Rmu_co8218716.1_g000001

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8218716.1
OG0004076
Physical Location & Seq
Reverse (-)
2 .. 737
736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8218716.1_g000001.1.cds

Sequence Viewer

Length: 624 bp
accgcagttgagcagcagctcgaacagctccaaactgaccgcgatgctgagcagaagaaggaagaggcttccgcttcggacactgatcttgtgttatacaggagaattgcggaggttaaagctaatgaaaggaagaaggctcttgaagagatattatatgcgttagtggtgcagaaattcatggatgccaatgtttctttggtgccttccattgcccctgctgcttcagacccttctggccgagttgatgcatggccgagtcaggatgacaagctcgagcgactacattctcctgaagcctacgagatgatccagaaccacctgtctctcatcctaggaaatcggttggacgactcgacctctttagcacagataagcaagctcagagtggggcaggtttatgcagcatctgtaatgtatggatacttcctcaagcgggttgatcagaggtttcagcttgagaagacaatgaagatccttccaggttcgctgggtggagaagacagtgatattcaaaaagccgtgggagaggacaagaggcctggtggtgtggatgattctttgcaagcagcagcttcccatcctgaagtatcttcttggtctgggggcatgggtcctggagct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0006950 GO:0006979 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0010035 GO:0010193 GO:0010224 GO:0042221 GO:0042493 GO:0046677 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

208

Amino Acids

22.79

Weight (kDa)

