Rorug06G0410300

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004076
Physical Location & Seq
Reverse (-)
55251473 .. 55253348
1876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0410300.1

Sequence Viewer

Length: 1122 bp
ATGCGCTCTATCTTCTCCCTCTCTCTCTCTCTCTCTCTCTCTGTTAAATACCAAAATCGATCTAATGGAATGAAAAAATTAAATTTAATGCAGGATTGGGTGCCACAAATTGTGGACATTACCAAGAAGATGATGGAGGAGTGGGAGGATATAAGGGGAGGAAGAGATGAGTTTGAAATGGAGGTACACAAACAAATGCATGAGGTATCAGCAGATGTTATGTCCAGAACAGTTTTCGGAAGCAGTTTTGAAGAGGGAAAGCGTATTTTCAACTTGCAAAAACTGCAAATGCATCTTTTCCTTAAGGCAGTTCAGAGCATCTATATTCCTGGATTCAGATTTTTGCCTACCAAGGATAACAGAGAGAGATGGAGACTAAATAAGGAAATCTGTGAATCAATACGGATGTTGATTGTGAATAATAGCAAAAACCTAGAGGAATCAAAAGTTCTGCTGAGTCTATTAATGTCTTCTTACAAGAATCTGGATGGTGTAGAGGAAAAACTAGGACTACAGGAGATTATAGAAGAATGCAAGGCCTTTTACTTTGTTGGCAAGGAAACAATTGCTAATCTTTTGACTTGGTCACTTATCCTTCTGGCGCGGCATCAGGAATGGCAAAGCAAGGCTAGAGAAGAAGTGATTAGTTTCCTTTGTGGACACAATAAGCATCCAGTCGAAGAGAATTTGAACGACCTCAAGATTGTAAGCATGATAATTAATGAAGCACTTAGACTCTATCCTCCTGGTGTGCTACTAAATAGGCAAACATCAAAGAAGGTTAAGCTTGGGAGCCTGGAAATTCCTGCTGATACACAACTTGTCGTGCCCTTGATTGCTGTTCATCACGACACTGATATATGGGGTAAAGATGCCAATGAATTCAATCCATCAAGGTTCTTGGAGCCTCGAAGGCATTTAGCCTCGTTTCTTCCATTTGGTTTAGGGACCAGATACTGCCCCGGTCAGAATTTAGCACTTGTTGAAGCAAAACTGGTCTTAGCAATCATCGTCAGACACTATTCTTTCACGGTGTCACCTACATATGTCCATGCCCCAAAGTTGTATGTAAACTTAGAGCCCCAATTTGGCGCTCAACTCCTATTTACAAGGATTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0006950 GO:0006979 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0010035 GO:0010193 GO:0010224 GO:0042221 GO:0042493 GO:0046677 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

373

Amino Acids

43.1

Weight (kDa)

8.7

Isoelectric Point (pI)

