Rh7CG009900

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004076
Physical Location & Seq
Reverse (-)
777415 .. 780446
3032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG009900.1

Sequence Viewer

Length: 1269 bp
ATGGAAGCAGCCGCCGCACCGAGTGTGTTCCAATCATCAATTGCGGCCTTTAGGCCTTCGAATTCTGTCGGAAGATCCCGTCTTTTGATGGCCAGCGGTCCCAAGTTTATGCCTTTGGGTTCCAAATCTCACTCCTCAATCAAGCAGCATGAGTTTTCAAATTCAGCTGGAAGAATGGGTTTTGGAATACGGAGGAGGTGCTTGGTAGTTAGGGCGTCGTCTTCATCTCCGGACTCTGCTGGTTCTAGTGCTCCAATTGCTCCACTTCAGCTGGAGTCGCCGATTGGACAGTTCCTATCTCAGATGATGATAAGCCACCCTCACCTTGTGCCTACCGCAGTTGAGCAGCAGCTCGAACAGCTCCAAACTGACCGCGATGCTGAGCAGAAGAAGGAAGAGGCTTCCGCTTCAGACACTGATCTTGTGTTATACAGGAGAATTGCGGAGGTTAAAGCTAATGAAAGGAAGAAGGCTCTTGAAGAGATATTATATGCGTTAGTGGTGCAGAAATTCATGGATGCCAATGTTTCTTTGGTGCCTTCCATTGCCCCTGCTGCTTCAGACCCTTCTGGCCGAGTTGATGCATGGCCGAGTCAGGATGACAAGCTCGAGCGACTACATTCTCCTGAAGCCTACGAGATGATCCAGAACCACCTGTCTCTCATCCTAGGAAATCGGTTGGACGACTCGACCTCTTTAGCACAGATAAGCAAGCTCAGAGTGGGGCAGGTTTATGCAGCGTCTGTAATGTATGGATACTTCCTCAAGCGGGTTGATCAGAGGTTTCAGCTTGAGAAGACAATGAAGATCCTTCCAGGTTCGCTGGGTGGAGAAGACAGTGATATTCAAAAAGCCGTGGGAGAGGACAAGAGGCCTGGTGCTGTGGATGATTCTTTGCAAGCAGCAGCTTCCCATCCTGAAGTATCTTCTTGGTCTGGGGGCATGGATCCTGGAGCTTTTGGTAATGTGATCAAACCTTCCCGCTTGAGAACCTATGTGATGTCTGTCGATGGAGAGACCCTTCAAAGATACGCAACAATCAGATCGAGAGAGGCTGTTAGCATCATTGAAAAGCACACTGAGGCGTTGTTTGGAAAACCTGATATTGTTATAACACCTCAGGGAACTGTTGATTCTTCCAAGGATGAACACATCAAAATTAGCTTTGGTGGTTTGAAGAGACTTGTTTTGGAAGCTGTGACTTTCGGTTCTTTCCTCTGGGATGTTGAGAGCTATGTGGATTCCAGGTACCATTTTGTTACGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0006950 GO:0006979 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0010035 GO:0010193 GO:0010224 GO:0042221 GO:0042493 GO:0046677 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

422

Amino Acids

46.2

Weight (kDa)

