Rh7AG009700

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004076
Physical Location & Seq
Reverse (-)
667295 .. 669867
2573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG009700.1

Sequence Viewer

Length: 1278 bp
ATGGAAGCAGCCGCCACAGCGAGCGTGTTCCAATCATCAATTGCGGCCTTTAGGCCTTCGAATTCTGTCGGAAGATCCCGTCTTTTGATGGCCAGCGGTCCCAAGTTTATGCCTTTGGGACATTTGGGTTCCAAATCTCACTCCTCAATCAAGCAGCATCAGTTTTCAAATTCAGCTGGAAGAATGGGTTTTGGAATACGGAGGAGGTGCTTGGTAGTTAGGGCGTCGTATTCATCTCCGGACTCCGCTGGTTCTAGTGCTCCAATTGCTCCACTTCAGCTGGAGTCGCCGATTGGACAGTTCCTATCTCAGATGATGATAAGCCACCCTCACCTTGTGCCCACCGCAGTTGAGCAGCAGCTCGAACAGCTCCAAACTGACCGCGATGCTGAGCAGAAGAAGGAAGAGGCTTCCGCTTCGGACACTGATCTTGTGTTATACAGGAGAATTGCGGAGGTTAAAGCTAATGAAAGGAAGAAGGCTCTTGAAGAGATATTATATGCGTTAGTGGTGCAGAAATTCATGGATGCCAATGTTTCTTTGGTGCCTTCCATTGCCCCTGCTGCTTCAGACCCTTCTGGCCGAGTTGATGCATGGCCGAGTCAGGATGACAAGCTCGAGCGACTACATTCTCCTGAAGCCTACGAGATGATCCAGAACCACCTGTCTCTCATCCTAGGAAATCGGTTGGACGACTCGACCTCTTTAGCACAGATAAGCAAGCTCAGAGTGGGGCAGGTTTATGCAGCATCTGTAATGTATGGATACTTCCTCAAGCGGGTTGATCAGAGGTTTCAGCTTGAGAAGACAATGAAGATCCTTCCAGGTTCGCTGGGTGGAGAAGACAGTGATATTCAAAAAGCCGTGGGAGAGGACAAGAGGCCTGGTGGTGTGGATGATTCTTTGCAAGCAGCAGCTTCCCATCCTGAAGTATCTTCTTGGTCTGGGGGCATGGGTCCTGGAGCTTTTGGTAATGTGATCAAACCTTCCCGCTTGAGAACCTATGTCATGTCTGTCGATGGAGAGACCCTTCAAAGATACGCAACAATCAGATCGAGAGAGGCTGTTAGCATCATTGAAAAGCACACTGAGGCGTTGTTTGGAAAACCTGATATTGTTATAACACCTCAGGGAACTGTTGATTCTTCCAATGATGAACACATCAAAATTAGCTTTGGTGGTTTGAAGAGACTTGTTTTGGAAGCTGTGACTTTCGGTTCTTTCCTCTGGGATGTTGAGAGCTATGTGGATTCCAGGTACCATTTTGTTACGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0006950 GO:0006979 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0010035 GO:0010193 GO:0010224 GO:0042221 GO:0042493 GO:0046677 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

425

Amino Acids

46.5

Weight (kDa)

