Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006594

Physical Location & Seq

Genomic Coordinates Forward (+)

6123341 .. 6126281

Gene Structure 2941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G17880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGTGGATGCGATTCAAGTAGCTGAGCTGAGAAGATTCGTCGAGCAGTTGAAATTGAATCCTTCGATTCTCCACGATCCTAGTCTGGTTTTCTTCAAAGAATATCTCCGAAGTTTAGGAGCTCAAGTTCCGAAGATTGAGAAAACTGAAAGAGATTATGAAGATAAGGCTGAGACAAAACCCAGTTTCTCTCCTAAACATGATGATGATGATGATGATATTATGGAGTCTGATGTTGAACTCGACAACTCTGATGTAGTTGAACCAGACAATGAGCCTCCTCAGCCGATGGGAGACCCTACTGCTGAAGTGACCGATGAAAATAGGGATGATGCTCAGTCAGAGAAGAGCAAAGCTATGGAGGCAATCTCTGATGGGAGGTTTGACGAAGCTATAGAGCATCTAACAAAAGCTGTCATGCTAAATCCTACTTCAGCGATTCTCTACGCCACTAGAGCTAGTGTGTTTTTAAAAGTTAAGAAGCCAAATGCTGCAATTCGTGATGCCAACGTAGCGTTACAGTTCAACTCTGATTCAGCTAAGGGGTACAAATCACGAGGTATGGCTAAGGCCATGTTAGGCCAATGGGAAGAGGCTGCAGCTGATCTACATGTCGCATCAAAATTAGATTACGATGAGGAGATAGGGACAATGCTTAAGAAGGTTGAACCCAATGCAAAGAGAATCGAAGAACACCGCAGGAAATACCAACGCCTGAGGAAAGAAAAGGAGCTCCAAAGGGCTGAACGCGAGAGACGGAAACAGCAAGAAGCCCAGGAGCGAGAAGCTCAGGCTGCACTCAATGACGGAGAAGTGATTAGCATCCACTCAACAAGCGAGCTAGAAGCAAAGACAAAGGCTGCTAAGAAGGCATCACGTCTGCTCATCCTTTACTTCACAGCCACATGGTGTGGGCCATGCCGATATATGTCTCCTCTGTACTCAAACCTGGCCACACAGCACTCGAGAGTCGTTTTCTTGAAAGTTGATATAGACAAGGCCAATGACGTGGCTGCTTCTTGGAACATTAGCAGCGTCCCGACCTTTTGCTTCATCAGAGATGGCAAAGAGGTGGACAAAGTTGTCGGAGCTGATAAAGGTTCGCTTGAGCAGAAGATTGCACAGCACTCTTCTTCTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006457 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016043 GO:0016491 GO:0016667 GO:0016671 GO:0022607 GO:0030544 GO:0031072 GO:0042802 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0055114 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

380

Amino Acids

42.85

Weight (kDa)