6.39

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 143 - 268 5.1e-21 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1112
Acc36I ACCTGC 1 cut(s) 718
Acc65I GGTACC 1 cut(s) 1248
AccB1I GGYRCC 2 cut(s) 535, 1248
AccII CGCG 1 cut(s) 375
AccIII TCCGGA 1 cut(s) 229
AclWI GGATC 5 cut(s) 69, 637, 802, 941, 954
AcoI YGGCCR 3 cut(s) 90, 571, 587
AcsI RAATTY 3 cut(s) 61, 160, 509
AcuI CTGAAG 5 cut(s) 251, 393, 543, 648, 939
AcyI GRCGYC 1 cut(s) 215
AdeI CACNNNGTG 2 cut(s) 23, 328
AfaI GTAC 1 cut(s) 1250
AfiI CCNNNNNNNGG 1 cut(s) 769
AgsI TTSAA 6 cut(s) 159, 479, 848, 1025, 1070, 1177
AjnI CCWGG 4 cut(s) 814, 874, 949, 1244
Alw21I GWGCWC 1 cut(s) 253
Alw26I GTCTC 3 cut(s) 663, 1010, 1174
AlwI GGATC 5 cut(s) 69, 637, 802, 941, 954
AlwNI CAGNNNCTG 2 cut(s) 416, 743
Ama87I CYCGRG 1 cut(s) 608
Aor13HI TCCGGA 1 cut(s) 229
AoxI GGCC 6 cut(s) 45, 53, 90, 571, 587, 872
ApeKI GCWGC 8 cut(s) 8, 145, 346, 349, 554, 737, 902, 905
ApoI RAATTY 3 cut(s) 61, 160, 509
Asp718I GGTACC 1 cut(s) 1248
AspA2I CCTAGG 1 cut(s) 667
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 314
AsuII TTCGAA 1 cut(s) 59
AvaI CYCGRG 1 cut(s) 608
AvaII GGWCC 1 cut(s) 98
AvrII CCTAGG 1 cut(s) 667
AxyI CCTNAGG 1 cut(s) 1119
BalI TGGCCA 1 cut(s) 92
BamHI GGATCC 1 cut(s) 946
BanI GGYRCC 2 cut(s) 535, 1248
BarI GAAGNNNNNNTAC 2 cut(s) 743, 775
BbsI GAAGAC 3 cut(s) 213, 803, 840
Bbv12I GWGCWC 1 cut(s) 253
BbvI GCAGC 8 cut(s) 20, 157, 358, 361, 541, 749, 914, 917
BccI CCATC 3 cut(s) 82, 921, 1004
BceAI ACGGC 1 cut(s) 839
BciT130I CCWGG 4 cut(s) 816, 876, 951, 1246
BciVI GTATCC 1 cut(s) 749
BclI TGATCA 2 cut(s) 775, 969
BcoDI GTCTC 3 cut(s) 663, 1010, 1174
BfaI CTAG 2 cut(s) 246, 668
BfuAI ACCTGC 1 cut(s) 718
BfuI GTATCC 1 cut(s) 749
BlnI CCTAGG 1 cut(s) 667
BlpI GCTNAGC 1 cut(s) 381
Bme1390I CCNGG 4 cut(s) 816, 876, 951, 1246
Bme18I GGWCC 1 cut(s) 98
BmeT110I CYCGRG 1 cut(s) 608
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 5 cut(s) 100, 121, 537, 948, 1250
BmrFI CCNGG 4 cut(s) 816, 876, 951, 1246
BmsI GCATC 4 cut(s) 367, 508, 571, 1071
BpiI GAAGAC 3 cut(s) 213, 803, 840
BpmI CTGGAG 2 cut(s) 293, 972
Bpu1102I GCTNAGC 1 cut(s) 381
Bpu14I TTCGAA 1 cut(s) 59
BpuEI CTTGAG 3 cut(s) 749, 812, 1006
BsaHI GRCGYC 1 cut(s) 215
BsaI GGTCTC 1 cut(s) 1010
BsaJI CCNNGG 3 cut(s) 667, 855, 1140
BsaWI WCCGGW 1 cut(s) 229
Bsc4I CCNNNNNNNGG 1 cut(s) 769
Bse21I CCTNAGG 1 cut(s) 1119
Bse3DI GCAATG 1 cut(s) 543
BseAI TCCGGA 1 cut(s) 229
BseBI CCWGG 4 cut(s) 816, 876, 951, 1246
BseDI CCNNGG 3 cut(s) 667, 855, 1140
BseGI GGATG 7 cut(s) 523, 604, 663, 892, 913, 1150, 1228
BseLI CCNNNNNNNGG 1 cut(s) 769
