Rroxscaffold_3G00275490

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004076
Physical Location & Seq
Forward (+)
66928139 .. 66930427
2289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00275490.1

Sequence Viewer

Length: 1314 bp
ATGGAAGCAGCAGCCACAGCGAGTGTGTTCCAATCATCAATTGCGGCCTTTAGGCCTTCGAATTCTGTCGGAAGATCCGTTCTTTTGATGGCCGGCGATCCCAAGTTTATGCCTTTGGGACATTTGGGTTCCAAATCTCACTCCTCAATCAAGCATCAGTTTTCAAATTCAACTGGAAGAATGGGTTTTGGAAGGAGGAGGTGCTTGGTAGTTAGGGCGGCATCAGCGTCGTCTTCATCTCCGGACTCTGCTGGTTCTAGTGCTCCAATTGCTCCACTTCAGCTGGAGTCGCCGATTGGACAGTTCCTATCTCAGATGATGATAAGCCACCCTCATCTTGTGCCTACCGCAGTTGAGCAGCAGCTCGAACAGCTCCAAACTGACCGCGATGCTGAGCAGAAGAAGGAAGAGGCTTCCGCTTCAGACACTGATCTTGTGTTATACAGGAGAATTGCGGAGGTTAAAGCTAATGAAAGGAAGAAAGCTCTTGAAGAGATATTATATGCGTTAGTGGTGCAGAAATTCATGGATGCCAATGTTTCTTTGGTGCCTTCCATTGCCCCTGCTGCTTCAGACCCTTCTGGCCGAGTTGATGCATGGCCGAGTCAGGATGATAAGCTCAAGCGACTACATTCTCCTGAAGCCTACGAGATGATCCAGAACCACCTGTCTCTCATCCTAGGAAATCGGTTGGACGACTCGACCTCTTTAGCACAGATAAGCAAGCTCAGAGTGGGGCAGGTTTATGCAGCATCTGTAATGTATGGATACTTCCTCAAGCGGGTTGATCAGAGGTTTCAGCTTGAGAAGACAATGAAGATCCTTCCAGGTTCGCTGGGTGGAGAAGACAGTGATATTCAAAAAGCCGTGGGAGAGGACAAGAGGCCTGGTGGTGTGGATGATTCTTTGCAAGCAGCAGCTTCCCATCCTGAAGTATCTTCTTGGTCTGGGGGGATGGGTCCTGGAGCTTTTGGTAATGTGATCAAACCTTCCCGCTTGAGAACCTATGTGATGTCTGTCGATGGAGAGACCCTTCAAAGATACGCAACAATCAGATCGAGAGAGGCTGTTAGCATCATAGAAAAGCACACTGAGGCATTGTTTGGAAAACCTGATATTGTTATAACACCTCAGGGAACTGTTGATTCTTCCAATGATGAACACATCAAAATTAGCTTTGGTGGTTTGAAGAGACTTGTTTTGGAAGCTGTGACTTTCGGTTCTTTCCTCTGGGATGTTGAGAGCTATGTGGATTCCAGGTCTCAGATGAATGTGCTAGTTCAGGACTTAATTACATTGGACCTCGACTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0006950 GO:0006979 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0010035 GO:0010193 GO:0010224 GO:0042221 GO:0042493 GO:0046677 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

437

Amino Acids

47.59

Weight (kDa)