5.5

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HipN	PF18253	3 - 44	1e-16	Hsp70-interacting protein N N-terminal domain
Thioredoxin	PF00085	281 - 367	6.7e-24	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17880 AT3G17880
fragaria_vesca	FvH4_5g17540 FvH4_5g17540 FvH4_5g17540 FvH4_5g17540
malus_domestica	MD06G1228800.v1.1 MD14G1238000.v1.1
prunus_persica	Prupe.2G018600_v2.0.a1 Prupe.2G018600_v2.0.a1 Prupe.2G018600_v2.0.a1 Prupe.2G018700_v2.0.a1 Prupe.5G235200_v2.0.a1
pyrus_communis	pycom06g20510 pycom14g19910
rosa_chinensis	RchiOBHm_Chr7g0178111
rosa_laevigata	RLG00000005470
rosa_multiflora	Rmu_sc0000425.1_g000010
rosa_roxburghii	Rroxscaffold_3G00275170
rosa_rugosa	Rorug06G0413500 Rorug06G0413600
rosa_samantha	Rh7AG012900 Rh7BG012800 Rh7CG012800 Rh7DG013100
rosa_wichuraiana	Rw7G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1082
AccII	CGCG	1 cut(s)	750
AciI	CCGC	1 cut(s)	697
AclWI	GGATC	1 cut(s)	71
AcoI	YGGCCR	1 cut(s)	951
AcuI	CTGAAG	2 cut(s)	327, 417
AdeI	CACNNNGTG	1 cut(s)	909
AfaI	GTAC	2 cut(s)	548, 941
AflII	CTTAAG	1 cut(s)	656
AflIII	ACRYGT	1 cut(s)	610
AgsI	TTSAA	9 cut(s)	17, 52, 58, 97, 239, 263, 526, 668, 982
AjiI	CACGTC	2 cut(s)	878, 1009
AjnI	CCWGG	2 cut(s)	774, 948
AloI	GAACNNNNNNTCC	2 cut(s)	111, 143
Alw21I	GWGCWC	2 cut(s)	124, 735
Alw26I	GTCTC	4 cut(s)	167, 288, 748, 936
AlwI	GGATC	1 cut(s)	71
Ama87I	CYCGRG	1 cut(s)	964
AoxI	GGCC	5 cut(s)	570, 580, 914, 951, 999
ApeKI	GCWGC	7 cut(s)	491, 596, 599, 794, 860, 1013, 1032
AspS9I	GGNCC	1 cut(s)	914
AvaI	CYCGRG	1 cut(s)	964
AxyI	CCTNAGG	1 cut(s)	716
BalI	TGGCCA	1 cut(s)	953
BanII	GRGCYC	2 cut(s)	124, 735
BauI	CACGAG	1 cut(s)	555
Bbv12I	GWGCWC	2 cut(s)	124, 735
BbvCI	CCTCAGC	1 cut(s)	282
BbvI	GCAGC	7 cut(s)	478, 583, 611, 781, 847, 1000, 1044
BccI	CCATC	3 cut(s)	283, 368, 1055
BciT130I	CCWGG	2 cut(s)	776, 950
BcoDI	GTCTC	4 cut(s)	167, 288, 748, 936
BfaI	CTAG	4 cut(s)	81, 453, 459, 842
BfmI	CTRYAG	2 cut(s)	393, 597
BfrI	CTTAAG	1 cut(s)	656
BisI	GCNGC	7 cut(s)	492, 597, 600, 795, 861, 1014, 1033
BlpI	GCTNAGC	1 cut(s)	24
BlsI	GCNGC	7 cut(s)	493, 598, 601, 796, 862, 1015, 1034
Bme1390I	CCNGG	2 cut(s)	776, 950
BmeT110I	CYCGRG	1 cut(s)	964
BmgBI	CACGTC	2 cut(s)	878, 1009
BmgT120I	GGNCC	1 cut(s)	914
BmrFI	CCNGG	2 cut(s)	776, 950
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	6 cut(s)	322, 409, 493, 626, 831, 881
BmuI	ACTGGG	1 cut(s)	177