6.61

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 146 - 271 5.2e-21 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1121
Acc36I ACCTGC 1 cut(s) 727
Acc65I GGTACC 1 cut(s) 1257
AccB1I GGYRCC 2 cut(s) 544, 1257
AccII CGCG 1 cut(s) 384
AccIII TCCGGA 1 cut(s) 238
AclWI GGATC 3 cut(s) 69, 646, 811
AcoI YGGCCR 3 cut(s) 90, 580, 596
AcsI RAATTY 3 cut(s) 61, 169, 518
AcuI CTGAAG 4 cut(s) 260, 552, 657, 948
AcyI GRCGYC 1 cut(s) 224
AdeI CACNNNGTG 1 cut(s) 337
AfaI GTAC 1 cut(s) 1259
AfiI CCNNNNNNNGG 1 cut(s) 778
AgsI TTSAA 6 cut(s) 168, 488, 857, 1034, 1079, 1186
AjnI CCWGG 4 cut(s) 823, 883, 958, 1253
Alw21I GWGCWC 1 cut(s) 262
Alw26I GTCTC 3 cut(s) 672, 1019, 1183
AlwI GGATC 3 cut(s) 69, 646, 811
AlwNI CAGNNNCTG 1 cut(s) 752
Ama87I CYCGRG 1 cut(s) 617
Aor13HI TCCGGA 1 cut(s) 238
AoxI GGCC 6 cut(s) 45, 53, 90, 580, 596, 881
ApeKI GCWGC 8 cut(s) 8, 154, 355, 358, 563, 746, 911, 914
ApoI RAATTY 3 cut(s) 61, 169, 518
Asp718I GGTACC 1 cut(s) 1257
AspA2I CCTAGG 1 cut(s) 676
AspS9I GGNCC 2 cut(s) 98, 956
AsuHPI GGTGA 1 cut(s) 323
AsuII TTCGAA 1 cut(s) 59
AvaI CYCGRG 1 cut(s) 617
AvaII GGWCC 2 cut(s) 98, 956
AvrII CCTAGG 1 cut(s) 676
AxyI CCTNAGG 1 cut(s) 1128
BaeGI GKGCMC 1 cut(s) 342
BalI TGGCCA 1 cut(s) 92
BanI GGYRCC 2 cut(s) 544, 1257
BarI GAAGNNNNNNTAC 2 cut(s) 752, 784
BbsI GAAGAC 2 cut(s) 812, 849
Bbv12I GWGCWC 1 cut(s) 262
BbvI GCAGC 8 cut(s) 20, 166, 367, 370, 550, 758, 923, 926
BccI CCATC 3 cut(s) 82, 930, 1013
BceAI ACGGC 1 cut(s) 848
BciT130I CCWGG 4 cut(s) 825, 885, 960, 1255
BciVI GTATCC 1 cut(s) 758
BclI TGATCA 2 cut(s) 784, 978
BcoDI GTCTC 3 cut(s) 672, 1019, 1183
BfaI CTAG 2 cut(s) 255, 677
BfuAI ACCTGC 1 cut(s) 727
BfuI GTATCC 1 cut(s) 758
BlnI CCTAGG 1 cut(s) 676
BlpI GCTNAGC 1 cut(s) 390
Bme1390I CCNGG 4 cut(s) 825, 885, 960, 1255
Bme18I GGWCC 2 cut(s) 98, 956
BmeT110I CYCGRG 1 cut(s) 617
BmgT120I GGNCC 2 cut(s) 98, 956
BmiI GGNNCC 5 cut(s) 100, 130, 546, 957, 1259
BmrFI CCNGG 4 cut(s) 825, 885, 960, 1255
BmsI GCATC 6 cut(s) 166, 376, 517, 580, 758, 1080
BpiI GAAGAC 2 cut(s) 812, 849
BpmI CTGGAG 2 cut(s) 302, 981
Bpu1102I GCTNAGC 1 cut(s) 390
Bpu14I TTCGAA 1 cut(s) 59
BpuEI CTTGAG 3 cut(s) 758, 821, 1015
BsaHI GRCGYC 1 cut(s) 224
BsaI GGTCTC 1 cut(s) 1019
BsaJI CCNNGG 2 cut(s) 676, 864
BsaWI WCCGGW 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 778
Bse21I CCTNAGG 1 cut(s) 1128
Bse3DI GCAATG 1 cut(s) 552
BseAI TCCGGA 1 cut(s) 238
BseBI CCWGG 4 cut(s) 825, 885, 960, 1255
BseDI CCNNGG 2 cut(s) 676, 864
BseGI GGATG 6 cut(s) 532, 613, 672, 901, 922, 1237
BseLI CCNNNNNNNGG 1 cut(s) 778
BseMI GCAATG 1 cut(s) 552
BseMII CTCAG 5 cut(s) 323, 381, 739, 1080, 1142