BseMI GCAATG 1 cut(s) 543
BseMII CTCAG 5 cut(s) 314, 372, 730, 1071, 1133
BseRI GAGGAG 2 cut(s) 124, 208
BseXI GCAGC 8 cut(s) 20, 157, 358, 361, 541, 749, 914, 917
BseYI CCCAGC 1 cut(s) 823
BsgI GTGCAG 1 cut(s) 524
Bsh1236I CGCG 1 cut(s) 375
BshFI GGCC 6 cut(s) 47, 55, 92, 573, 589, 874
BshNI GGYRCC 2 cut(s) 535, 1248
BsiHKAI GWGCWC 1 cut(s) 253
BsiHKCI CYCGRG 1 cut(s) 608
BsiSI CCGG 1 cut(s) 230
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 769
BsmAI GTCTC 3 cut(s) 663, 1010, 1174
BsmFI GGGAC 1 cut(s) 84
BsnI GGCC 6 cut(s) 47, 55, 92, 573, 589, 874
Bso31I GGTCTC 1 cut(s) 1010
BsoBI CYCGRG 1 cut(s) 608
Bsp119I TTCGAA 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 253
Bsp13I TCCGGA 1 cut(s) 229
Bsp143I GATC 8 cut(s) 74, 418, 642, 775, 807, 946, 969, 1043
Bsp1720I GCTNAGC 1 cut(s) 381
BspANI GGCC 6 cut(s) 47, 55, 92, 573, 589, 874
BspCNI CTCAG 5 cut(s) 313, 373, 729, 1072, 1132
BspEI TCCGGA 1 cut(s) 229
BspFNI CGCG 1 cut(s) 375
BspLI GGNNCC 5 cut(s) 100, 121, 537, 948, 1250
BspMI ACCTGC 1 cut(s) 718
BspPI GGATC 5 cut(s) 69, 637, 802, 941, 954
BspT104I TTCGAA 1 cut(s) 59
BspT107I GGYRCC 2 cut(s) 535, 1248
BspTNI GGTCTC 1 cut(s) 1010
BsrDI GCAATG 1 cut(s) 543
BssECI CCNNGG 3 cut(s) 667, 855, 1140
BssMI GATC 8 cut(s) 74, 418, 642, 775, 807, 946, 969, 1043
BssNI GRCGYC 1 cut(s) 215
BssT1I CCWWGG 2 cut(s) 667, 1140
Bst2UI CCWGG 4 cut(s) 816, 876, 951, 1246
Bst4CI ACNGT 3 cut(s) 291, 839, 1129
Bst6I CTCTTC 3 cut(s) 390, 474, 1172
BstACI GRCGYC 1 cut(s) 215
BstBI TTCGAA 1 cut(s) 59
BstC8I GCNNGC 3 cut(s) 94, 713, 900
BstDEI CTNAG 5 cut(s) 300, 381, 716, 1080, 1119
BstDSI CCRYGG 1 cut(s) 855
BstF5I GGATG 7 cut(s) 523, 604, 663, 892, 913, 1150, 1228
BstFNI CGCG 1 cut(s) 375
BstKTI GATC 8 cut(s) 77, 421, 645, 778, 810, 949, 972, 1046
BstMAI GTCTC 3 cut(s) 663, 1010, 1174
BstMBI GATC 8 cut(s) 74, 418, 642, 775, 807, 946, 969, 1043
BstMWI GCNNNNNNNGC 5 cut(s) 14, 257, 277, 358, 554
BstNI CCWGG 4 cut(s) 816, 876, 951, 1246
BstSCI CCNGG 4 cut(s) 814, 874, 949, 1244
BstUI CGCG 1 cut(s) 375
BstV1I GCAGC 8 cut(s) 20, 157, 358, 361, 541, 749, 914, 917
BstV2I GAAGAC 3 cut(s) 213, 803, 840
BstX2I RGATCY 3 cut(s) 74, 807, 946
BstYI RGATCY 3 cut(s) 74, 807, 946
Bsu36I CCTNAGG 1 cut(s) 1119
BsuI GTATCC 1 cut(s) 749
BsuRI GGCC 6 cut(s) 47, 55, 92, 573, 589, 874
BtgI CCRYGG 1 cut(s) 855
BtgZI GCGATG 1 cut(s) 390
BtsCI GGATG 7 cut(s) 523, 604, 663, 892, 913, 1150, 1228
BtsIMutI CAGTG 3 cut(s) 414, 844, 1077
BveI ACCTGC 1 cut(s) 718
Cac8I GCNNGC 3 cut(s) 94, 713, 900
CaiI CAGNNNCTG 2 cut(s) 416, 743
Cfr13I GGNCC 1 cut(s) 98
CseI GACGC 2 cut(s) 204, 729
Csp6I GTAC 1 cut(s) 1249
