RLG00000005496

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004076
Physical Location & Seq
Forward (+)
68093158 .. 68094797
1640 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005496

Sequence Viewer

Length: 1287 bp
ATGGAAGCAGCAGCCACAGCGAGTGTGTTGTTCCAATCATCAATTGCGGCCTTTAGGCCTTCGAATTCTGTCGGAAGATCCGGTCTTTTGATGGCCAGCGGTCCCAAGTTTATGCCTCTGGGACATTTGGGTTCCAAATCTCACTCCTCAATCAAGCAGCATCAGTTTTCAAATTCAGCTGCAAGAATGGGTTTTGGAAGGAGGAGGTGCTTGGTGGTTAGGGCGGCATCAGCGTCGTCTTCATCTCCGGACTCTGCTGGTTCTAGTGCTCCAATTGCTCCACTTCAGCTGGAGTCGCCGATTGGACAGTTCCTATCTCAGATGATGATAAGCCACCCTCATCTTGTGCCTACCGCAGTTGAGCAGCAGCTCGAACAGCTCCAAACTGACCGCGATGCTGAGCAGAAGAAAGAAGAGGCCTCCGCTTCAGACACTGATCTTGTGTTATACAGGAGAATTGCGGAGGTTAAAGCTAATGAAAGGAAGAAAGCTCTTGAAGAGATATTATATGCGTTAGTGGTGCAGAAATTCATGGATGCCAATGTTTCTTTGGTGCCTTCCATTGCCCCTGCTGCTTCAGACCCTACTGGCCGAGTTGATGCATGGCCAAGTCAGGATGACAAGCTCGAGCGACTACATTCTCCTGAAGCCTACGAGATGATCCAGAACCACCTGTCTCTCATCCTAGGAAATCGGTTGGACGACTCGACCTCTTTAGCACAGATAAGCAAGCTCAGAGTGGGGCAGGTTTATGCAGCATCTGTAATGTATGGATACTTCCTCAAGCGGGTTGATCAGAGGTTTCAGCTTGAGAAGACAATGAAGGTCCTTCCAGGTTCGCTGGGTGGAGAAGACAGTGATATTCAAAAAGCCGTGGGAGAGGACAAGAGGCCTGGTGGTGTGGATGATTCTTTGCAAGCAGCAGCTTCCCATCCTGAAGTATCTTCTTGGTCTGGGGGCATGGGTCCTGGAGCTTTTGGTAATGTGATCAAACCTTCCCGCTTGAGAACCTATGTGATGTCTGTCGATGGAGAGACCCTTCAAAGATACGCAACAATCAGATCGAGAGAGGCTGTTAGCATCATTGAAAAGCACACTGAGGCGTTGTTTGGAAAACCTGATATTGTTATAACACCTCAGGGAACTGTTGATTCTTCCAATGATGAACACATCAAAATTAGCTTTGGTGGTTTGAAGAGACTTGTTTTGGAAGCTGTGACTTTCGGTTCTTTCCTCTGGGATGTTGAGAGCTATGTGGATTCCAGGTACCATTTTGTTACGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0006950 GO:0006979 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0010035 GO:0010193 GO:0010224 GO:0042221 GO:0042493 GO:0046677 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

429

Amino Acids

46.57

Weight (kDa)

