RchiOBHm_Chr7g0177861

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
670338 .. 672342
2005 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15847

Sequence Viewer

Length: 1266 bp
ATGGAAGCAGCCGCCACAGCGAGTGTGTTCCAATCATCAATTGCGGCCTTTAGGCCTTCGAATTCTGTCGGAAGATCCCGTCTTTTGATGGCCAGCGGTCCCAAGTTTATGCCTTTGGGACATTTGGGTTCCAAATCTCACTCCTCAATCAAGCATCAGTTTTCAAATTCAGCTGGAAGAATAATACGGAGGAGGTCCTTGGTAGTTAGGGCGTCGTCTTCATCTCCGGACTCTGCTGGTTCTAGTGCTCCAATTGCTCCACTTCAGCTGGAGTCGCCGATTGGACAGTTCCTATCTCAGATGATGATAAGCCACCCTCACCTTGTGCCTACCGCAGTTGAGCAGCAGCTCGAACAGCTCCAAACTGACCGCGATGCTGAGCAGAAGAAGGAAGAGGCTTCCGCTTCAGACACTGATCTTGTGTTATACAGGAGAATTGCGGAGGTTAAAGCTAATGAAAGGAAGAAGGCTCTTGAAGAGATATTATATGCGTTAGTGGTGCAGAAATTCATGGATGCCAATGTTTCTTTGGTGCCTTCCATTGCCCCTGCTGCTTCAGACCCTTCTGGCCGAGTTGATGCATGGCCGAGTCAGGATGACAAGCTCGAGCGACTACATTCTCCTGAAGCCTACGAGATGATCCAGAACCACCTGTCTCTCATCCTAGGAAATCGGTTGGACGACTCGACCTCTTTAGCACAGATAAGCAAGCTCAGAGTGGGGCAGGTTTATGCAGCATCTGTAATGTATGGATACTTCCTCAAGCGGGTTGATCAGAGGTTTCAGCTTGAGAAGACAATGAAGATCCTTCCAGGTTCACTGGGTGGAGAAGACAGTGATATTCAAAAAGCCGTGGGAGAGGACAAGAGGCCTGGTGCTGTGGATGATTCTTTGCAAGCAGCAGCTTCCCATCCTGAAGTATCTTCTTGGTCTGGGGGCATGGGTCCTGGACCTTTTGGTAACATGATCAAACCTTCCCGCTTGAGAACCTATGTGATGTCTGTCGATGGAGAGACCCTTCAAAGATACGCAACAATCAGATCGAGAGAGGCTGTTAGCATCATTGAAAAGCACACTGAGGCGTTGTTTGGAAAACCTGATATTGTTATAACACCTCAGGGAACTGTTGATTCTTCCAATGATGAACACATCAAAATTAGCTTTGGTGGTTTGAAGAGACTTGTTTTGGAAGCTGTAACTTTCGGTTCTTTCCTCTGGGATGTTGAGAGCTATGTGGATTCCAGGTACCATTTTGTTACGAACTGA
Functional Annotation

Protein Analysis

421

Amino Acids

46.07

Weight (kDa)

6.62

Isoelectric Point (pI)