6.1

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 147 - 272 1.2e-20 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1124
Acc36I ACCTGC 1 cut(s) 730
AccB1I GGYRCC 1 cut(s) 547
AccII CGCG 1 cut(s) 387
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 8 cut(s) 44, 218, 348, 385, 417, 455, 781, 994
AclWI GGATC 4 cut(s) 69, 92, 649, 814
AcoI YGGCCR 3 cut(s) 90, 583, 599
AcsI RAATTY 3 cut(s) 61, 166, 521
AcuI CTGAAG 5 cut(s) 263, 405, 555, 660, 951
AfiI CCNNNNNNNGG 1 cut(s) 781
AgsI TTSAA 6 cut(s) 165, 171, 491, 860, 1037, 1189
AjnI CCWGG 4 cut(s) 826, 886, 961, 1256
AloI GAACNNNNNNTCC 2 cut(s) 63, 95
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 4 cut(s) 675, 1022, 1186, 1266
AlwI GGATC 4 cut(s) 69, 92, 649, 814
AlwNI CAGNNNCTG 2 cut(s) 428, 755
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 6 cut(s) 45, 53, 90, 583, 599, 884
ApeKI GCWGC 8 cut(s) 8, 11, 358, 361, 566, 749, 914, 917
ApoI RAATTY 3 cut(s) 61, 166, 521
AspA2I CCTAGG 1 cut(s) 679
AspS9I GGNCC 2 cut(s) 959, 1300
AsuII TTCGAA 1 cut(s) 59
AvaII GGWCC 2 cut(s) 959, 1300
AvrII CCTAGG 1 cut(s) 679
AxyI CCTNAGG 1 cut(s) 1131
BanI GGYRCC 1 cut(s) 547
BarI GAAGNNNNNNTAC 2 cut(s) 755, 787
BbsI GAAGAC 3 cut(s) 225, 815, 852
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 8 cut(s) 20, 23, 370, 373, 553, 761, 926, 929
BccI CCATC 4 cut(s) 82, 933, 949, 1016
BceAI ACGGC 1 cut(s) 851
BcgI CGANNNNNNTGC 2 cut(s) 210, 244
BciT130I CCWGG 4 cut(s) 828, 888, 963, 1258
BciVI GTATCC 1 cut(s) 761
BclI TGATCA 2 cut(s) 787, 981
BcoDI GTCTC 4 cut(s) 675, 1022, 1186, 1266
BfaI CTAG 3 cut(s) 258, 680, 1277
BfuAI ACCTGC 1 cut(s) 730
BfuI GTATCC 1 cut(s) 761
BlnI CCTAGG 1 cut(s) 679
BlpI GCTNAGC 1 cut(s) 393
Bme1390I CCNGG 4 cut(s) 828, 888, 963, 1258
Bme18I GGWCC 2 cut(s) 959, 1300
BmgT120I GGNCC 2 cut(s) 959, 1300
BmiI GGNNCC 3 cut(s) 130, 549, 960
BmrFI CCNGG 4 cut(s) 828, 888, 963, 1258
BmsI GCATC 7 cut(s) 163, 230, 379, 520, 583, 761, 1083
BpiI GAAGAC 3 cut(s) 225, 815, 852
BpmI CTGGAG 2 cut(s) 305, 984
Bpu1102I GCTNAGC 1 cut(s) 393
Bpu14I TTCGAA 1 cut(s) 59
BpuEI CTTGAG 4 cut(s) 605, 761, 824, 1018
BsaI GGTCTC 2 cut(s) 1022, 1266
BsaJI CCNNGG 2 cut(s) 679, 867
BsaWI WCCGGW 1 cut(s) 241
Bsc4I CCNNNNNNNGG 1 cut(s) 781
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 178
Bse21I CCTNAGG 1 cut(s) 1131
Bse3DI GCAATG 1 cut(s) 555
BseAI TCCGGA 1 cut(s) 241
BseBI CCWGG 4 cut(s) 828, 888, 963, 1258
BseDI CCNNGG 2 cut(s) 679, 867
BseGI GGATG 7 cut(s) 535, 616, 675, 904, 925, 960, 1240
BseLI CCNNNNNNNGG 1 cut(s) 781
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 6 cut(s) 326, 384, 742, 1083, 1145, 1277