BseRI GAGGAG 2 cut(s) 133, 217
BseSI GKGCMC 1 cut(s) 342
BseXI GCAGC 8 cut(s) 20, 166, 367, 370, 550, 758, 923, 926
BseYI CCCAGC 1 cut(s) 832
BsgI GTGCAG 1 cut(s) 533
Bsh1236I CGCG 1 cut(s) 384
BshFI GGCC 6 cut(s) 47, 55, 92, 582, 598, 883
BshNI GGYRCC 2 cut(s) 544, 1257
BsiHKAI GWGCWC 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 617
BsiSI CCGG 1 cut(s) 239
BslFI GGGAC 2 cut(s) 84, 132
BslI CCNNNNNNNGG 1 cut(s) 778
BsmAI GTCTC 3 cut(s) 672, 1019, 1183
BsmFI GGGAC 2 cut(s) 84, 132
BsnI GGCC 6 cut(s) 47, 55, 92, 582, 598, 883
Bso31I GGTCTC 1 cut(s) 1019
BsoBI CYCGRG 1 cut(s) 617
Bsp119I TTCGAA 1 cut(s) 59
Bsp1286I GDGCHC 2 cut(s) 262, 342
Bsp13I TCCGGA 1 cut(s) 238
Bsp143I GATC 7 cut(s) 74, 427, 651, 784, 816, 978, 1052
Bsp1720I GCTNAGC 1 cut(s) 390
BspANI GGCC 6 cut(s) 47, 55, 92, 582, 598, 883
BspCNI CTCAG 5 cut(s) 322, 382, 738, 1081, 1141
BspEI TCCGGA 1 cut(s) 238
BspFNI CGCG 1 cut(s) 384
BspLI GGNNCC 5 cut(s) 100, 130, 546, 957, 1259
BspMI ACCTGC 1 cut(s) 727
BspPI GGATC 3 cut(s) 69, 646, 811
BspT104I TTCGAA 1 cut(s) 59
BspT107I GGYRCC 2 cut(s) 544, 1257
BspTNI GGTCTC 1 cut(s) 1019
BsrDI GCAATG 1 cut(s) 552
BssECI CCNNGG 2 cut(s) 676, 864
BssMI GATC 7 cut(s) 74, 427, 651, 784, 816, 978, 1052
BssNI GRCGYC 1 cut(s) 224
BssT1I CCWWGG 1 cut(s) 676
Bst2UI CCWGG 4 cut(s) 825, 885, 960, 1255
Bst4CI ACNGT 3 cut(s) 300, 848, 1138
Bst6I CTCTTC 3 cut(s) 399, 483, 1181
BstACI GRCGYC 1 cut(s) 224
BstBI TTCGAA 1 cut(s) 59
BstC8I GCNNGC 4 cut(s) 22, 94, 722, 909
BstDEI CTNAG 5 cut(s) 309, 390, 725, 1089, 1128
BstDSI CCRYGG 1 cut(s) 864
BstF5I GGATG 6 cut(s) 532, 613, 672, 901, 922, 1237
BstFNI CGCG 1 cut(s) 384
BstKTI GATC 7 cut(s) 77, 430, 654, 787, 819, 981, 1055
BstMAI GTCTC 3 cut(s) 672, 1019, 1183
BstMBI GATC 7 cut(s) 74, 427, 651, 784, 816, 978, 1052
BstMWI GCNNNNNNNGC 5 cut(s) 17, 266, 286, 367, 563
BstNI CCWGG 4 cut(s) 825, 885, 960, 1255
BstSCI CCNGG 4 cut(s) 823, 883, 958, 1253
BstSLI GKGCMC 1 cut(s) 342
BstUI CGCG 1 cut(s) 384
BstV1I GCAGC 8 cut(s) 20, 166, 367, 370, 550, 758, 923, 926
BstV2I GAAGAC 2 cut(s) 812, 849
BstX2I RGATCY 2 cut(s) 74, 816
BstYI RGATCY 2 cut(s) 74, 816
Bsu36I CCTNAGG 1 cut(s) 1128
BsuI GTATCC 1 cut(s) 758
BsuRI GGCC 6 cut(s) 47, 55, 92, 582, 598, 883
BtgI CCRYGG 1 cut(s) 864
BtgZI GCGATG 1 cut(s) 399
BtsCI GGATG 6 cut(s) 532, 613, 672, 901, 922, 1237
BtsIMutI CAGTG 3 cut(s) 423, 853, 1086
BveI ACCTGC 1 cut(s) 727
Cac8I GCNNGC 4 cut(s) 22, 94, 722, 909
CaiI CAGNNNCTG 1 cut(s) 752
Cfr13I GGNCC 2 cut(s) 98, 956
CseI GACGC 1 cut(s) 213
Csp6I GTAC 1 cut(s) 1258
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviAII CATG 4 cut(s) 523, 594, 952, 1009