50.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 142 - 267 5.1e-21 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1109
Acc36I ACCTGC 1 cut(s) 715
Acc65I GGTACC 1 cut(s) 1245
AccB1I GGYRCC 2 cut(s) 532, 1245
AccII CGCG 1 cut(s) 372
AccIII TCCGGA 1 cut(s) 226
AciI CCGC 9 cut(s) 12, 44, 96, 333, 370, 402, 440, 766, 979
AclWI GGATC 3 cut(s) 69, 634, 799
AcoI YGGCCR 3 cut(s) 90, 568, 584
AcsI RAATTY 3 cut(s) 61, 166, 506
AcuI CTGAAG 5 cut(s) 248, 390, 540, 645, 936
AcyI GRCGYC 1 cut(s) 212
AdeI CACNNNGTG 2 cut(s) 325, 824
AfaI GTAC 1 cut(s) 1247
AfiI CCNNNNNNNGG 1 cut(s) 766
AgsI TTSAA 6 cut(s) 165, 476, 845, 1022, 1067, 1174
AjnI CCWGG 4 cut(s) 811, 871, 946, 1241
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 3 cut(s) 660, 1007, 1171
AlwI GGATC 3 cut(s) 69, 634, 799
AlwNI CAGNNNCTG 2 cut(s) 413, 740
Ama87I CYCGRG 1 cut(s) 605
Aor13HI TCCGGA 1 cut(s) 226
AoxI GGCC 6 cut(s) 45, 53, 90, 568, 584, 869
ApeKI GCWGC 7 cut(s) 8, 343, 346, 551, 734, 899, 902
ApoI RAATTY 3 cut(s) 61, 166, 506
Asp718I GGTACC 1 cut(s) 1245
AspA2I CCTAGG 1 cut(s) 664
AspS9I GGNCC 4 cut(s) 98, 195, 944, 950
AsuHPI GGTGA 1 cut(s) 311
AsuII TTCGAA 1 cut(s) 59
AvaI CYCGRG 1 cut(s) 605
AvaII GGWCC 4 cut(s) 98, 195, 944, 950
AvrII CCTAGG 1 cut(s) 664
AxyI CCTNAGG 1 cut(s) 1116
BalI TGGCCA 1 cut(s) 92
BanI GGYRCC 2 cut(s) 532, 1245
BarI GAAGNNNNNNTAC 2 cut(s) 740, 772
BbsI GAAGAC 3 cut(s) 210, 800, 837
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 7 cut(s) 20, 355, 358, 538, 746, 911, 914
BccI CCATC 3 cut(s) 82, 918, 1001
BceAI ACGGC 1 cut(s) 836
BciT130I CCWGG 4 cut(s) 813, 873, 948, 1243
BciVI GTATCC 1 cut(s) 746
BclI TGATCA 2 cut(s) 772, 966
BcoDI GTCTC 3 cut(s) 660, 1007, 1171
BfaI CTAG 2 cut(s) 243, 665
BfuAI ACCTGC 1 cut(s) 715
BfuI GTATCC 1 cut(s) 746
BisI GCNGC 9 cut(s) 9, 12, 45, 344, 347, 552, 735, 900, 903
BlnI CCTAGG 1 cut(s) 664
BlpI GCTNAGC 1 cut(s) 378
BlsI GCNGC 9 cut(s) 10, 13, 46, 345, 348, 553, 736, 901, 904
Bme1390I CCNGG 4 cut(s) 813, 873, 948, 1243
Bme18I GGWCC 4 cut(s) 98, 195, 944, 950
BmeT110I CYCGRG 1 cut(s) 605
BmgT120I GGNCC 4 cut(s) 98, 195, 944, 950
BmiI GGNNCC 5 cut(s) 100, 130, 534, 945, 1247
BmrFI CCNGG 4 cut(s) 813, 873, 948, 1243
BmrI ACTGGG 1 cut(s) 830