6.43

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 149 - 274 5.3e-21 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1130
Acc36I ACCTGC 1 cut(s) 736
Acc65I GGTACC 1 cut(s) 1266
AccB1I GGYRCC 2 cut(s) 553, 1266
AccII CGCG 1 cut(s) 393
AccIII TCCGGA 1 cut(s) 247
AciI CCGC 9 cut(s) 47, 99, 224, 354, 391, 423, 461, 787, 1000
AclWI GGATC 2 cut(s) 72, 655
AcoI YGGCCR 3 cut(s) 93, 589, 605
AcsI RAATTY 3 cut(s) 64, 172, 527
AcuI CTGAAG 5 cut(s) 269, 411, 561, 666, 957
AfaI GTAC 1 cut(s) 1268
AfiI CCNNNNNNNGG 1 cut(s) 787
AgsI TTSAA 6 cut(s) 171, 497, 866, 1043, 1088, 1195
AjnI CCWGG 4 cut(s) 832, 892, 967, 1262
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 3 cut(s) 681, 1028, 1192
AlwI GGATC 2 cut(s) 72, 655
AlwNI CAGNNNCTG 2 cut(s) 434, 761
Ama87I CYCGRG 1 cut(s) 626
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 7 cut(s) 48, 56, 93, 417, 589, 605, 890
ApoI RAATTY 3 cut(s) 64, 172, 527
Asp718I GGTACC 1 cut(s) 1266
AspA2I CCTAGG 1 cut(s) 685
AspS9I GGNCC 3 cut(s) 101, 826, 965
AsuII TTCGAA 1 cut(s) 62
AvaI CYCGRG 1 cut(s) 626
AvaII GGWCC 3 cut(s) 101, 826, 965
AvrII CCTAGG 1 cut(s) 685
AxyI CCTNAGG 1 cut(s) 1137
BalI TGGCCA 2 cut(s) 95, 607
BanI GGYRCC 2 cut(s) 553, 1266
BarI GAAGNNNNNNTAC 2 cut(s) 761, 793
BbsI GAAGAC 3 cut(s) 231, 821, 858
Bbv12I GWGCWC 1 cut(s) 271
BccI CCATC 3 cut(s) 85, 939, 1022
BceAI ACGGC 1 cut(s) 857
BcgI CGANNNNNNTGC 2 cut(s) 216, 250
BciT130I CCWGG 4 cut(s) 834, 894, 969, 1264
BciVI GTATCC 1 cut(s) 767
BclI TGATCA 2 cut(s) 793, 987
BcoDI GTCTC 3 cut(s) 681, 1028, 1192
BfaI CTAG 2 cut(s) 264, 686
BfuAI ACCTGC 1 cut(s) 736
BfuI GTATCC 1 cut(s) 767
BlnI CCTAGG 1 cut(s) 685
BlpI GCTNAGC 1 cut(s) 399
Bme1390I CCNGG 4 cut(s) 834, 894, 969, 1264
Bme18I GGWCC 3 cut(s) 101, 826, 965
BmeT110I CYCGRG 1 cut(s) 626
BmgT120I GGNCC 3 cut(s) 101, 826, 965
BmiI GGNNCC 5 cut(s) 103, 133, 555, 966, 1268
BmrFI CCNGG 4 cut(s) 834, 894, 969, 1264
BmsI GCATC 7 cut(s) 169, 236, 385, 526, 589, 767, 1089
BpiI GAAGAC 3 cut(s) 231, 821, 858
BpmI CTGGAG 2 cut(s) 311, 990
Bpu1102I GCTNAGC 1 cut(s) 399
Bpu14I TTCGAA 1 cut(s) 62
BpuEI CTTGAG 3 cut(s) 767, 830, 1024
BsaI GGTCTC 1 cut(s) 1028
BsaJI CCNNGG 2 cut(s) 685, 873
BsaWI WCCGGW 2 cut(s) 80, 247
Bsc4I CCNNNNNNNGG 1 cut(s) 787
Bse1I ACTGG 1 cut(s) 592
Bse21I CCTNAGG 1 cut(s) 1137
Bse3DI GCAATG 1 cut(s) 561
BseAI TCCGGA 1 cut(s) 247
BseBI CCWGG 4 cut(s) 834, 894, 969, 1264
BseDI CCNNGG 2 cut(s) 685, 873
BseGI GGATG 6 cut(s) 541, 622, 681, 910, 931, 1246
BseLI CCNNNNNNNGG 1 cut(s) 787
BseMI GCAATG 1 cut(s) 561
