Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006594

Physical Location & Seq

Genomic Coordinates Reverse (-)

10028688 .. 10031472

Gene Structure 2785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g17540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGACGCTGCCAAAGTAGCCGAACTGAACGAGTTCATCACTAAACTCAAGTCAAACCCGTCAATCCTTCACAACCCTTCTCTTGCTTTCTTCAAGTCCTATCTCCAAAGCTTAGGTGCTCGAATTCCAGTAGACCCAAAAATGGAAACTAAAGAAGAGTTTGATGATGACATTGTTGAGTCCGATATTGAGTTGGATGATGCTGATGTTGTGGAGCCTGATAATGATTCTCCACAACAGATGGGAGATCCATCTGTTGAAGTTACAGAAGAAATGCAGGATGCTGCGCAGTTAGCGAAATTGAGAGCTATGGATGCTGTTGCTGAAGGTAAGCTGGATGAGGCCATAGATCATATAACAGAAGCCATCATGTTGAATCCAACTTCAGCCATACTAAAAGCATCCAGAGCTAGTATCTTTGTCAAATTGAACAAACCAAATGCGGCAATTCGTGATGCTAATGCAGCTATAGAGATCAACCCAGACTCAGCAAAAGGATATAAAATAAGAGGAACCGCAAAGGCTATGTTGGGCCACTGGGAAGAAGCAGCAAGTGACCTGCGTATAGCATCCAAACTAGATTATGATGAGGAGATTGGTTCAGTGCTTAAAAAGGTTGAACCTAATGCCAGAAAAATTGAAGAGCATCGCAAAAAGTATCAACGGTTGCAGAAAGAAAGGGAGATGAAAATGGCTGAACGTGAGAGAAAGAGGCAAGCTGAAGCTCGAGAACGGGATGCGTTGTCTGCCCTGAAGGATGGGCAAGTCATTGCTATACACGCAGCCAGTGAACTTGAGACAAAGCTGAATGCTGCCTCAAAGACATCGCGTCTTGCAATCCTCTACTTCACGGCGACATGGTGTGGTCCTTGCCGTATGATATCTCCAATATATACAAGCTTAGCTGAAAAGTATCCAAAAGTAGTTTTCACGAAAATTGACATAGATGCAGCAAGAGATGTAGCTGCAAGCTGGAATATCAGCAGTGTTCCGGCCTTTTTCTTTGTAAGAAATGGTAAGGAGATTGACAAGGTTGTGGGTGCTGATAAAGCTGCGCTAGAAAAGAAGGTTGCACAATATGCAGGCTCAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006457 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016043 GO:0016491 GO:0016667 GO:0016671 GO:0022607 GO:0030544 GO:0031072 GO:0042802 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0055114 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

365

Amino Acids

40.3

Weight (kDa)