BmsI GCATC 6 cut(s) 163, 364, 505, 568, 746, 1068
BmuI ACTGGG 1 cut(s) 830
BpiI GAAGAC 3 cut(s) 210, 800, 837
BpmI CTGGAG 1 cut(s) 290
Bpu1102I GCTNAGC 1 cut(s) 378
Bpu14I TTCGAA 1 cut(s) 59
BpuEI CTTGAG 3 cut(s) 746, 809, 1003
BsaHI GRCGYC 1 cut(s) 212
BsaI GGTCTC 1 cut(s) 1007
BsaJI CCNNGG 3 cut(s) 198, 664, 852
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 1 cut(s) 766
Bse1I ACTGG 1 cut(s) 825
Bse21I CCTNAGG 1 cut(s) 1116
Bse3DI GCAATG 1 cut(s) 540
BseAI TCCGGA 1 cut(s) 226
BseBI CCWGG 4 cut(s) 813, 873, 948, 1243
BseDI CCNNGG 3 cut(s) 198, 664, 852
BseGI GGATG 6 cut(s) 520, 601, 660, 889, 910, 1225
BseLI CCNNNNNNNGG 1 cut(s) 766
BseMI GCAATG 1 cut(s) 540
BseMII CTCAG 5 cut(s) 311, 369, 727, 1068, 1130
BseNI ACTGG 1 cut(s) 825
BseRI GAGGAG 2 cut(s) 133, 205
BseXI GCAGC 7 cut(s) 20, 355, 358, 538, 746, 911, 914
BsgI GTGCAG 1 cut(s) 521
Bsh1236I CGCG 1 cut(s) 372
BshFI GGCC 6 cut(s) 47, 55, 92, 570, 586, 871
BshNI GGYRCC 2 cut(s) 532, 1245
BsiHKAI GWGCWC 1 cut(s) 250
BsiHKCI CYCGRG 1 cut(s) 605
BsiSI CCGG 1 cut(s) 227
BslFI GGGAC 2 cut(s) 84, 132
BslI CCNNNNNNNGG 1 cut(s) 766
BsmAI GTCTC 3 cut(s) 660, 1007, 1171
BsmFI GGGAC 2 cut(s) 84, 132
BsnI GGCC 6 cut(s) 47, 55, 92, 570, 586, 871
Bso31I GGTCTC 1 cut(s) 1007
BsoBI CYCGRG 1 cut(s) 605
Bsp119I TTCGAA 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 250
Bsp13I TCCGGA 1 cut(s) 226
Bsp143I GATC 7 cut(s) 74, 415, 639, 772, 804, 966, 1040
Bsp1720I GCTNAGC 1 cut(s) 378
BspACI CCGC 9 cut(s) 12, 44, 96, 333, 370, 402, 440, 766, 979
BspANI GGCC 6 cut(s) 47, 55, 92, 570, 586, 871
BspCNI CTCAG 5 cut(s) 310, 370, 726, 1069, 1129
BspEI TCCGGA 1 cut(s) 226
BspFNI CGCG 1 cut(s) 372
BspLI GGNNCC 5 cut(s) 100, 130, 534, 945, 1247
BspMI ACCTGC 1 cut(s) 715
BspPI GGATC 3 cut(s) 69, 634, 799
BspT104I TTCGAA 1 cut(s) 59
BspT107I GGYRCC 2 cut(s) 532, 1245
BspTNI GGTCTC 1 cut(s) 1007
BsrDI GCAATG 1 cut(s) 540
BsrI ACTGG 1 cut(s) 825
BssECI CCNNGG 3 cut(s) 198, 664, 852
BssMI GATC 7 cut(s) 74, 415, 639, 772, 804, 966, 1040
BssNI GRCGYC 1 cut(s) 212
BssT1I CCWWGG 2 cut(s) 198, 664
Bst2UI CCWGG 4 cut(s) 813, 873, 948, 1243
Bst4CI ACNGT 3 cut(s) 288, 836, 1126
Bst6I CTCTTC 3 cut(s) 387, 471, 1169
BstACI GRCGYC 1 cut(s) 212
BstBI TTCGAA 1 cut(s) 59
BstC8I GCNNGC 3 cut(s) 94, 710, 897