BseMII CTCAG 5 cut(s) 332, 390, 748, 1089, 1151
BseNI ACTGG 1 cut(s) 592
BseRI GAGGAG 2 cut(s) 136, 217
BseYI CCCAGC 1 cut(s) 841
BsgI GTGCAG 1 cut(s) 542
Bsh1236I CGCG 1 cut(s) 393
BshFI GGCC 7 cut(s) 50, 58, 95, 419, 591, 607, 892
BshNI GGYRCC 2 cut(s) 553, 1266
BsiHKAI GWGCWC 1 cut(s) 271
BsiHKCI CYCGRG 1 cut(s) 626
BsiSI CCGG 2 cut(s) 81, 248
BslFI GGGAC 2 cut(s) 87, 135
BslI CCNNNNNNNGG 1 cut(s) 787
BsmAI GTCTC 3 cut(s) 681, 1028, 1192
BsmFI GGGAC 2 cut(s) 87, 135
BsnI GGCC 7 cut(s) 50, 58, 95, 419, 591, 607, 892
Bso31I GGTCTC 1 cut(s) 1028
BsoBI CYCGRG 1 cut(s) 626
Bsp119I TTCGAA 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 271
Bsp13I TCCGGA 1 cut(s) 247
Bsp143I GATC 6 cut(s) 77, 436, 660, 793, 987, 1061
Bsp1720I GCTNAGC 1 cut(s) 399
BspACI CCGC 9 cut(s) 47, 99, 224, 354, 391, 423, 461, 787, 1000
BspANI GGCC 7 cut(s) 50, 58, 95, 419, 591, 607, 892
BspCNI CTCAG 5 cut(s) 331, 391, 747, 1090, 1150
BspEI TCCGGA 1 cut(s) 247
BspFNI CGCG 1 cut(s) 393
BspLI GGNNCC 5 cut(s) 103, 133, 555, 966, 1268
BspMI ACCTGC 1 cut(s) 736
BspPI GGATC 2 cut(s) 72, 655
BspT104I TTCGAA 1 cut(s) 62
BspT107I GGYRCC 2 cut(s) 553, 1266
BspTNI GGTCTC 1 cut(s) 1028
BsrDI GCAATG 1 cut(s) 561
BsrI ACTGG 1 cut(s) 592
BssECI CCNNGG 2 cut(s) 685, 873
BssMI GATC 6 cut(s) 77, 436, 660, 793, 987, 1061
BssT1I CCWWGG 1 cut(s) 685
Bst2UI CCWGG 4 cut(s) 834, 894, 969, 1264
Bst4CI ACNGT 3 cut(s) 309, 857, 1147
Bst6I CTCTTC 3 cut(s) 408, 492, 1190
BstBI TTCGAA 1 cut(s) 62
BstC8I GCNNGC 3 cut(s) 97, 731, 918
BstDEI CTNAG 5 cut(s) 318, 399, 734, 1098, 1137
BstDSI CCRYGG 1 cut(s) 873
BstF5I GGATG 6 cut(s) 541, 622, 681, 910, 931, 1246
BstFNI CGCG 1 cut(s) 393
BstKTI GATC 6 cut(s) 80, 439, 663, 796, 990, 1064
BstMAI GTCTC 3 cut(s) 681, 1028, 1192
BstMBI GATC 6 cut(s) 77, 436, 660, 793, 987, 1061
BstMWI GCNNNNNNNGC 6 cut(s) 17, 230, 275, 295, 376, 572
BstNI CCWGG 4 cut(s) 834, 894, 969, 1264
BstSCI CCNGG 4 cut(s) 832, 892, 967, 1262
BstUI CGCG 1 cut(s) 393
BstV2I GAAGAC 3 cut(s) 231, 821, 858
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
Bsu36I CCTNAGG 1 cut(s) 1137
BsuI GTATCC 1 cut(s) 767
BsuRI GGCC 7 cut(s) 50, 58, 95, 419, 591, 607, 892
BtgI CCRYGG 1 cut(s) 873
BtgZI GCGATG 1 cut(s) 408
BtsCI GGATG 6 cut(s) 541, 622, 681, 910, 931, 1246
BtsIMutI CAGTG 3 cut(s) 432, 862, 1095
BveI ACCTGC 1 cut(s) 736
Cac8I GCNNGC 3 cut(s) 97, 731, 918
CaiI CAGNNNCTG 2 cut(s) 434, 761
Cfr13I GGNCC 3 cut(s) 101, 826, 965
CseI GACGC 1 cut(s) 222
Csp6I GTAC 1 cut(s) 1267
CviAII CATG 3 cut(s) 532, 603, 961