50.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 23 - 347 1.5e-62 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 100
AccII CGCG 1 cut(s) 604
AciI CCGC 1 cut(s) 604
AcsI RAATTY 5 cut(s) 82, 685, 801, 881, 970
AfaI GTAC 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 1088
AflII CTTAAG 1 cut(s) 302
AgsI TTSAA 6 cut(s) 176, 251, 271, 691, 886, 986
AjnI CCWGG 3 cut(s) 328, 745, 795
AluBI AGCT 1 cut(s) 787
AluI AGCT 1 cut(s) 787
Alw26I GTCTC 1 cut(s) 367
AlwNI CAGNNNCTG 1 cut(s) 957
AoxI GGCC 1 cut(s) 537
ApoI RAATTY 5 cut(s) 82, 685, 801, 881, 970
AseI ATTAAT 2 cut(s) 464, 720
AspLEI GCGC 3 cut(s) 6, 604, 1094
AspS9I GGNCC 1 cut(s) 948
AsuC2I CCSGG 1 cut(s) 963
AsuHPI GGTGA 1 cut(s) 1029
AvaII GGWCC 1 cut(s) 948
BaeGI GKGCMC 1 cut(s) 831
BanI GGYRCC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 1083
BbsI GAAGAC 1 cut(s) 462
BccI CCATC 4 cut(s) 127, 363, 482, 898
BciT130I CCWGG 3 cut(s) 330, 747, 797
BcnI CCSGG 1 cut(s) 963
BcoDI GTCTC 1 cut(s) 367
BfaI CTAG 4 cut(s) 434, 506, 630, 1120
BfmI CTRYAG 1 cut(s) 512
BfoI RGCGCY 1 cut(s) 1095
BfrI CTTAAG 1 cut(s) 302
BglI GCCNNNNNGGC 1 cut(s) 913
BisI GCNGC 1 cut(s) 605
BlsI GCNGC 1 cut(s) 606
Bme1390I CCNGG 4 cut(s) 330, 747, 797, 963
Bme18I GGWCC 1 cut(s) 948
BmgT120I GGNCC 1 cut(s) 948
BmiI GGNNCC 4 cut(s) 102, 794, 906, 949
BmrFI CCNGG 4 cut(s) 330, 747, 797, 963
BmsI GCATC 5 cut(s) 301, 327, 616, 679, 862
BpiI GAAGAC 1 cut(s) 462
BpuEI CTTGAG 1 cut(s) 683
BpuMI CCSGG 1 cut(s) 963
Bsa29I ATCGAT 1 cut(s) 58
BsaJI CCNNGG 2 cut(s) 351, 961
Bsc4I CCNNNNNNNGG 1 cut(s) 1088
Bse1I ACTGG 2 cut(s) 674, 999
BseBI CCWGG 3 cut(s) 330, 747, 797
BseCI ATCGAT 1 cut(s) 58
BseDI CCNNGG 2 cut(s) 351, 961
BseGI GGATG 3 cut(s) 411, 493, 670
BseLI CCNNNNNNNGG 1 cut(s) 1088
BseMII CTCAG 1 cut(s) 446
BseNI ACTGG 2 cut(s) 674, 999
BseRI GAGGAG 1 cut(s) 152
BseSI GKGCMC 1 cut(s) 831
Bsh1236I CGCG 1 cut(s) 604
BshFI GGCC 1 cut(s) 539
BshNI GGYRCC 1 cut(s) 100
BshVI ATCGAT 1 cut(s) 58
BsiSI CCGG 1 cut(s) 963
BslFI GGGAC 1 cut(s) 961
BslI CCNNNNNNNGG 1 cut(s) 1088
BsmAI GTCTC 1 cut(s) 367
BsmFI GGGAC 1 cut(s) 961
BsmI GAATGC 1 cut(s) 536
BsnI GGCC 1 cut(s) 539
Bsp1286I GDGCHC 2 cut(s) 831, 1083
Bsp143I GATC 1 cut(s) 59
BspACI CCGC 1 cut(s) 604
BspANI GGCC 1 cut(s) 539
BspCNI CTCAG 1 cut(s) 447
BspDI ATCGAT 1 cut(s) 58
BspFNI CGCG 1 cut(s) 604
BspLI GGNNCC 4 cut(s) 102, 794, 906, 949
BspT107I GGYRCC 1 cut(s) 100
BspTI CTTAAG 1 cut(s) 302
BsrI ACTGG 2 cut(s) 674, 999
BssECI CCNNGG 2 cut(s) 351, 961
BssMI GATC 1 cut(s) 59
BssT1I CCWWGG 1 cut(s) 351
Bst2UI CCWGG 3 cut(s) 330, 747, 797
Bst4CI ACNGT 2 cut(s) 232, 1033
Bst6I CTCTTC 3 cut(s) 157, 246, 675
BstAFI CTTAAG 1 cut(s) 302