CviAII CATG 4 cut(s) 149, 514, 585, 943
CviQI GTAC 1 cut(s) 1249
DdeI CTNAG 5 cut(s) 300, 381, 716, 1080, 1119
DpnI GATC 8 cut(s) 76, 420, 644, 777, 809, 948, 971, 1045
DpnII GATC 8 cut(s) 74, 418, 642, 775, 807, 946, 969, 1043
DraIII CACNNNGTG 2 cut(s) 23, 328
EaeI YGGCCR 3 cut(s) 90, 571, 587
Eam1104I CTCTTC 3 cut(s) 390, 474, 1172
EarI CTCTTC 3 cut(s) 390, 474, 1172
Eco130I CCWWGG 2 cut(s) 667, 1140
Eco147I AGGCCT 2 cut(s) 55, 874
Eco31I GGTCTC 1 cut(s) 1010
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 5 cut(s) 251, 393, 543, 648, 939
Eco81I CCTNAGG 1 cut(s) 1119
Eco88I CYCGRG 1 cut(s) 608
EcoRI GAATTC 1 cut(s) 61
EcoRII CCWGG 4 cut(s) 814, 874, 949, 1244
EcoT14I CCWWGG 2 cut(s) 667, 1140
EcoT22I ATGCAT 1 cut(s) 586
ErhI CCWWGG 2 cut(s) 667, 1140
FaeI CATG 4 cut(s) 152, 517, 588, 946
FaqI GGGAC 1 cut(s) 84
FatI CATG 4 cut(s) 148, 513, 584, 942
FauI CCCGC 2 cut(s) 762, 989
FbaI TGATCA 2 cut(s) 775, 969
FokI GGATG 7 cut(s) 530, 611, 650, 899, 900, 1157, 1235
FspBI CTAG 2 cut(s) 246, 668
GsaI CCCAGC 1 cut(s) 827
GsuI CTGGAG 2 cut(s) 293, 972
HaeIII GGCC 6 cut(s) 47, 55, 92, 573, 589, 874
HapII CCGG 1 cut(s) 230
HgaI GACGC 2 cut(s) 204, 729
Hin1I GRCGYC 1 cut(s) 215
Hin1II CATG 4 cut(s) 152, 517, 588, 946
HinfI GANTC 7 cut(s) 233, 275, 592, 686, 890, 1133, 1241
HpaII CCGG 1 cut(s) 230
HphI GGTGA 1 cut(s) 314
Hpy188I TCNGA 7 cut(s) 71, 303, 412, 562, 719, 780, 1043
Hpy188III TCNNGA 7 cut(s) 230, 476, 596, 626, 646, 917, 1047
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 8 cut(s) 66, 385, 463, 549, 576, 821, 987, 1031
HpyCH4III ACNGT 3 cut(s) 291, 839, 1129
HpyCH4V TGCA 4 cut(s) 505, 584, 737, 898
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 257, 277, 358, 554
HpyF3I CTNAG 5 cut(s) 300, 381, 716, 1080, 1119
Hsp92I GRCGYC 1 cut(s) 215
Hsp92II CATG 4 cut(s) 152, 517, 588, 946
Kpn2I TCCGGA 1 cut(s) 229
KpnI GGTACC 1 cut(s) 1252
Ksp22I TGATCA 2 cut(s) 775, 969
Kzo9I GATC 8 cut(s) 74, 418, 642, 775, 807, 946, 969, 1043
LmnI GCTCC 4 cut(s) 256, 265, 366, 953
Lsp1109I GCAGC 8 cut(s) 20, 157, 358, 361, 541, 749, 914, 917
LweI GCATC 4 cut(s) 367, 508, 571, 1071
MaeI CTAG 2 cut(s) 246, 668
MaeIII GTNAC 2 cut(s) 1198, 1258
MalI GATC 8 cut(s) 76, 420, 644, 777, 809, 948, 971, 1045
MboI GATC 8 cut(s) 74, 418, 642, 775, 807, 946, 969, 1043
MfeI CAATTG 2 cut(s) 39, 255
MflI RGATCY 3 cut(s) 74, 807, 946
MhlI GDGCHC 1 cut(s) 253
MlsI TGGCCA 1 cut(s) 92
MluCI AATT 7 cut(s) 39, 61, 160, 255, 438, 509, 1158
MluNI TGGCCA 1 cut(s) 92
MlyI GAGTC 4 cut(s) 227, 284, 601, 680
MmeI TCCRAC 2 cut(s) 49, 660
Mox20I TGGCCA 1 cut(s) 92
Mph1103I ATGCAT 1 cut(s) 586