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 2 cut(s) 133, 211
BseXI GCAGC 8 cut(s) 20, 23, 370, 373, 553, 761, 926, 929
BseYI CCCAGC 1 cut(s) 835
BsgI GTGCAG 1 cut(s) 536
Bsh1236I CGCG 1 cut(s) 387
BshFI GGCC 6 cut(s) 47, 55, 92, 585, 601, 886
BshNI GGYRCC 1 cut(s) 547
BsiHKAI GWGCWC 1 cut(s) 265
BsiSI CCGG 2 cut(s) 93, 242
BslFI GGGAC 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 781
BsmAI GTCTC 4 cut(s) 675, 1022, 1186, 1266
BsmFI GGGAC 1 cut(s) 132
BsnI GGCC 6 cut(s) 47, 55, 92, 585, 601, 886
Bso31I GGTCTC 2 cut(s) 1022, 1266
Bsp119I TTCGAA 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 265
Bsp13I TCCGGA 1 cut(s) 241
Bsp143I GATC 8 cut(s) 74, 97, 430, 654, 787, 819, 981, 1055
Bsp1720I GCTNAGC 1 cut(s) 393
BspACI CCGC 8 cut(s) 44, 218, 348, 385, 417, 455, 781, 994
BspANI GGCC 6 cut(s) 47, 55, 92, 585, 601, 886
BspCNI CTCAG 6 cut(s) 325, 385, 741, 1084, 1144, 1276
BspEI TCCGGA 1 cut(s) 241
BspFNI CGCG 1 cut(s) 387
BspLI GGNNCC 3 cut(s) 130, 549, 960
BspMI ACCTGC 1 cut(s) 730
BspPI GGATC 4 cut(s) 69, 92, 649, 814
BspT104I TTCGAA 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 547
BspTNI GGTCTC 2 cut(s) 1022, 1266
BsrDI GCAATG 1 cut(s) 555
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 1 cut(s) 178
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 2 cut(s) 679, 867
BssMI GATC 8 cut(s) 74, 97, 430, 654, 787, 819, 981, 1055
BssT1I CCWWGG 1 cut(s) 679
Bst2UI CCWGG 4 cut(s) 828, 888, 963, 1258
Bst4CI ACNGT 3 cut(s) 303, 851, 1141
Bst6I CTCTTC 3 cut(s) 402, 486, 1184
BstBI TTCGAA 1 cut(s) 59
BstC8I GCNNGC 3 cut(s) 94, 725, 912
BstDEI CTNAG 6 cut(s) 312, 393, 728, 1092, 1131, 1263
BstDSI CCRYGG 1 cut(s) 867
BstF5I GGATG 7 cut(s) 535, 616, 675, 904, 925, 960, 1240
BstFNI CGCG 1 cut(s) 387
BstKTI GATC 8 cut(s) 77, 100, 433, 657, 790, 822, 984, 1058
BstMAI GTCTC 4 cut(s) 675, 1022, 1186, 1266
BstMBI GATC 8 cut(s) 74, 97, 430, 654, 787, 819, 981, 1055
BstMWI GCNNNNNNNGC 6 cut(s) 17, 224, 269, 289, 370, 566
BstNI CCWGG 4 cut(s) 828, 888, 963, 1258
BstSCI CCNGG 4 cut(s) 826, 886, 961, 1256
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 8 cut(s) 20, 23, 370, 373, 553, 761, 926, 929
BstV2I GAAGAC 3 cut(s) 225, 815, 852
BstX2I RGATCY 2 cut(s) 74, 819
BstYI RGATCY 2 cut(s) 74, 819
Bsu36I CCTNAGG 1 cut(s) 1131
BsuI GTATCC 1 cut(s) 761
BsuRI GGCC 6 cut(s) 47, 55, 92, 585, 601, 886
BtgI CCRYGG 1 cut(s) 867
BtgZI GCGATG 1 cut(s) 402
BtsCI GGATG 7 cut(s) 535, 616, 675, 904, 925, 960, 1240
BtsIMutI CAGTG 3 cut(s) 426, 856, 1089
BveI ACCTGC 1 cut(s) 730
Cac8I GCNNGC 3 cut(s) 94, 725, 912
CaiI CAGNNNCTG 2 cut(s) 428, 755