4.91

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 385
AccB1I GGYRCC 1 cut(s) 202
AccII CGCG 1 cut(s) 42
AciI CCGC 5 cut(s) 3, 40, 72, 110, 436
AclWI GGATC 2 cut(s) 304, 469
AcoI YGGCCR 2 cut(s) 238, 254
AcsI RAATTY 1 cut(s) 176
AcuI CTGAAG 3 cut(s) 210, 315, 606
AfiI CCNNNNNNNGG 1 cut(s) 436
AgsI TTSAA 2 cut(s) 146, 515
AjnI CCWGG 3 cut(s) 481, 541, 616
AluBI AGCT 8 cut(s) 19, 28, 122, 274, 382, 457, 575, 623
AluI AGCT 8 cut(s) 19, 28, 122, 274, 382, 457, 575, 623
Alw26I GTCTC 1 cut(s) 330
AlwI GGATC 2 cut(s) 304, 469
AlwNI CAGNNNCTG 1 cut(s) 410
Ama87I CYCGRG 1 cut(s) 275
AoxI GGCC 3 cut(s) 238, 254, 539
ApeKI GCWGC 6 cut(s) 13, 16, 221, 404, 569, 572
ApoI RAATTY 1 cut(s) 176
AspA2I CCTAGG 1 cut(s) 334
AspS9I GGNCC 1 cut(s) 614
AvaI CYCGRG 1 cut(s) 275
AvaII GGWCC 1 cut(s) 614
AvrII CCTAGG 1 cut(s) 334
BanI GGYRCC 1 cut(s) 202
BarI GAAGNNNNNNTAC 2 cut(s) 410, 442
BbsI GAAGAC 2 cut(s) 470, 507
BbvI GCAGC 6 cut(s) 25, 28, 208, 416, 581, 584
BccI CCATC 1 cut(s) 588
BceAI ACGGC 1 cut(s) 506
BciT130I CCWGG 3 cut(s) 483, 543, 618
BciVI GTATCC 1 cut(s) 416
BclI TGATCA 1 cut(s) 442
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 1 cut(s) 335
BfuAI ACCTGC 1 cut(s) 385
BfuI GTATCC 1 cut(s) 416
BisI GCNGC 6 cut(s) 14, 17, 222, 405, 570, 573
BlnI CCTAGG 1 cut(s) 334
BlpI GCTNAGC 1 cut(s) 48
BlsI GCNGC 6 cut(s) 15, 18, 223, 406, 571, 574
Bme1390I CCNGG 3 cut(s) 483, 543, 618
Bme18I GGWCC 1 cut(s) 614
BmeT110I CYCGRG 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 614
BmiI GGNNCC 2 cut(s) 204, 615
BmrFI CCNGG 3 cut(s) 483, 543, 618
BmsI GCATC 4 cut(s) 34, 175, 238, 416
BpiI GAAGAC 2 cut(s) 470, 507
Bpu1102I GCTNAGC 1 cut(s) 48
BpuEI CTTGAG 2 cut(s) 416, 479
BsaJI CCNNGG 2 cut(s) 334, 522
Bsc4I CCNNNNNNNGG 1 cut(s) 436
Bse3DI GCAATG 1 cut(s) 210
BseBI CCWGG 3 cut(s) 483, 543, 618
BseDI CCNNGG 2 cut(s) 334, 522
BseGI GGATG 5 cut(s) 190, 271, 330, 559, 580
BseLI CCNNNNNNNGG 1 cut(s) 436
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 2 cut(s) 39, 397
BseXI GCAGC 6 cut(s) 25, 28, 208, 416, 581, 584
BseYI CCCAGC 1 cut(s) 490
BsgI GTGCAG 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 42
BshFI GGCC 3 cut(s) 240, 256, 541
BshNI GGYRCC 1 cut(s) 202
BsiHKCI CYCGRG 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 436
BsmAI GTCTC 1 cut(s) 330
BsnI GGCC 3 cut(s) 240, 256, 541
BsoBI CYCGRG 1 cut(s) 275
Bsp143I GATC 4 cut(s) 85, 309, 442, 474
Bsp1720I GCTNAGC 1 cut(s) 48
BspACI CCGC 5 cut(s) 3, 40, 72, 110, 436
BspANI GGCC 3 cut(s) 240, 256, 541
BspCNI CTCAG 2 cut(s) 40, 396
BspFNI CGCG 1 cut(s) 42
BspLI GGNNCC 2 cut(s) 204, 615
BspMI ACCTGC 1 cut(s) 385
BspPI GGATC 2 cut(s) 304, 469
BspT107I GGYRCC 1 cut(s) 202
BsrDI GCAATG 1 cut(s) 210
BssECI CCNNGG 2 cut(s) 334, 522
BssMI GATC 4 cut(s) 85, 309, 442, 474
BssT1I CCWWGG 1 cut(s) 334
Bst2UI CCWGG 3 cut(s) 483, 543, 618
Bst4CI ACNGT 1 cut(s) 506
Bst6I CTCTTC 2 cut(s) 57, 141
BstC8I GCNNGC 2 cut(s) 380, 567
BstDEI CTNAG 2 cut(s) 48, 383
BstDSI CCRYGG 1 cut(s) 522
BstF5I GGATG 5 cut(s) 190, 271, 330, 559, 580
BstFNI CGCG 1 cut(s) 42
BstKTI GATC 4 cut(s) 88, 312, 445, 477
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 4 cut(s) 85, 309, 442, 474
BstMWI GCNNNNNNNGC 2 cut(s) 25, 221
BstNI CCWGG 3 cut(s) 483, 543, 618
BstSCI CCNGG 3 cut(s) 481, 541, 616
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 6 cut(s) 25, 28, 208, 416, 581, 584
BstV2I GAAGAC 2 cut(s) 470, 507
BstX2I RGATCY 1 cut(s) 474
BstYI RGATCY 1 cut(s) 474
BsuI GTATCC 1 cut(s) 416
BsuRI GGCC 3 cut(s) 240, 256, 541
BtgI CCRYGG 1 cut(s) 522
BtgZI GCGATG 1 cut(s) 57
BtsCI GGATG 5 cut(s) 190, 271, 330, 559, 580
BtsIMutI CAGTG 2 cut(s) 81, 511
BveI ACCTGC 1 cut(s) 385
Cac8I GCNNGC 2 cut(s) 380, 567
CaiI CAGNNNCTG 1 cut(s) 410
Cfr13I GGNCC 1 cut(s) 614
CviAII CATG 3 cut(s) 181, 252, 610
DdeI CTNAG 2 cut(s) 48, 383
DpnI GATC 4 cut(s) 87, 311, 444, 476
DpnII GATC 4 cut(s) 85, 309, 442, 474