CviQI GTAC 1 cut(s) 1258
DdeI CTNAG 5 cut(s) 309, 390, 725, 1089, 1128
DpnI GATC 7 cut(s) 76, 429, 653, 786, 818, 980, 1054
DpnII GATC 7 cut(s) 74, 427, 651, 784, 816, 978, 1052
DraIII CACNNNGTG 1 cut(s) 337
EaeI YGGCCR 3 cut(s) 90, 580, 596
Eam1104I CTCTTC 3 cut(s) 399, 483, 1181
EarI CTCTTC 3 cut(s) 399, 483, 1181
Eco130I CCWWGG 1 cut(s) 676
Eco147I AGGCCT 2 cut(s) 55, 883
Eco31I GGTCTC 1 cut(s) 1019
Eco47I GGWCC 2 cut(s) 98, 956
Eco57I CTGAAG 4 cut(s) 260, 552, 657, 948
Eco81I CCTNAGG 1 cut(s) 1128
Eco88I CYCGRG 1 cut(s) 617
EcoO109I RGGNCCY 1 cut(s) 956
EcoRI GAATTC 1 cut(s) 61
EcoRII CCWGG 4 cut(s) 823, 883, 958, 1253
EcoT14I CCWWGG 1 cut(s) 676
EcoT22I ATGCAT 1 cut(s) 595
ErhI CCWWGG 1 cut(s) 676
FaeI CATG 4 cut(s) 526, 597, 955, 1012
FaqI GGGAC 2 cut(s) 84, 132
FatI CATG 4 cut(s) 522, 593, 951, 1008
FauI CCCGC 2 cut(s) 771, 998
FbaI TGATCA 2 cut(s) 784, 978
FokI GGATG 6 cut(s) 539, 620, 659, 908, 909, 1244
FspBI CTAG 2 cut(s) 255, 677
GsaI CCCAGC 1 cut(s) 836
GsuI CTGGAG 2 cut(s) 302, 981
HaeIII GGCC 6 cut(s) 47, 55, 92, 582, 598, 883
HapII CCGG 1 cut(s) 239
HgaI GACGC 1 cut(s) 213
Hin1I GRCGYC 1 cut(s) 224
Hin1II CATG 4 cut(s) 526, 597, 955, 1012
HinfI GANTC 7 cut(s) 242, 284, 601, 695, 899, 1142, 1250
HpaII CCGG 1 cut(s) 239
HphI GGTGA 1 cut(s) 323
Hpy188I TCNGA 7 cut(s) 71, 312, 421, 571, 728, 789, 1052
Hpy188III TCNNGA 7 cut(s) 239, 485, 605, 635, 655, 926, 1056
Hpy99I CGWCG 1 cut(s) 229
HpyAV CCTTC 8 cut(s) 66, 394, 472, 558, 585, 830, 996, 1040
HpyCH4III ACNGT 3 cut(s) 300, 848, 1138
HpyCH4V TGCA 4 cut(s) 514, 593, 746, 907
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 266, 286, 367, 563
HpyF3I CTNAG 5 cut(s) 309, 390, 725, 1089, 1128
Hsp92I GRCGYC 1 cut(s) 224
Hsp92II CATG 4 cut(s) 526, 597, 955, 1012
Kpn2I TCCGGA 1 cut(s) 238
KpnI GGTACC 1 cut(s) 1261
Ksp22I TGATCA 2 cut(s) 784, 978
Kzo9I GATC 7 cut(s) 74, 427, 651, 784, 816, 978, 1052
LmnI GCTCC 4 cut(s) 265, 274, 375, 962
Lsp1109I GCAGC 8 cut(s) 20, 166, 367, 370, 550, 758, 923, 926
LweI GCATC 6 cut(s) 166, 376, 517, 580, 758, 1080
MaeI CTAG 2 cut(s) 255, 677
MaeIII GTNAC 2 cut(s) 1207, 1267
MalI GATC 7 cut(s) 76, 429, 653, 786, 818, 980, 1054
MboI GATC 7 cut(s) 74, 427, 651, 784, 816, 978, 1052
MfeI CAATTG 2 cut(s) 39, 264
MflI RGATCY 2 cut(s) 74, 816
MhlI GDGCHC 2 cut(s) 262, 342
MlsI TGGCCA 1 cut(s) 92
MluCI AATT 7 cut(s) 39, 61, 169, 264, 447, 518, 1167
MluNI TGGCCA 1 cut(s) 92
MlyI GAGTC 4 cut(s) 236, 293, 610, 689
MmeI TCCRAC 2 cut(s) 49, 669
Mox20I TGGCCA 1 cut(s) 92
Mph1103I ATGCAT 1 cut(s) 595
MroI TCCGGA 1 cut(s) 238
MscI TGGCCA 1 cut(s) 92
MseI TTAA 1 cut(s) 459