CviQI GTAC 1 cut(s) 1267
DdeI CTNAG 5 cut(s) 318, 399, 734, 1098, 1137
DpnI GATC 6 cut(s) 79, 438, 662, 795, 989, 1063
DpnII GATC 6 cut(s) 77, 436, 660, 793, 987, 1061
EaeI YGGCCR 3 cut(s) 93, 589, 605
Eam1104I CTCTTC 3 cut(s) 408, 492, 1190
EarI CTCTTC 3 cut(s) 408, 492, 1190
Eco130I CCWWGG 1 cut(s) 685
Eco147I AGGCCT 3 cut(s) 58, 419, 892
Eco31I GGTCTC 1 cut(s) 1028
Eco47I GGWCC 3 cut(s) 101, 826, 965
Eco57I CTGAAG 5 cut(s) 269, 411, 561, 666, 957
Eco81I CCTNAGG 1 cut(s) 1137
Eco88I CYCGRG 1 cut(s) 626
EcoO109I RGGNCCY 2 cut(s) 826, 965
EcoRI GAATTC 1 cut(s) 64
EcoRII CCWGG 4 cut(s) 832, 892, 967, 1262
EcoT14I CCWWGG 1 cut(s) 685
EcoT22I ATGCAT 1 cut(s) 604
ErhI CCWWGG 1 cut(s) 685
FaeI CATG 3 cut(s) 535, 606, 964
FaqI GGGAC 2 cut(s) 87, 135
FatI CATG 3 cut(s) 531, 602, 960
FauI CCCGC 2 cut(s) 780, 1007
FbaI TGATCA 2 cut(s) 793, 987
FokI GGATG 6 cut(s) 548, 629, 668, 917, 918, 1253
FspBI CTAG 2 cut(s) 264, 686
GsaI CCCAGC 1 cut(s) 845
GsuI CTGGAG 2 cut(s) 311, 990
HaeIII GGCC 7 cut(s) 50, 58, 95, 419, 591, 607, 892
HapII CCGG 2 cut(s) 81, 248
HgaI GACGC 1 cut(s) 222
Hin1II CATG 3 cut(s) 535, 606, 964
HinfI GANTC 6 cut(s) 251, 293, 704, 908, 1151, 1259
HpaII CCGG 2 cut(s) 81, 248
Hpy188I TCNGA 7 cut(s) 74, 321, 430, 580, 737, 798, 1061
Hpy188III TCNNGA 7 cut(s) 248, 494, 614, 644, 664, 935, 1065
Hpy99I CGWCG 1 cut(s) 238
HpyAV CCTTC 7 cut(s) 69, 192, 567, 817, 839, 1005, 1049
HpyCH4III ACNGT 3 cut(s) 309, 857, 1147
HpyCH4V TGCA 5 cut(s) 182, 523, 602, 755, 916
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 230, 275, 295, 376, 572
HpyF3I CTNAG 5 cut(s) 318, 399, 734, 1098, 1137
Hsp92II CATG 3 cut(s) 535, 606, 964
Kpn2I TCCGGA 1 cut(s) 247
KpnI GGTACC 1 cut(s) 1270
Ksp22I TGATCA 2 cut(s) 793, 987
Kzo9I GATC 6 cut(s) 77, 436, 660, 793, 987, 1061
LmnI GCTCC 4 cut(s) 274, 283, 384, 971
LweI GCATC 7 cut(s) 169, 236, 385, 526, 589, 767, 1089
MaeI CTAG 2 cut(s) 264, 686
MaeIII GTNAC 2 cut(s) 1216, 1276
MalI GATC 6 cut(s) 79, 438, 662, 795, 989, 1063
MboI GATC 6 cut(s) 77, 436, 660, 793, 987, 1061
MfeI CAATTG 2 cut(s) 42, 273
MflI RGATCY 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 271
MlsI TGGCCA 2 cut(s) 95, 607
MluCI AATT 7 cut(s) 42, 64, 172, 273, 456, 527, 1176
MluNI TGGCCA 2 cut(s) 95, 607
MlyI GAGTC 3 cut(s) 245, 302, 698
MmeI TCCRAC 2 cut(s) 52, 678
Mox20I TGGCCA 2 cut(s) 95, 607
Mph1103I ATGCAT 1 cut(s) 604
MroI TCCGGA 1 cut(s) 247
MscI TGGCCA 2 cut(s) 95, 607
MseI TTAA 1 cut(s) 468
Msp20I TGGCCA 2 cut(s) 95, 607
MspA1I CMGCKG 3 cut(s) 99, 179, 289
MspI CCGG 2 cut(s) 81, 248