EaeI YGGCCR 2 cut(s) 238, 254
Eam1104I CTCTTC 2 cut(s) 57, 141
EarI CTCTTC 2 cut(s) 57, 141
Eco130I CCWWGG 1 cut(s) 334
Eco147I AGGCCT 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 614
Eco57I CTGAAG 3 cut(s) 210, 315, 606
Eco88I CYCGRG 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 614
EcoRII CCWGG 3 cut(s) 481, 541, 616
EcoT14I CCWWGG 1 cut(s) 334
EcoT22I ATGCAT 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 334
FaeI CATG 3 cut(s) 184, 255, 613
FaiI YATR 8 cut(s) 97, 157, 159, 182, 253, 402, 420, 611
FatI CATG 3 cut(s) 180, 251, 609
FauI CCCGC 1 cut(s) 429
FbaI TGATCA 1 cut(s) 442
Fnu4HI GCNGC 6 cut(s) 14, 17, 222, 405, 570, 573
FokI GGATG 5 cut(s) 197, 278, 317, 566, 567
Fsp4HI GCNGC 6 cut(s) 14, 17, 222, 405, 570, 573
FspBI CTAG 1 cut(s) 335
GluI GCNGC 6 cut(s) 14, 17, 222, 405, 570, 573
GsaI CCCAGC 1 cut(s) 494
HaeIII GGCC 3 cut(s) 240, 256, 541
Hin1II CATG 3 cut(s) 184, 255, 613
HinfI GANTC 3 cut(s) 259, 353, 557
Hpy188I TCNGA 4 cut(s) 79, 229, 386, 447
Hpy188III TCNNGA 5 cut(s) 143, 263, 293, 313, 584
HpyAV CCTTC 5 cut(s) 52, 130, 216, 243, 488
HpyCH4III ACNGT 1 cut(s) 506
HpyCH4V TGCA 4 cut(s) 172, 251, 404, 565
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 221
HpyF3I CTNAG 2 cut(s) 48, 383
Hsp92II CATG 3 cut(s) 184, 255, 613
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 4 cut(s) 85, 309, 442, 474
LmnI GCTCC 2 cut(s) 33, 620
Lsp1109I GCAGC 6 cut(s) 25, 28, 208, 416, 581, 584
LweI GCATC 4 cut(s) 34, 175, 238, 416
MaeI CTAG 1 cut(s) 335
MalI GATC 4 cut(s) 87, 311, 444, 476
MboI GATC 4 cut(s) 85, 309, 442, 474
MboII GAAGA 8 cut(s) 67, 74, 145, 158, 475, 484, 512, 585
MflI RGATCY 1 cut(s) 474
MluCI AATT 2 cut(s) 105, 176
MlyI GAGTC 2 cut(s) 268, 347
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 7 cut(s) 58, 106, 370, 440, 441, 523, 531
Mph1103I ATGCAT 1 cut(s) 253
MseI TTAA 1 cut(s) 117
MspR9I CCNGG 3 cut(s) 483, 543, 618
MvaI CCWGG 3 cut(s) 483, 543, 618
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 2 cut(s) 25, 221
NdeII GATC 4 cut(s) 85, 309, 442, 474
NlaIII CATG 3 cut(s) 184, 255, 613
NlaIV GGNNCC 2 cut(s) 204, 615
NmeAIII GCCGAG 2 cut(s) 266, 282
NsiI ATGCAT 1 cut(s) 253
PaeR7I CTCGAG 1 cut(s) 275
PceI AGGCCT 1 cut(s) 541
PfeI GAWTC 1 cut(s) 557
PfoI TCCNGGA 1 cut(s) 616
PkrI GCNGC 6 cut(s) 15, 18, 223, 406, 571, 574
PleI GAGTC 2 cut(s) 267, 347
PpsI GAGTC 2 cut(s) 267, 347
PpuMI RGGWCCY 1 cut(s) 614
Psp5II RGGWCCY 1 cut(s) 614
Psp6I CCWGG 3 cut(s) 481, 541, 616
PspFI CCCAGC 1 cut(s) 490
PspGI CCWGG 3 cut(s) 481, 541, 616
PspN4I GGNNCC 2 cut(s) 204, 615
PspPI GGNCC 1 cut(s) 614
PspPPI RGGWCCY 1 cut(s) 614
PspXI VCTCGAGB 1 cut(s) 275
PstNI CAGNNNCTG 1 cut(s) 410
PsuI RGATCY 1 cut(s) 474
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 6 cut(s) 14, 17, 222, 405, 570, 573
Sau3AI GATC 4 cut(s) 85, 309, 442, 474
Sau96I GGNCC 1 cut(s) 614
SchI GAGTC 2 cut(s) 268, 347
ScrFI CCNGG 3 cut(s) 483, 543, 618
SfaNI GCATC 4 cut(s) 34, 175, 238, 416
Sfr274I CTCGAG 1 cut(s) 275
SinI GGWCC 1 cut(s) 614
SlaI CTCGAG 1 cut(s) 275
SmlI CTYRAG 3 cut(s) 275, 431, 458
SmoI CTYRAG 3 cut(s) 275, 431, 458
Sse9I AATT 2 cut(s) 105, 176
SseBI AGGCCT 1 cut(s) 541
SsiI CCGC 5 cut(s) 3, 40, 72, 110, 436
SspMI CTAG 1 cut(s) 335
StuI AGGCCT 1 cut(s) 541
StyD4I CCNGG 3 cut(s) 481, 541, 616
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 1 cut(s) 506
TaqI TCGA 3 cut(s) 21, 276, 356
TasI AATT 2 cut(s) 105, 176
TfiI GAWTC 1 cut(s) 557
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 2 cut(s) 88, 511
TseI GCWGC 6 cut(s) 13, 16, 221, 404, 569, 572
TspDTI ATGAA 3 cut(s) 141, 169, 485
TspRI CASTG 2 cut(s) 88, 511
VpaK11BI GGWCC 1 cut(s) 614
XapI RAATTY 1 cut(s) 176
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XhoI CTCGAG 1 cut(s) 275
XmaJI CCTAGG 1 cut(s) 334
XspI CTAG 1 cut(s) 335
Zsp2I ATGCAT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.