BplI	GAGNNNNNCTC	2 cut(s)	353, 385
Bpu10I	CCTNAGC	4 cut(s)	282, 540, 567, 789
Bpu1102I	GCTNAGC	1 cut(s)	24
BpuEI	CTTGAG	2 cut(s)	108, 1127
BsaBI	GATNNNNATC	1 cut(s)	821
BsaI	GGTCTC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	774
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bse1I	ACTGG	1 cut(s)	183
Bse21I	CCTNAGG	1 cut(s)	716
Bse8I	GATNNNNATC	1 cut(s)	821
BseBI	CCWGG	2 cut(s)	776, 950
BseDI	CCNNGG	1 cut(s)	774
BseGI	GGATG	4 cut(s)	13, 334, 822, 885
BseJI	GATNNNNATC	1 cut(s)	821
BseMII	CTCAG	7 cut(s)	15, 20, 162, 296, 350, 707, 803
BseNI	ACTGG	1 cut(s)	183
BseRI	GAGGAG	3 cut(s)	270, 653, 924
BseXI	GCAGC	7 cut(s)	478, 583, 611, 781, 847, 1000, 1044
BsgI	GTGCAG	1 cut(s)	780
Bsh1236I	CGCG	1 cut(s)	750
BshFI	GGCC	5 cut(s)	572, 582, 916, 953, 1001
BsiHKAI	GWGCWC	2 cut(s)	124, 735
BsiHKCI	CYCGRG	1 cut(s)	964
BslFI	GGGAC	2 cut(s)	661, 1022
BsmAI	GTCTC	4 cut(s)	167, 288, 748, 936
BsmBI	CGTCTC	1 cut(s)	748
BsmFI	GGGAC	2 cut(s)	661, 1022
BsnI	GGCC	5 cut(s)	572, 582, 916, 953, 1001
Bso31I	GGTCTC	1 cut(s)	288
BsoBI	CYCGRG	1 cut(s)	964
Bsp1286I	GDGCHC	2 cut(s)	124, 735
Bsp143I	GATC	2 cut(s)	76, 604
Bsp1720I	GCTNAGC	1 cut(s)	24
BspACI	CCGC	1 cut(s)	697
BspANI	GGCC	5 cut(s)	572, 582, 916, 953, 1001
BspCNI	CTCAG	7 cut(s)	16, 21, 163, 295, 349, 708, 802
BspFNI	CGCG	1 cut(s)	750
BspMAI	CTGCAG	1 cut(s)	601
BspPI	GGATC	1 cut(s)	71
BspQI	GCTCTTC	1 cut(s)	341
BspTI	CTTAAG	1 cut(s)	656
BspTNI	GGTCTC	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	774
BssMI	GATC	2 cut(s)	76, 604
BssSI	CACGAG	1 cut(s)	555
Bst2BI	CACGAG	1 cut(s)	555
Bst2UI	CCWGG	2 cut(s)	776, 950
Bst4CI	ACNGT	1 cut(s)	522
Bst6I	CTCTTC	3 cut(s)	341, 585, 1135
BstAFI	CTTAAG	1 cut(s)	656
BstC8I	GCNNGC	1 cut(s)	839
BstF5I	GGATG	4 cut(s)	13, 334, 822, 885
BstFNI	CGCG	1 cut(s)	750
BstKTI	GATC	2 cut(s)	79, 607
BstMAI	GTCTC	4 cut(s)	167, 288, 748, 936
BstMBI	GATC	2 cut(s)	76, 604
BstMWI	GCNNNNNNNGC	6 cut(s)	283, 362, 455, 512, 794, 869
BstNI	CCWGG	2 cut(s)	776, 950
BstNSI	RCATGY	1 cut(s)	614
BstSCI	CCNGG	2 cut(s)	774, 948
BstSFI	CTRYAG	2 cut(s)	393, 597
BstUI	CGCG	1 cut(s)	750
BstV1I	GCAGC	7 cut(s)	478, 583, 611, 781, 847, 1000, 1044
BstXI	CCANNNNNNTGG	1 cut(s)	1009
Bsu36I	CCTNAGG	1 cut(s)	716
BsuRI	GGCC	5 cut(s)	572, 582, 916, 953, 1001
BtrI	CACGTC	2 cut(s)	878, 1009
BtsCI	GGATG	4 cut(s)	13, 334, 822, 885
Cac8I	GCNNGC	1 cut(s)	839
Cfr13I	GGNCC	1 cut(s)	914
CseI	GACGC	1 cut(s)	1024