BstDEI CTNAG 5 cut(s) 297, 378, 713, 1077, 1116
BstDSI CCRYGG 1 cut(s) 852
BstF5I GGATG 6 cut(s) 520, 601, 660, 889, 910, 1225
BstFNI CGCG 1 cut(s) 372
BstKTI GATC 7 cut(s) 77, 418, 642, 775, 807, 969, 1043
BstMAI GTCTC 3 cut(s) 660, 1007, 1171
BstMBI GATC 7 cut(s) 74, 415, 639, 772, 804, 966, 1040
BstMWI GCNNNNNNNGC 5 cut(s) 17, 254, 274, 355, 551
BstNI CCWGG 4 cut(s) 813, 873, 948, 1243
BstSCI CCNGG 4 cut(s) 811, 871, 946, 1241
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 7 cut(s) 20, 355, 358, 538, 746, 911, 914
BstV2I GAAGAC 3 cut(s) 210, 800, 837
BstX2I RGATCY 2 cut(s) 74, 804
BstYI RGATCY 2 cut(s) 74, 804
Bsu36I CCTNAGG 1 cut(s) 1116
BsuI GTATCC 1 cut(s) 746
BsuRI GGCC 6 cut(s) 47, 55, 92, 570, 586, 871
BtgI CCRYGG 1 cut(s) 852
BtgZI GCGATG 1 cut(s) 387
BtsCI GGATG 6 cut(s) 520, 601, 660, 889, 910, 1225
BtsIMutI CAGTG 4 cut(s) 411, 818, 841, 1074
BveI ACCTGC 1 cut(s) 715
Cac8I GCNNGC 3 cut(s) 94, 710, 897
CaiI CAGNNNCTG 2 cut(s) 413, 740
Cfr13I GGNCC 4 cut(s) 98, 195, 944, 950
CseI GACGC 1 cut(s) 201
Csp6I GTAC 1 cut(s) 1246
CviAII CATG 4 cut(s) 511, 582, 940, 964
CviQI GTAC 1 cut(s) 1246
DdeI CTNAG 5 cut(s) 297, 378, 713, 1077, 1116
DpnI GATC 7 cut(s) 76, 417, 641, 774, 806, 968, 1042
DpnII GATC 7 cut(s) 74, 415, 639, 772, 804, 966, 1040
DraIII CACNNNGTG 2 cut(s) 325, 824
EaeI YGGCCR 3 cut(s) 90, 568, 584
Eam1104I CTCTTC 3 cut(s) 387, 471, 1169
EarI CTCTTC 3 cut(s) 387, 471, 1169
Eco130I CCWWGG 2 cut(s) 198, 664
Eco147I AGGCCT 2 cut(s) 55, 871
Eco31I GGTCTC 1 cut(s) 1007
Eco47I GGWCC 4 cut(s) 98, 195, 944, 950
Eco57I CTGAAG 5 cut(s) 248, 390, 540, 645, 936
Eco81I CCTNAGG 1 cut(s) 1116
Eco88I CYCGRG 1 cut(s) 605
EcoO109I RGGNCCY 2 cut(s) 195, 944
EcoRI GAATTC 1 cut(s) 61
EcoRII CCWGG 4 cut(s) 811, 871, 946, 1241
EcoT14I CCWWGG 2 cut(s) 198, 664
EcoT22I ATGCAT 1 cut(s) 583
ErhI CCWWGG 2 cut(s) 198, 664
FaeI CATG 4 cut(s) 514, 585, 943, 967
FaqI GGGAC 2 cut(s) 84, 132
FatI CATG 4 cut(s) 510, 581, 939, 963
FauI CCCGC 2 cut(s) 759, 986
FbaI TGATCA 2 cut(s) 772, 966
Fnu4HI GCNGC 9 cut(s) 9, 12, 45, 344, 347, 552, 735, 900, 903
FokI GGATG 6 cut(s) 527, 608, 647, 896, 897, 1232
Fsp4HI GCNGC 9 cut(s) 9, 12, 45, 344, 347, 552, 735, 900, 903
FspBI CTAG 2 cut(s) 243, 665