BstAPI GCANNNNNTGC 1 cut(s) 283
BstDEI CTNAG 4 cut(s) 455, 731, 1000, 1075
BstF5I GGATG 3 cut(s) 411, 493, 670
BstFNI CGCG 1 cut(s) 604
BstH2I RGCGCY 1 cut(s) 1095
BstHHI GCGC 3 cut(s) 6, 604, 1094
BstKTI GATC 1 cut(s) 62
BstMAI GTCTC 1 cut(s) 367
BstMBI GATC 1 cut(s) 59
BstMWI GCNNNNNNNGC 2 cut(s) 283, 913
BstNI CCWGG 3 cut(s) 330, 747, 797
BstSCI CCNGG 4 cut(s) 328, 745, 795, 961
BstSFI CTRYAG 1 cut(s) 512
BstSLI GKGCMC 1 cut(s) 831
BstUI CGCG 1 cut(s) 604
BstV2I GAAGAC 1 cut(s) 462
Bsu15I ATCGAT 1 cut(s) 58
BsuRI GGCC 1 cut(s) 539
BsuTUI ATCGAT 1 cut(s) 58
BtsCI GGATG 3 cut(s) 411, 493, 670
BtsIMutI CAGTG 1 cut(s) 852
CaiI CAGNNNCTG 1 cut(s) 957
CfoI GCGC 3 cut(s) 6, 604, 1094
Cfr13I GGNCC 1 cut(s) 948
ClaI ATCGAT 1 cut(s) 58
Csp6I GTAC 1 cut(s) 185
CviAII CATG 3 cut(s) 200, 712, 1052
CviJI RGCY 7 cut(s) 539, 629, 787, 795, 907, 923, 1081
CviKI_1 RGCY 7 cut(s) 539, 629, 787, 795, 907, 923, 1081
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 4 cut(s) 455, 731, 1000, 1075
DpnI GATC 1 cut(s) 61
DpnII GATC 1 cut(s) 59
Eam1104I CTCTTC 3 cut(s) 157, 246, 675
EarI CTCTTC 3 cut(s) 157, 246, 675
Eco130I CCWWGG 1 cut(s) 351
Eco147I AGGCCT 1 cut(s) 539
Eco24I GRGCYC 1 cut(s) 1083
Eco47I GGWCC 1 cut(s) 948
EcoRI GAATTC 1 cut(s) 881
EcoRII CCWGG 3 cut(s) 328, 745, 795
EcoT14I CCWWGG 1 cut(s) 351
EcoT22I ATGCAT 2 cut(s) 201, 294
EcoT38I GRGCYC 1 cut(s) 1083
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 3 cut(s) 203, 715, 1055
FaqI GGGAC 1 cut(s) 961
FatI CATG 3 cut(s) 199, 711, 1051
FauNDI CATATG 1 cut(s) 1045
Fnu4HI GCNGC 1 cut(s) 605
FokI GGATG 3 cut(s) 418, 500, 657
FriOI GRGCYC 1 cut(s) 1083
Fsp4HI GCNGC 1 cut(s) 605
FspBI CTAG 4 cut(s) 434, 506, 630, 1120
GlaI GCGC 3 cut(s) 5, 603, 1093
GluI GCNGC 1 cut(s) 605
HaeII RGCGCY 1 cut(s) 1095
HaeIII GGCC 1 cut(s) 539
HapII CCGG 1 cut(s) 963
HhaI GCGC 3 cut(s) 6, 604, 1094
Hin1II CATG 3 cut(s) 203, 715, 1055
Hin6I GCGC 3 cut(s) 4, 602, 1092
HinP1I GCGC 3 cut(s) 4, 602, 1092
HindIII AAGCTT 1 cut(s) 785
HinfI GANTC 7 cut(s) 333, 395, 440, 457, 481, 735, 1114
HpaII CCGG 1 cut(s) 963
HphI GGTGA 1 cut(s) 1029
Hpy166II GTNNAC 4 cut(s) 115, 187, 659, 1072
Hpy188I TCNGA 5 cut(s) 239, 315, 338, 969, 1016
Hpy188III TCNNGA 5 cut(s) 225, 485, 611, 700, 848
Hpy8I GTNNAC 4 cut(s) 115, 187, 659, 1072
HpyAV CCTTC 3 cut(s) 605, 772, 906
HpyCH4III ACNGT 2 cut(s) 232, 1033
HpyCH4V TGCA 6 cut(s) 91, 199, 277, 286, 292, 534
HpyF10VI GCNNNNNNNGC 2 cut(s) 283, 913
HpyF3I CTNAG 4 cut(s) 455, 731, 1000, 1075
Hsp92II CATG 3 cut(s) 203, 715, 1055
HspAI GCGC 3 cut(s) 4, 602, 1092
Kzo9I GATC 1 cut(s) 59
LmnI GCTCC 2 cut(s) 792, 904
LweI GCATC 5 cut(s) 301, 327, 616, 679, 862
MaeI CTAG 4 cut(s) 434, 506, 630, 1120
