290, 453, 715
PspGI CCWGG 3 cut(s) 290, 453, 715
PspN4I GGNNCC 9 cut(s) 71, 72, 116, 117, 118, 283, 489, 1178, 1332
PspOMI GGGCCC 2 cut(s) 115, 281
PspPPI RGGWCCY 2 cut(s) 70, 1177
PspXI VCTCGAGB 1 cut(s) 1276
PstI CTGCAG 1 cut(s) 1066
PsuI RGATCY 1 cut(s) 153
PvuII CAGCTG 1 cut(s) 1133
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 515
SaqAI TTAA 5 cut(s) 377, 851, 1083, 1104, 1167
Sau3AI GATC 7 cut(s) 132, 153, 318, 444, 589, 798, 1078
SchI GAGTC 3 cut(s) 198, 396, 1113
ScrFI CCNGG 5 cut(s) 120, 292, 311, 455, 717
SduI GDGCHC 6 cut(s) 119, 285, 414, 576, 976, 1480
SfaNI GCATC 5 cut(s) 13, 688, 714, 1128, 1246
SfcI CTRYAG 1 cut(s) 1062
Sfr274I CTCGAG 1 cut(s) 1276
SinI GGWCC 4 cut(s) 70, 199, 243, 1177
SlaI CTCGAG 1 cut(s) 1276
SmiMI CAYNNNNRTG 1 cut(s) 515
SmlI CTYRAG 2 cut(s) 1082, 1276
SmoI CTYRAG 2 cut(s) 1082, 1276
SpeI ACTAGT 2 cut(s) 776, 1037
Sse9I AATT 7 cut(s) 47, 337, 495, 581, 651, 890, 1069
SseBI AGGCCT 1 cut(s) 458
SsiI CCGC 7 cut(s) 147, 157, 472, 695, 991, 1221, 1399
SspMI CTAG 5 cut(s) 777, 986, 1017, 1038, 1335
StuI AGGCCT 1 cut(s) 458
StyD4I CCNGG 5 cut(s) 118, 290, 309, 453, 715
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 128
TaqI TCGA 6 cut(s) 414, 611, 689, 830, 1277, 1294
TasI AATT 7 cut(s) 47, 337, 495, 581, 651, 890, 1069
TfiI GAWTC 7 cut(s) 223, 720, 782, 827, 1030, 1338, 1498
Tru1I TTAA 5 cut(s) 377, 851, 1083, 1104, 1167
Tru9I TTAA 5 cut(s) 377, 851, 1083, 1104, 1167
TscAI CASTG 2 cut(s) 349, 1243
TspDTI ATGAA 3 cut(s) 425, 527, 575
TspGWI ACGGA 1 cut(s) 805
TspRI CASTG 2 cut(s) 349, 1243
Vha464I CTTAAG 1 cut(s) 1082
VneI GTGCAC 1 cut(s) 572
VpaK11BI GGWCC 4 cut(s) 70, 199, 243, 1177
XapI RAATTY 4 cut(s) 47, 581, 651, 1069
XceI RCATGY 1 cut(s) 253
XcmI CCANNNNNNNNNTGG 2 cut(s) 292, 517
XhoI CTCGAG 1 cut(s) 1276
XmnI GAANNNNTTC 2 cut(s) 263, 1029
XspI CTAG 5 cut(s) 777, 986, 1017, 1038, 1335
Zsp2I ATGCAT 2 cut(s) 6, 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.