5.44

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HipN	PF18253	2 - 43	1.5e-17	Hsp70-interacting protein N N-terminal domain
Thioredoxin	PF00085	268 - 358	4.5e-24	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17880 AT3G17880
fragaria_vesca	FvH4_5g17540 FvH4_5g17540 FvH4_5g17540 FvH4_5g17540
malus_domestica	MD06G1228800.v1.1 MD14G1238000.v1.1
prunus_persica	Prupe.2G018600_v2.0.a1 Prupe.2G018600_v2.0.a1 Prupe.2G018600_v2.0.a1 Prupe.2G018700_v2.0.a1 Prupe.5G235200_v2.0.a1
pyrus_communis	pycom06g20510 pycom14g19910
rosa_chinensis	RchiOBHm_Chr7g0178111
rosa_laevigata	RLG00000005470
rosa_multiflora	Rmu_sc0000425.1_g000010
rosa_roxburghii	Rroxscaffold_3G00275170
rosa_rugosa	Rorug06G0413500 Rorug06G0413600
rosa_samantha	Rh7AG012900 Rh7BG012800 Rh7CG012800 Rh7DG013100
rosa_wichuraiana	Rw7G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	288
Acc36I	ACCTGC	1 cut(s)	567
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	1 cut(s)	829
AciI	CCGC	2 cut(s)	443, 516
AclWI	GGATC	1 cut(s)	242
AcsI	RAATTY	1 cut(s)	123
AcuI	CTGAAG	4 cut(s)	345, 369, 741, 773
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	6 cut(s)	94, 260, 376, 430, 620, 641
AhdI	GACNNNNNGTC	1 cut(s)	828
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	791
AlwI	GGATC	1 cut(s)	242
Ama87I	CYCGRG	1 cut(s)	726
AoxI	GGCC	3 cut(s)	342, 532, 993
ApeKI	GCWGC	9 cut(s)	8, 284, 464, 548, 782, 812, 950, 965, 1052
ApoI	RAATTY	1 cut(s)	123
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	2 cut(s)	289, 1057
AspS9I	GGNCC	2 cut(s)	532, 866
AvaI	CYCGRG	1 cut(s)	726
AvaII	GGWCC	1 cut(s)	866
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	8 cut(s)	271, 476, 560, 794, 799, 952, 962, 1039
BccI	CCATC	4 cut(s)	235, 259, 374, 752
BceAI	ACGGC	2 cut(s)	858, 867
BciVI	GTATCC	1 cut(s)	924
BcoDI	GTCTC	1 cut(s)	791
BfaI	CTAG	3 cut(s)	411, 578, 1058
BfmI	CTRYAG	1 cut(s)	468
BfuAI	ACCTGC	1 cut(s)	567
BfuI	GTATCC	1 cut(s)	924
BlpI	GCTNAGC	2 cut(s)	901, 1087
Bme18I	GGWCC	1 cut(s)	866
BmeRI	GACNNNNNGTC	1 cut(s)	828
BmeT110I	CYCGRG	1 cut(s)	726
BmgT120I	GGNCC	2 cut(s)	532, 866
BmiI	GGNNCC	2 cut(s)	216, 514
BmrI	ACTGGG	1 cut(s)	547
BmsI	GCATC	9 cut(s)	190, 271, 304, 410, 445, 578, 655, 727, 937
BmuI	ACTGGG	1 cut(s)	547
Bpu10I	CCTNAGC	1 cut(s)	112
Bpu1102I	GCTNAGC	2 cut(s)	901, 1087
BpuEI	CTTGAG	2 cut(s)	32, 815
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse1I	ACTGG	3 cut(s)	128, 542, 786
Bse3DI	GCAATG	1 cut(s)	768
BseGI	GGATG	8 cut(s)	202, 286, 319, 343, 401, 569, 742, 763
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMI	GCAATG	1 cut(s)	768
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	3 cut(s)	128, 542, 786
BseRI	GAGGAG	1 cut(s)	605
BseXI	GCAGC	8 cut(s)	271, 476, 560, 794, 799, 952, 962, 1039
Bsh1236I	CGCG	1 cut(s)	829
BshFI	GGCC	3 cut(s)	344, 534, 995
BsiHKAI	GWGCWC	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	726
BsiSI	CCGG	1 cut(s)	992
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	1 cut(s)	791
BsmI	GAATGC	1 cut(s)	814
BsnI	GGCC	3 cut(s)	344, 534, 995
BsoBI	CYCGRG	1 cut(s)	726
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	3 cut(s)	247, 349, 474
Bsp1720I	GCTNAGC	2 cut(s)	901, 1087
BspACI	CCGC	2 cut(s)	443, 516
BspANI	GGCC	3 cut(s)	344, 534, 995
BspCNI	CTCAG	1 cut(s)	500
BspFNI	CGCG	1 cut(s)	829
BspLI	GGNNCC	2 cut(s)	216, 514
BspMI	ACCTGC	1 cut(s)	567
BspPI	GGATC	1 cut(s)	242
BspQI	GCTCTTC	1 cut(s)	636
BsrDI	GCAATG	1 cut(s)	768