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 2 cut(s) 959, 1300
CseI GACGC 1 cut(s) 216
CviAII CATG 2 cut(s) 526, 597
DdeI CTNAG 6 cut(s) 312, 393, 728, 1092, 1131, 1263
DpnI GATC 8 cut(s) 76, 99, 432, 656, 789, 821, 983, 1057
DpnII GATC 8 cut(s) 74, 97, 430, 654, 787, 819, 981, 1055
EaeI YGGCCR 3 cut(s) 90, 583, 599
Eam1104I CTCTTC 3 cut(s) 402, 486, 1184
EarI CTCTTC 3 cut(s) 402, 486, 1184
Eco130I CCWWGG 1 cut(s) 679
Eco147I AGGCCT 2 cut(s) 55, 886
Eco31I GGTCTC 2 cut(s) 1022, 1266
Eco47I GGWCC 2 cut(s) 959, 1300
Eco57I CTGAAG 5 cut(s) 263, 405, 555, 660, 951
Eco81I CCTNAGG 1 cut(s) 1131
EcoO109I RGGNCCY 1 cut(s) 959
EcoRI GAATTC 1 cut(s) 61
EcoRII CCWGG 4 cut(s) 826, 886, 961, 1256
EcoT14I CCWWGG 1 cut(s) 679
EcoT22I ATGCAT 1 cut(s) 598
ErhI CCWWGG 1 cut(s) 679
FaeI CATG 2 cut(s) 529, 600
FaqI GGGAC 1 cut(s) 132
FatI CATG 2 cut(s) 525, 596
FauI CCCGC 2 cut(s) 774, 1001
FbaI TGATCA 2 cut(s) 787, 981
FokI GGATG 7 cut(s) 542, 623, 662, 911, 912, 967, 1247
FspBI CTAG 3 cut(s) 258, 680, 1277
GsaI CCCAGC 1 cut(s) 839
GsuI CTGGAG 2 cut(s) 305, 984
HaeIII GGCC 6 cut(s) 47, 55, 92, 585, 601, 886
HapII CCGG 2 cut(s) 93, 242
HgaI GACGC 1 cut(s) 216
Hin1II CATG 2 cut(s) 529, 600
HinfI GANTC 7 cut(s) 245, 287, 604, 698, 902, 1145, 1253
HpaII CCGG 2 cut(s) 93, 242
Hpy188I TCNGA 8 cut(s) 71, 315, 424, 574, 731, 792, 1055, 1266
Hpy188III TCNNGA 8 cut(s) 242, 488, 608, 638, 658, 929, 1059, 1283
Hpy99I CGWCG 1 cut(s) 232
HpyAV CCTTC 8 cut(s) 66, 186, 397, 561, 588, 833, 999, 1043
HpyCH4III ACNGT 3 cut(s) 303, 851, 1141
HpyCH4V TGCA 4 cut(s) 517, 596, 749, 910
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 224, 269, 289, 370, 566
HpyF3I CTNAG 6 cut(s) 312, 393, 728, 1092, 1131, 1263
Hsp92II CATG 2 cut(s) 529, 600
Kpn2I TCCGGA 1 cut(s) 241
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Ksp22I TGATCA 2 cut(s) 787, 981
Kzo9I GATC 8 cut(s) 74, 97, 430, 654, 787, 819, 981, 1055
LmnI GCTCC 4 cut(s) 268, 277, 378, 965
Lsp1109I GCAGC 8 cut(s) 20, 23, 370, 373, 553, 761, 926, 929
LweI GCATC 7 cut(s) 163, 230, 379, 520, 583, 761, 1083
MaeI CTAG 3 cut(s) 258, 680, 1277
MaeIII GTNAC 1 cut(s) 1210
MalI GATC 8 cut(s) 76, 99, 432, 656, 789, 821, 983, 1057
MboI GATC 8 cut(s) 74, 97, 430, 654, 787, 819, 981, 1055
MfeI CAATTG 2 cut(s) 39, 267
MflI RGATCY 2 cut(s) 74, 819
MhlI GDGCHC 1 cut(s) 265
MluCI AATT 8 cut(s) 39, 61, 166, 267, 450, 521, 1170, 1290
MlyI GAGTC 4 cut(s) 239, 296, 613, 692
MmeI TCCRAC 2 cut(s) 49, 672
Mph1103I ATGCAT 1 cut(s) 598
MroI TCCGGA 1 cut(s) 241
MroNI GCCGGC 1 cut(s) 92
MseI TTAA 3 cut(s) 462, 1289, 1312
MspA1I CMGCKG 1 cut(s) 283