MroI TCCGGA 1 cut(s) 229
MscI TGGCCA 1 cut(s) 92
MseI TTAA 1 cut(s) 450
Msp20I TGGCCA 1 cut(s) 92
MspA1I CMGCKG 3 cut(s) 96, 167, 271
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 4 cut(s) 816, 876, 951, 1246
MunI CAATTG 2 cut(s) 39, 255
MvaI CCWGG 4 cut(s) 816, 876, 951, 1246
MvnI CGCG 1 cut(s) 375
MwoI GCNNNNNNNGC 5 cut(s) 14, 257, 277, 358, 554
NdeII GATC 8 cut(s) 74, 418, 642, 775, 807, 946, 969, 1043
NlaIII CATG 4 cut(s) 152, 517, 588, 946
NlaIV GGNNCC 5 cut(s) 100, 121, 537, 948, 1250
NmeAIII GCCGAG 2 cut(s) 599, 615
NmuCI GTSAC 1 cut(s) 1198
NsiI ATGCAT 1 cut(s) 586
NspV TTCGAA 1 cut(s) 59
PaeR7I CTCGAG 1 cut(s) 608
PceI AGGCCT 2 cut(s) 55, 874
PfeI GAWTC 3 cut(s) 890, 1133, 1241
PfoI TCCNGGA 1 cut(s) 949
PleI GAGTC 4 cut(s) 227, 283, 600, 680
PpsI GAGTC 4 cut(s) 227, 283, 600, 680
PsiI TTATAA 1 cut(s) 1112
Psp6I CCWGG 4 cut(s) 814, 874, 949, 1244
PspFI CCCAGC 1 cut(s) 823
PspGI CCWGG 4 cut(s) 814, 874, 949, 1244
PspN4I GGNNCC 5 cut(s) 100, 121, 537, 948, 1250
PspPI GGNCC 1 cut(s) 98
PspXI VCTCGAGB 1 cut(s) 608
PstNI CAGNNNCTG 2 cut(s) 416, 743
PsuI RGATCY 3 cut(s) 74, 807, 946
PvuII CAGCTG 2 cut(s) 167, 271
RsaI GTAC 1 cut(s) 1250
RsaNI GTAC 1 cut(s) 1249
SaqAI TTAA 1 cut(s) 450
Sau3AI GATC 8 cut(s) 74, 418, 642, 775, 807, 946, 969, 1043
Sau96I GGNCC 1 cut(s) 98
SchI GAGTC 4 cut(s) 227, 284, 601, 680
ScrFI CCNGG 4 cut(s) 816, 876, 951, 1246
SduI GDGCHC 1 cut(s) 253
SfaNI GCATC 4 cut(s) 367, 508, 571, 1071
Sfr274I CTCGAG 1 cut(s) 608
SfuI TTCGAA 1 cut(s) 59
SinI GGWCC 1 cut(s) 98
SlaI CTCGAG 1 cut(s) 608
SmlI CTYRAG 4 cut(s) 608, 764, 791, 985
SmoI CTYRAG 4 cut(s) 608, 764, 791, 985
Sse9I AATT 7 cut(s) 39, 61, 160, 255, 438, 509, 1158
SseBI AGGCCT 2 cut(s) 55, 874
SspMI CTAG 2 cut(s) 246, 668
StuI AGGCCT 2 cut(s) 55, 874
StyD4I CCNGG 4 cut(s) 814, 874, 949, 1244
StyI CCWWGG 2 cut(s) 667, 1140
TaaI ACNGT 3 cut(s) 291, 839, 1129
TaqI TCGA 6 cut(s) 59, 354, 609, 689, 1008, 1046
TasI AATT 7 cut(s) 39, 61, 160, 255, 438, 509, 1158
TauI GCSGC 3 cut(s) 14, 17, 47
TfiI GAWTC 3 cut(s) 890, 1133, 1241
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TscAI CASTG 3 cut(s) 421, 844, 1084
TseFI GTSAC 1 cut(s) 1198
TseI GCWGC 8 cut(s) 8, 145, 346, 349, 554, 737, 902, 905
Tsp45I GTSAC 1 cut(s) 1198
TspDTI ATGAA 5 cut(s) 213, 474, 502, 818, 1161
TspGWI ACGGA 1 cut(s) 205
TspRI CASTG 3 cut(s) 421, 844, 1084
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 3 cut(s) 61, 160, 509
XcmI CCANNNNNNNNNTGG 1 cut(s) 529
XhoI CTCGAG 1 cut(s) 608
XmaJI CCTAGG 1 cut(s) 667
XspI CTAG 2 cut(s) 246, 668
Zsp2I ATGCAT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.