MaeIII GTNAC 2 cut(s) 585, 1035
MalI GATC 1 cut(s) 61
MboI GATC 1 cut(s) 59
MboII GAAGA 9 cut(s) 4, 139, 174, 263, 462, 539, 647, 692, 923
MfeI CAATTG 1 cut(s) 564
MhlI GDGCHC 2 cut(s) 831, 1083
MlyI GAGTC 2 cut(s) 466, 729
Mph1103I ATGCAT 2 cut(s) 201, 294
MseI TTAA 7 cut(s) 45, 80, 86, 303, 464, 720, 783
MspCI CTTAAG 1 cut(s) 302
MspI CCGG 1 cut(s) 963
MspR9I CCNGG 4 cut(s) 330, 747, 797, 963
MunI CAATTG 1 cut(s) 564
Mva1269I GAATGC 1 cut(s) 536
MvaI CCWGG 3 cut(s) 330, 747, 797
MvnI CGCG 1 cut(s) 604
MwoI GCNNNNNNNGC 2 cut(s) 283, 913
NciI CCSGG 1 cut(s) 963
NdeI CATATG 1 cut(s) 1045
NdeII GATC 1 cut(s) 59
NlaIII CATG 3 cut(s) 203, 715, 1055
NlaIV GGNNCC 4 cut(s) 102, 794, 906, 949
NmuCI GTSAC 2 cut(s) 585, 1035
NsiI ATGCAT 2 cut(s) 201, 294
PceI AGGCCT 1 cut(s) 539
PctI GAATGC 1 cut(s) 536
PfeI GAWTC 5 cut(s) 333, 395, 440, 481, 1114
PflFI GACNNNGTC 1 cut(s) 583
PfoI TCCNGGA 1 cut(s) 328
PkrI GCNGC 1 cut(s) 606
PleI GAGTC 2 cut(s) 465, 729
PpsI GAGTC 2 cut(s) 465, 729
PshBI ATTAAT 2 cut(s) 464, 720
Psp6I CCWGG 3 cut(s) 328, 745, 795
PspGI CCWGG 3 cut(s) 328, 745, 795
PspN4I GGNNCC 4 cut(s) 102, 794, 906, 949
PspPI GGNCC 1 cut(s) 948
PstNI CAGNNNCTG 1 cut(s) 957
PsyI GACNNNGTC 1 cut(s) 583
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SaqAI TTAA 7 cut(s) 45, 80, 86, 303, 464, 720, 783
SatI GCNGC 1 cut(s) 605
Sau3AI GATC 1 cut(s) 59
Sau96I GGNCC 1 cut(s) 948
SchI GAGTC 2 cut(s) 466, 729
ScrFI CCNGG 4 cut(s) 330, 747, 797, 963
SduI GDGCHC 2 cut(s) 831, 1083
SetI ASST 8 cut(s) 186, 207, 435, 699, 783, 789, 899, 1042
SfaNI GCATC 5 cut(s) 301, 327, 616, 679, 862
SfcI CTRYAG 1 cut(s) 512
SinI GGWCC 1 cut(s) 948
SmlI CTYRAG 2 cut(s) 302, 698
SmoI CTYRAG 2 cut(s) 302, 698
SseBI AGGCCT 1 cut(s) 539
SsiI CCGC 1 cut(s) 604
SspMI CTAG 4 cut(s) 434, 506, 630, 1120
StuI AGGCCT 1 cut(s) 539
StyD4I CCNGG 4 cut(s) 328, 745, 795, 961
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 2 cut(s) 232, 1033
TaqI TCGA 3 cut(s) 58, 678, 910
TauI GCSGC 1 cut(s) 607
TfiI GAWTC 5 cut(s) 333, 395, 440, 481, 1114
Tru1I TTAA 7 cut(s) 45, 80, 86, 303, 464, 720, 783
Tru9I TTAA 7 cut(s) 45, 80, 86, 303, 464, 720, 783
TscAI CASTG 1 cut(s) 859
TseFI GTSAC 2 cut(s) 585, 1035
Tsp45I GTSAC 2 cut(s) 585, 1035
TspDTI ATGAA 4 cut(s) 86, 738, 833, 894
TspGWI ACGGA 1 cut(s) 418
TspRI CASTG 1 cut(s) 859
Tth111I GACNNNGTC 1 cut(s) 583
Vha464I CTTAAG 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 948
VspI ATTAAT 2 cut(s) 464, 720
XapI RAATTY 5 cut(s) 82, 685, 801, 881, 970
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XspI CTAG 4 cut(s) 434, 506, 630, 1120
Zsp2I ATGCAT 2 cut(s) 201, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.