Csp6I	GTAC	2 cut(s)	547, 940
CviAII	CATG	6 cut(s)	200, 418, 574, 611, 906, 918
CviQI	GTAC	2 cut(s)	547, 940
DpnI	GATC	2 cut(s)	78, 606
DpnII	GATC	2 cut(s)	76, 604
DraI	TTTAAA	1 cut(s)	471
DraIII	CACNNNGTG	1 cut(s)	909
DrdI	GACNNNNNNGTC	1 cut(s)	1082
DseDI	GACNNNNNNGTC	1 cut(s)	1082
EaeI	YGGCCR	1 cut(s)	951
Eam1104I	CTCTTC	3 cut(s)	341, 585, 1135
EarI	CTCTTC	3 cut(s)	341, 585, 1135
Ecl136II	GAGCTC	2 cut(s)	122, 733
Eco24I	GRGCYC	2 cut(s)	124, 735
Eco31I	GGTCTC	1 cut(s)	288
Eco53kI	GAGCTC	2 cut(s)	122, 733
Eco57I	CTGAAG	2 cut(s)	327, 417
Eco81I	CCTNAGG	1 cut(s)	716
Eco88I	CYCGRG	1 cut(s)	964
EcoICRI	GAGCTC	2 cut(s)	122, 733
EcoRII	CCWGG	2 cut(s)	774, 948
EcoT38I	GRGCYC	2 cut(s)	124, 735
Esp3I	CGTCTC	1 cut(s)	748
FaeI	CATG	6 cut(s)	203, 421, 577, 614, 909, 921
FalI	AAGNNNNNCTT	2 cut(s)	1089, 1121
FaqI	GGGAC	2 cut(s)	661, 1022
FatI	CATG	6 cut(s)	199, 417, 573, 610, 905, 917
Fnu4HI	GCNGC	7 cut(s)	492, 597, 600, 795, 861, 1014, 1033
FokI	GGATG	4 cut(s)	20, 341, 809, 872
FriOI	GRGCYC	2 cut(s)	124, 735
Fsp4HI	GCNGC	7 cut(s)	492, 597, 600, 795, 861, 1014, 1033
FspBI	CTAG	4 cut(s)	81, 453, 459, 842
GluI	GCNGC	7 cut(s)	492, 597, 600, 795, 861, 1014, 1033
HaeIII	GGCC	5 cut(s)	572, 582, 916, 953, 1001
HgaI	GACGC	1 cut(s)	1024
Hin1II	CATG	6 cut(s)	203, 421, 577, 614, 909, 921
HinfI	GANTC	9 cut(s)	13, 36, 58, 67, 227, 439, 533, 684, 969
Hpy166II	GTNNAC	1 cut(s)	1075
Hpy188I	TCNGA	9 cut(s)	110, 132, 232, 253, 343, 373, 532, 1058, 1088
Hpy188III	TCNNGA	5 cut(s)	500, 555, 966, 979, 1039
Hpy8I	GTNNAC	1 cut(s)	1075
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	3 cut(s)	72, 655, 862
HpyCH4III	ACNGT	1 cut(s)	522
HpyCH4IV	ACGT	3 cut(s)	510, 877, 1008
HpyCH4V	TGCA	5 cut(s)	494, 599, 677, 797, 1121
HpyF10VI	GCNNNNNNNGC	6 cut(s)	283, 362, 455, 512, 794, 869
HpySE526I	ACGT	3 cut(s)	510, 877, 1008
Hsp92II	CATG	6 cut(s)	203, 421, 577, 614, 909, 921
Kzo9I	GATC	2 cut(s)	76, 604
LguI	GCTCTTC	1 cut(s)	341
LmnI	GCTCC	5 cut(s)	119, 730, 738, 778, 1088
Lsp1109I	GCAGC	7 cut(s)	478, 583, 611, 781, 847, 1000, 1044
LweI	GCATC	6 cut(s)	322, 409, 493, 626, 831, 881
MaeI	CTAG	4 cut(s)	81, 453, 459, 842
MaeII	ACGT	3 cut(s)	510, 877, 1008
MaeIII	GTNAC	2 cut(s)	310, 516
MalI	GATC	2 cut(s)	78, 606
MboI	GATC	2 cut(s)	76, 604
MhlI	GDGCHC	2 cut(s)	124, 735
MlsI	TGGCCA	1 cut(s)	953
MluCI	AATT	3 cut(s)	53, 495, 623
MluNI	TGGCCA	1 cut(s)	953
MlyI	GAGTC	2 cut(s)	236, 978
MmeI	TCCRAC	1 cut(s)	1066