Msp20I TGGCCA 1 cut(s) 92
MspA1I CMGCKG 4 cut(s) 96, 176, 248, 280
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 4 cut(s) 825, 885, 960, 1255
MunI CAATTG 2 cut(s) 39, 264
MvaI CCWGG 4 cut(s) 825, 885, 960, 1255
MvnI CGCG 1 cut(s) 384
MwoI GCNNNNNNNGC 5 cut(s) 17, 266, 286, 367, 563
NdeII GATC 7 cut(s) 74, 427, 651, 784, 816, 978, 1052
NlaIII CATG 4 cut(s) 526, 597, 955, 1012
NlaIV GGNNCC 5 cut(s) 100, 130, 546, 957, 1259
NmeAIII GCCGAG 2 cut(s) 608, 624
NmuCI GTSAC 1 cut(s) 1207
NsiI ATGCAT 1 cut(s) 595
NspV TTCGAA 1 cut(s) 59
PaeR7I CTCGAG 1 cut(s) 617
PceI AGGCCT 2 cut(s) 55, 883
PfeI GAWTC 3 cut(s) 899, 1142, 1250
PfoI TCCNGGA 1 cut(s) 958
PleI GAGTC 4 cut(s) 236, 292, 609, 689
PpsI GAGTC 4 cut(s) 236, 292, 609, 689
PpuMI RGGWCCY 1 cut(s) 956
PsiI TTATAA 1 cut(s) 1121
Psp5II RGGWCCY 1 cut(s) 956
Psp6I CCWGG 4 cut(s) 823, 883, 958, 1253
PspFI CCCAGC 1 cut(s) 832
PspGI CCWGG 4 cut(s) 823, 883, 958, 1253
PspN4I GGNNCC 5 cut(s) 100, 130, 546, 957, 1259
PspPI GGNCC 2 cut(s) 98, 956
PspPPI RGGWCCY 1 cut(s) 956
PspXI VCTCGAGB 1 cut(s) 617
PstNI CAGNNNCTG 1 cut(s) 752
PsuI RGATCY 2 cut(s) 74, 816
PvuII CAGCTG 2 cut(s) 176, 280
RsaI GTAC 1 cut(s) 1259
RsaNI GTAC 1 cut(s) 1258
SaqAI TTAA 1 cut(s) 459
Sau3AI GATC 7 cut(s) 74, 427, 651, 784, 816, 978, 1052
Sau96I GGNCC 2 cut(s) 98, 956
SchI GAGTC 4 cut(s) 236, 293, 610, 689
ScrFI CCNGG 4 cut(s) 825, 885, 960, 1255
SduI GDGCHC 2 cut(s) 262, 342
SfaNI GCATC 6 cut(s) 166, 376, 517, 580, 758, 1080
Sfr274I CTCGAG 1 cut(s) 617
SfuI TTCGAA 1 cut(s) 59
SinI GGWCC 2 cut(s) 98, 956
SlaI CTCGAG 1 cut(s) 617
SmlI CTYRAG 4 cut(s) 617, 773, 800, 994
SmoI CTYRAG 4 cut(s) 617, 773, 800, 994
Sse9I AATT 7 cut(s) 39, 61, 169, 264, 447, 518, 1167
SseBI AGGCCT 2 cut(s) 55, 883
SspMI CTAG 2 cut(s) 255, 677
StuI AGGCCT 2 cut(s) 55, 883
StyD4I CCNGG 4 cut(s) 823, 883, 958, 1253
StyI CCWWGG 1 cut(s) 676
TaaI ACNGT 3 cut(s) 300, 848, 1138
TaqI TCGA 6 cut(s) 59, 363, 618, 698, 1017, 1055
TasI AATT 7 cut(s) 39, 61, 169, 264, 447, 518, 1167
TauI GCSGC 2 cut(s) 14, 47
TfiI GAWTC 3 cut(s) 899, 1142, 1250
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TscAI CASTG 3 cut(s) 430, 853, 1093
TseFI GTSAC 1 cut(s) 1207
TseI GCWGC 8 cut(s) 8, 154, 355, 358, 563, 746, 911, 914
Tsp45I GTSAC 1 cut(s) 1207
TspDTI ATGAA 5 cut(s) 222, 483, 511, 827, 1170
TspGWI ACGGA 1 cut(s) 214
TspRI CASTG 3 cut(s) 430, 853, 1093
VpaK11BI GGWCC 2 cut(s) 98, 956
XapI RAATTY 3 cut(s) 61, 169, 518
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
XhoI CTCGAG 1 cut(s) 617
XmaJI CCTAGG 1 cut(s) 676
XspI CTAG 2 cut(s) 255, 677
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.