MspR9I CCNGG 4 cut(s) 834, 894, 969, 1264
MunI CAATTG 2 cut(s) 42, 273
MvaI CCWGG 4 cut(s) 834, 894, 969, 1264
MvnI CGCG 1 cut(s) 393
MwoI GCNNNNNNNGC 6 cut(s) 17, 230, 275, 295, 376, 572
NdeII GATC 6 cut(s) 77, 436, 660, 793, 987, 1061
NlaIII CATG 3 cut(s) 535, 606, 964
NlaIV GGNNCC 5 cut(s) 103, 133, 555, 966, 1268
NmeAIII GCCGAG 1 cut(s) 617
NmuCI GTSAC 1 cut(s) 1216
NsiI ATGCAT 1 cut(s) 604
NspV TTCGAA 1 cut(s) 62
PaeR7I CTCGAG 1 cut(s) 626
PceI AGGCCT 3 cut(s) 58, 419, 892
PfeI GAWTC 3 cut(s) 908, 1151, 1259
PfoI TCCNGGA 1 cut(s) 967
PleI GAGTC 3 cut(s) 245, 301, 698
PpsI GAGTC 3 cut(s) 245, 301, 698
PpuMI RGGWCCY 2 cut(s) 826, 965
PsiI TTATAA 1 cut(s) 1130
Psp5II RGGWCCY 2 cut(s) 826, 965
Psp6I CCWGG 4 cut(s) 832, 892, 967, 1262
PspFI CCCAGC 1 cut(s) 841
PspGI CCWGG 4 cut(s) 832, 892, 967, 1262
PspN4I GGNNCC 5 cut(s) 103, 133, 555, 966, 1268
PspPI GGNCC 3 cut(s) 101, 826, 965
PspPPI RGGWCCY 2 cut(s) 826, 965
PspXI VCTCGAGB 1 cut(s) 626
PstNI CAGNNNCTG 2 cut(s) 434, 761
PsuI RGATCY 1 cut(s) 77
PvuII CAGCTG 2 cut(s) 179, 289
RsaI GTAC 1 cut(s) 1268
RsaNI GTAC 1 cut(s) 1267
SaqAI TTAA 1 cut(s) 468
Sau3AI GATC 6 cut(s) 77, 436, 660, 793, 987, 1061
Sau96I GGNCC 3 cut(s) 101, 826, 965
SchI GAGTC 3 cut(s) 245, 302, 698
ScrFI CCNGG 4 cut(s) 834, 894, 969, 1264
SduI GDGCHC 1 cut(s) 271
SfaNI GCATC 7 cut(s) 169, 236, 385, 526, 589, 767, 1089
Sfr274I CTCGAG 1 cut(s) 626
SfuI TTCGAA 1 cut(s) 62
SinI GGWCC 3 cut(s) 101, 826, 965
SlaI CTCGAG 1 cut(s) 626
SmlI CTYRAG 4 cut(s) 626, 782, 809, 1003
SmoI CTYRAG 4 cut(s) 626, 782, 809, 1003
Sse9I AATT 7 cut(s) 42, 64, 172, 273, 456, 527, 1176
SseBI AGGCCT 3 cut(s) 58, 419, 892
SsiI CCGC 9 cut(s) 47, 99, 224, 354, 391, 423, 461, 787, 1000
SspMI CTAG 2 cut(s) 264, 686
StuI AGGCCT 3 cut(s) 58, 419, 892
StyD4I CCNGG 4 cut(s) 832, 892, 967, 1262
StyI CCWWGG 1 cut(s) 685
TaaI ACNGT 3 cut(s) 309, 857, 1147
TaqI TCGA 6 cut(s) 62, 372, 627, 707, 1026, 1064
TasI AATT 7 cut(s) 42, 64, 172, 273, 456, 527, 1176
TauI GCSGC 2 cut(s) 50, 227
TfiI GAWTC 3 cut(s) 908, 1151, 1259
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TscAI CASTG 3 cut(s) 439, 862, 1102
TseFI GTSAC 1 cut(s) 1216
Tsp45I GTSAC 1 cut(s) 1216
TspDTI ATGAA 5 cut(s) 231, 492, 520, 836, 1179
TspRI CASTG 3 cut(s) 439, 862, 1102
VpaK11BI GGWCC 3 cut(s) 101, 826, 965
XapI RAATTY 3 cut(s) 64, 172, 527
XcmI CCANNNNNNNNNTGG 1 cut(s) 547
XhoI CTCGAG 1 cut(s) 626
XmaJI CCTAGG 1 cut(s) 685
XspI CTAG 2 cut(s) 264, 686
Zsp2I ATGCAT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.