MspI CCGG 2 cut(s) 93, 242
MspR9I CCNGG 4 cut(s) 828, 888, 963, 1258
MunI CAATTG 2 cut(s) 39, 267
MvaI CCWGG 4 cut(s) 828, 888, 963, 1258
MvnI CGCG 1 cut(s) 387
MwoI GCNNNNNNNGC 6 cut(s) 17, 224, 269, 289, 370, 566
NaeI GCCGGC 1 cut(s) 94
NdeII GATC 8 cut(s) 74, 97, 430, 654, 787, 819, 981, 1055
NgoMIV GCCGGC 1 cut(s) 92
NlaIII CATG 2 cut(s) 529, 600
NlaIV GGNNCC 3 cut(s) 130, 549, 960
NmeAIII GCCGAG 2 cut(s) 611, 627
NmuCI GTSAC 1 cut(s) 1210
NsiI ATGCAT 1 cut(s) 598
NspV TTCGAA 1 cut(s) 59
PceI AGGCCT 2 cut(s) 55, 886
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PdiI GCCGGC 1 cut(s) 94
PfeI GAWTC 3 cut(s) 902, 1145, 1253
PfoI TCCNGGA 1 cut(s) 961
PleI GAGTC 4 cut(s) 239, 295, 612, 692
PpsI GAGTC 4 cut(s) 239, 295, 612, 692
PpuMI RGGWCCY 1 cut(s) 959
PsiI TTATAA 1 cut(s) 1124
Psp5II RGGWCCY 1 cut(s) 959
Psp6I CCWGG 4 cut(s) 826, 886, 961, 1256
PspFI CCCAGC 1 cut(s) 835
PspGI CCWGG 4 cut(s) 826, 886, 961, 1256
PspN4I GGNNCC 3 cut(s) 130, 549, 960
PspPI GGNCC 2 cut(s) 959, 1300
PspPPI RGGWCCY 1 cut(s) 959
PstNI CAGNNNCTG 2 cut(s) 428, 755
PsuI RGATCY 2 cut(s) 74, 819
PvuII CAGCTG 1 cut(s) 283
SaqAI TTAA 3 cut(s) 462, 1289, 1312
Sau3AI GATC 8 cut(s) 74, 97, 430, 654, 787, 819, 981, 1055
Sau96I GGNCC 2 cut(s) 959, 1300
SchI GAGTC 4 cut(s) 239, 296, 613, 692
ScrFI CCNGG 4 cut(s) 828, 888, 963, 1258
SduI GDGCHC 1 cut(s) 265
SfaNI GCATC 7 cut(s) 163, 230, 379, 520, 583, 761, 1083
SfuI TTCGAA 1 cut(s) 59
SinI GGWCC 2 cut(s) 959, 1300
SmlI CTYRAG 4 cut(s) 620, 776, 803, 997
SmoI CTYRAG 4 cut(s) 620, 776, 803, 997
Sse9I AATT 8 cut(s) 39, 61, 166, 267, 450, 521, 1170, 1290
SseBI AGGCCT 2 cut(s) 55, 886
SsiI CCGC 8 cut(s) 44, 218, 348, 385, 417, 455, 781, 994
SspMI CTAG 3 cut(s) 258, 680, 1277
StuI AGGCCT 2 cut(s) 55, 886
StyD4I CCNGG 4 cut(s) 826, 886, 961, 1256
StyI CCWWGG 1 cut(s) 679
TaaI ACNGT 3 cut(s) 303, 851, 1141
TaqI TCGA 6 cut(s) 59, 366, 701, 1020, 1058, 1305
TasI AATT 8 cut(s) 39, 61, 166, 267, 450, 521, 1170, 1290
TauI GCSGC 2 cut(s) 47, 221
TfiI GAWTC 3 cut(s) 902, 1145, 1253
Tru1I TTAA 3 cut(s) 462, 1289, 1312
Tru9I TTAA 3 cut(s) 462, 1289, 1312
TscAI CASTG 3 cut(s) 433, 856, 1096
TseFI GTSAC 1 cut(s) 1210
TseI GCWGC 8 cut(s) 8, 11, 358, 361, 566, 749, 914, 917
Tsp45I GTSAC 1 cut(s) 1210
TspDTI ATGAA 6 cut(s) 225, 486, 514, 830, 1173, 1283
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 3 cut(s) 433, 856, 1096
VpaK11BI GGWCC 2 cut(s) 959, 1300
XapI RAATTY 3 cut(s) 61, 166, 521
XcmI CCANNNNNNNNNTGG 1 cut(s) 541
XmaJI CCTAGG 1 cut(s) 679
XspI CTAG 3 cut(s) 258, 680, 1277
Zsp2I ATGCAT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.