GluI GCNGC 9 cut(s) 9, 12, 45, 344, 347, 552, 735, 900, 903
GsuI CTGGAG 1 cut(s) 290
HaeIII GGCC 6 cut(s) 47, 55, 92, 570, 586, 871
HapII CCGG 1 cut(s) 227
HgaI GACGC 1 cut(s) 201
Hin1I GRCGYC 1 cut(s) 212
Hin1II CATG 4 cut(s) 514, 585, 943, 967
HinfI GANTC 7 cut(s) 230, 272, 589, 683, 887, 1130, 1238
HpaII CCGG 1 cut(s) 227
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 1 cut(s) 818
Hpy188I TCNGA 7 cut(s) 71, 300, 409, 559, 716, 777, 1040
Hpy188III TCNNGA 7 cut(s) 227, 473, 593, 623, 643, 914, 1044
Hpy8I GTNNAC 1 cut(s) 818
Hpy99I CGWCG 1 cut(s) 217
HpyAV CCTTC 8 cut(s) 66, 382, 460, 546, 573, 818, 984, 1028
HpyCH4III ACNGT 3 cut(s) 288, 836, 1126
HpyCH4V TGCA 4 cut(s) 502, 581, 734, 895
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 254, 274, 355, 551
HpyF3I CTNAG 5 cut(s) 297, 378, 713, 1077, 1116
Hsp92I GRCGYC 1 cut(s) 212
Hsp92II CATG 4 cut(s) 514, 585, 943, 967
Kpn2I TCCGGA 1 cut(s) 226
KpnI GGTACC 1 cut(s) 1249
Ksp22I TGATCA 2 cut(s) 772, 966
Kzo9I GATC 7 cut(s) 74, 415, 639, 772, 804, 966, 1040
LmnI GCTCC 3 cut(s) 253, 262, 363
Lsp1109I GCAGC 7 cut(s) 20, 355, 358, 538, 746, 911, 914
LweI GCATC 6 cut(s) 163, 364, 505, 568, 746, 1068
MaeI CTAG 2 cut(s) 243, 665
MaeIII GTNAC 3 cut(s) 959, 1195, 1255
MalI GATC 7 cut(s) 76, 417, 641, 774, 806, 968, 1042
MboI GATC 7 cut(s) 74, 415, 639, 772, 804, 966, 1040
MfeI CAATTG 2 cut(s) 39, 252
MflI RGATCY 2 cut(s) 74, 804
MhlI GDGCHC 1 cut(s) 250
MlsI TGGCCA 1 cut(s) 92
MluCI AATT 7 cut(s) 39, 61, 166, 252, 435, 506, 1155
MluNI TGGCCA 1 cut(s) 92
MlyI GAGTC 4 cut(s) 224, 281, 598, 677
MmeI TCCRAC 2 cut(s) 49, 657
Mox20I TGGCCA 1 cut(s) 92
Mph1103I ATGCAT 1 cut(s) 583
MroI TCCGGA 1 cut(s) 226
MscI TGGCCA 1 cut(s) 92
MseI TTAA 1 cut(s) 447
Msp20I TGGCCA 1 cut(s) 92
MspA1I CMGCKG 3 cut(s) 96, 173, 268
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 4 cut(s) 813, 873, 948, 1243
MunI CAATTG 2 cut(s) 39, 252
MvaI CCWGG 4 cut(s) 813, 873, 948, 1243
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 5 cut(s) 17, 254, 274, 355, 551
NdeII GATC 7 cut(s) 74, 415, 639, 772, 804, 966, 1040
NlaIII CATG 4 cut(s) 514, 585, 943, 967
NlaIV GGNNCC 5 cut(s) 100, 130, 534, 945, 1247
NmeAIII GCCGAG 2 cut(s) 596, 612
NsiI ATGCAT 1 cut(s) 583
NspV TTCGAA 1 cut(s) 59