Mox20I	TGGCCA	1 cut(s)	953
MscI	TGGCCA	1 cut(s)	953
MseI	TTAA	3 cut(s)	470, 477, 657
MslI	CAYNNNNRTG	1 cut(s)	204
Msp20I	TGGCCA	1 cut(s)	953
MspA1I	CMGCKG	1 cut(s)	602
MspCI	CTTAAG	1 cut(s)	656
MspR9I	CCNGG	2 cut(s)	776, 950
MvaI	CCWGG	2 cut(s)	776, 950
MvnI	CGCG	1 cut(s)	750
MwoI	GCNNNNNNNGC	6 cut(s)	283, 362, 455, 512, 794, 869
NdeII	GATC	2 cut(s)	76, 604
NlaIII	CATG	6 cut(s)	203, 421, 577, 614, 909, 921
NmuCI	GTSAC	1 cut(s)	310
NspI	RCATGY	1 cut(s)	614
PaeR7I	CTCGAG	1 cut(s)	964
PciI	ACATGT	1 cut(s)	610
PciSI	GCTCTTC	1 cut(s)	341
PfeI	GAWTC	7 cut(s)	13, 36, 58, 67, 439, 533, 684
PkrI	GCNGC	7 cut(s)	493, 598, 601, 796, 862, 1015, 1034
PleI	GAGTC	2 cut(s)	235, 977
PpsI	GAGTC	2 cut(s)	235, 977
PscI	ACATGT	1 cut(s)	610
Psp124BI	GAGCTC	2 cut(s)	124, 735
Psp6I	CCWGG	2 cut(s)	774, 948
PspGI	CCWGG	2 cut(s)	774, 948
PspPI	GGNCC	1 cut(s)	914
PstI	CTGCAG	1 cut(s)	601
PvuII	CAGCTG	1 cut(s)	602
RsaI	GTAC	2 cut(s)	548, 941
RsaNI	GTAC	2 cut(s)	547, 940
RseI	CAYNNNNRTG	1 cut(s)	204
SacI	GAGCTC	2 cut(s)	124, 735
SapI	GCTCTTC	1 cut(s)	341
SaqAI	TTAA	3 cut(s)	470, 477, 657
SatI	GCNGC	7 cut(s)	492, 597, 600, 795, 861, 1014, 1033
Sau3AI	GATC	2 cut(s)	76, 604
Sau96I	GGNCC	1 cut(s)	914
SchI	GAGTC	2 cut(s)	236, 978
ScrFI	CCNGG	2 cut(s)	776, 950
SduI	GDGCHC	2 cut(s)	124, 735
SfaNI	GCATC	6 cut(s)	322, 409, 493, 626, 831, 881
SfcI	CTRYAG	2 cut(s)	393, 597
Sfr274I	CTCGAG	1 cut(s)	964
SlaI	CTCGAG	1 cut(s)	964
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	4 cut(s)	123, 656, 964, 1106
SmoI	CTYRAG	4 cut(s)	123, 656, 964, 1106
Sse9I	AATT	3 cut(s)	53, 495, 623
SsiI	CCGC	1 cut(s)	697
SspMI	CTAG	4 cut(s)	81, 453, 459, 842
SstI	GAGCTC	2 cut(s)	124, 735
StyD4I	CCNGG	2 cut(s)	774, 948
TaaI	ACNGT	1 cut(s)	522
TaiI	ACGT	3 cut(s)	513, 880, 1011
TaqI	TCGA	5 cut(s)	42, 65, 243, 687, 965
TaqII	GACCGA	1 cut(s)	329
TasI	AATT	3 cut(s)	53, 495, 623
TatI	WGTACW	1 cut(s)	939
TfiI	GAWTC	7 cut(s)	13, 36, 58, 67, 439, 533, 684
Tru1I	TTAA	3 cut(s)	470, 477, 657
Tru9I	TTAA	3 cut(s)	470, 477, 657
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	7 cut(s)	491, 596, 599, 794, 860, 1013, 1032
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	3 cut(s)	174, 333, 1042
TspGWI	ACGGA	2 cut(s)	772, 822
Vha464I	CTTAAG	1 cut(s)	656
XceI	RCATGY	1 cut(s)	614
XhoI	CTCGAG	1 cut(s)	964
XspI	CTAG	4 cut(s)	81, 453, 459, 842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.