PaeR7I CTCGAG 1 cut(s) 605
PceI AGGCCT 2 cut(s) 55, 871
PfeI GAWTC 3 cut(s) 887, 1130, 1238
PfoI TCCNGGA 1 cut(s) 946
PkrI GCNGC 9 cut(s) 10, 13, 46, 345, 348, 553, 736, 901, 904
PleI GAGTC 4 cut(s) 224, 280, 597, 677
PpsI GAGTC 4 cut(s) 224, 280, 597, 677
PpuMI RGGWCCY 2 cut(s) 195, 944
PsiI TTATAA 1 cut(s) 1109
Psp5II RGGWCCY 2 cut(s) 195, 944
Psp6I CCWGG 4 cut(s) 811, 871, 946, 1241
PspGI CCWGG 4 cut(s) 811, 871, 946, 1241
PspN4I GGNNCC 5 cut(s) 100, 130, 534, 945, 1247
PspPI GGNCC 4 cut(s) 98, 195, 944, 950
PspPPI RGGWCCY 2 cut(s) 195, 944
PspXI VCTCGAGB 1 cut(s) 605
PstNI CAGNNNCTG 2 cut(s) 413, 740
PsuI RGATCY 2 cut(s) 74, 804
PvuII CAGCTG 2 cut(s) 173, 268
RsaI GTAC 1 cut(s) 1247
RsaNI GTAC 1 cut(s) 1246
SaqAI TTAA 1 cut(s) 447
SatI GCNGC 9 cut(s) 9, 12, 45, 344, 347, 552, 735, 900, 903
Sau3AI GATC 7 cut(s) 74, 415, 639, 772, 804, 966, 1040
Sau96I GGNCC 4 cut(s) 98, 195, 944, 950
SchI GAGTC 4 cut(s) 224, 281, 598, 677
ScrFI CCNGG 4 cut(s) 813, 873, 948, 1243
SduI GDGCHC 1 cut(s) 250
SfaNI GCATC 6 cut(s) 163, 364, 505, 568, 746, 1068
Sfr274I CTCGAG 1 cut(s) 605
SfuI TTCGAA 1 cut(s) 59
SinI GGWCC 4 cut(s) 98, 195, 944, 950
SlaI CTCGAG 1 cut(s) 605
SmlI CTYRAG 4 cut(s) 605, 761, 788, 982
SmoI CTYRAG 4 cut(s) 605, 761, 788, 982
Sse9I AATT 7 cut(s) 39, 61, 166, 252, 435, 506, 1155
SseBI AGGCCT 2 cut(s) 55, 871
SsiI CCGC 9 cut(s) 12, 44, 96, 333, 370, 402, 440, 766, 979
SspMI CTAG 2 cut(s) 243, 665
StuI AGGCCT 2 cut(s) 55, 871
StyD4I CCNGG 4 cut(s) 811, 871, 946, 1241
StyI CCWWGG 2 cut(s) 198, 664
TaaI ACNGT 3 cut(s) 288, 836, 1126
TaqI TCGA 6 cut(s) 59, 351, 606, 686, 1005, 1043
TasI AATT 7 cut(s) 39, 61, 166, 252, 435, 506, 1155
TauI GCSGC 2 cut(s) 14, 47
TfiI GAWTC 3 cut(s) 887, 1130, 1238
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
TscAI CASTG 4 cut(s) 418, 825, 841, 1081
TseI GCWGC 7 cut(s) 8, 343, 346, 551, 734, 899, 902
TspDTI ATGAA 5 cut(s) 210, 471, 499, 815, 1158
TspGWI ACGGA 1 cut(s) 202
TspRI CASTG 4 cut(s) 418, 825, 841, 1081
VpaK11BI GGWCC 4 cut(s) 98, 195, 944, 950
XapI RAATTY 3 cut(s) 61, 166, 506
XcmI CCANNNNNNNNNTGG 1 cut(s) 526
XhoI CTCGAG 1 cut(s) 605
XmaJI CCTAGG 1 cut(s) 664
XspI CTAG 2 cut(s) 243, 665
Zsp2I ATGCAT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.