BsrI	ACTGG	3 cut(s)	128, 542, 786
BssMI	GATC	3 cut(s)	247, 349, 474
Bst4CI	ACNGT	1 cut(s)	666
Bst6I	CTCTTC	2 cut(s)	150, 636
BstAPI	GCANNNNNTGC	1 cut(s)	1079
BstC8I	GCNNGC	3 cut(s)	717, 970, 1084
BstDEI	CTNAG	4 cut(s)	112, 487, 901, 1087
BstF5I	GGATG	8 cut(s)	202, 286, 319, 343, 401, 569, 742, 763
BstFNI	CGCG	1 cut(s)	829
BstHHI	GCGC	2 cut(s)	289, 1057
BstKTI	GATC	3 cut(s)	250, 352, 477
BstMAI	GTCTC	1 cut(s)	791
BstMBI	GATC	3 cut(s)	247, 349, 474
BstSFI	CTRYAG	1 cut(s)	468
BstUI	CGCG	1 cut(s)	829
BstV1I	GCAGC	8 cut(s)	271, 476, 560, 794, 799, 952, 962, 1039
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuI	GTATCC	1 cut(s)	924
BsuRI	GGCC	3 cut(s)	344, 534, 995
BtgZI	GCGATG	2 cut(s)	632, 810
BtsCI	GGATG	8 cut(s)	202, 286, 319, 343, 401, 569, 742, 763
BtsI	GCAGTG	1 cut(s)	991
BtsIMutI	CAGTG	4 cut(s)	535, 609, 793, 991
BveI	ACCTGC	1 cut(s)	567
Cac8I	GCNNGC	3 cut(s)	717, 970, 1084
CfoI	GCGC	2 cut(s)	289, 1057
Cfr13I	GGNCC	2 cut(s)	532, 866
CseI	GACGC	2 cut(s)	14, 818
CviAII	CATG	2 cut(s)	370, 858
DdeI	CTNAG	4 cut(s)	112, 487, 901, 1087
DpnI	GATC	3 cut(s)	249, 351, 476
DpnII	GATC	3 cut(s)	247, 349, 474
DriI	GACNNNNNGTC	1 cut(s)	828
Eam1104I	CTCTTC	2 cut(s)	150, 636
Eam1105I	GACNNNNNGTC	1 cut(s)	828
EarI	CTCTTC	2 cut(s)	150, 636
Eco32I	GATATC	1 cut(s)	882
Eco47I	GGWCC	1 cut(s)	866
Eco57I	CTGAAG	4 cut(s)	345, 369, 741, 773
Eco88I	CYCGRG	1 cut(s)	726
EcoRI	GAATTC	1 cut(s)	123
EcoRV	GATATC	1 cut(s)	882
FaeI	CATG	2 cut(s)	373, 861
FatI	CATG	2 cut(s)	369, 857
FblI	GTMKAC	1 cut(s)	132
FokI	GGATG	8 cut(s)	209, 293, 326, 350, 388, 556, 749, 770
FspBI	CTAG	3 cut(s)	411, 578, 1058
FspI	TGCGCA	1 cut(s)	288
GlaI	GCGC	2 cut(s)	288, 1056
HaeIII	GGCC	3 cut(s)	344, 534, 995
HapII	CCGG	1 cut(s)	992
HgaI	GACGC	2 cut(s)	14, 818
HhaI	GCGC	2 cut(s)	289, 1057
Hin1II	CATG	2 cut(s)	373, 861
Hin6I	GCGC	2 cut(s)	287, 1055
HinP1I	GCGC	2 cut(s)	287, 1055
HindIII	AAGCTT	2 cut(s)	109, 898
HinfI	GANTC	4 cut(s)	179, 227, 376, 485
HpaII	CCGG	1 cut(s)	992
Hpy166II	GTNNAC	2 cut(s)	133, 791
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	4 cut(s)	405, 452, 728, 931
Hpy8I	GTNNAC	2 cut(s)	133, 791
HpyAV	CCTTC	5 cut(s)	77, 87, 320, 748, 1060
HpyCH4III	ACNGT	1 cut(s)	666
HpyCH4IV	ACGT	1 cut(s)	700
HpyCH4V	TGCA	8 cut(s)	277, 464, 670, 836, 950, 968, 1073, 1082
HpyF3I	CTNAG	4 cut(s)	112, 487, 901, 1087
HpySE526I	ACGT	1 cut(s)	700
Hsp92II	CATG	2 cut(s)	373, 861
HspAI	GCGC	2 cut(s)	287, 1055
Kzo9I	GATC	3 cut(s)	247, 349, 474
LguI	GCTCTTC	1 cut(s)	636
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	8 cut(s)	271, 476, 560, 794, 799, 952, 962, 1039
LweI	GCATC	9 cut(s)	190, 271, 304, 410, 445, 578, 655, 727, 937
MaeI	CTAG	3 cut(s)	411, 578, 1058
MaeII	ACGT	1 cut(s)	700
MaeIII	GTNAC	2 cut(s)	262, 554
MalI	GATC	3 cut(s)	249, 351, 476
MboI	GATC	3 cut(s)	247, 349, 474
MboII	GAAGA	5 cut(s)	82, 167, 281, 554, 653
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	6 cut(s)	123, 299, 425, 447, 636, 936
MlyI	GAGTC	2 cut(s)	188, 479
MmeI	TCCRAC	2 cut(s)	174, 404
MnlI	CCTC	6 cut(s)	334, 503, 583, 705, 826, 851
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	1 cut(s)	609
MspI	CCGG	1 cut(s)	992
Mva1269I	GAATGC	1 cut(s)	814
MvnI	CGCG	1 cut(s)	829
NdeII	GATC	3 cut(s)	247, 349, 474
NlaIII	CATG	2 cut(s)	373, 861
NlaIV	GGNNCC	2 cut(s)	216, 514
NmuCI	GTSAC	1 cut(s)	554
NsbI	TGCGCA	1 cut(s)	288
PaeR7I	CTCGAG	1 cut(s)	726
PciSI	GCTCTTC	1 cut(s)	636
PctI	GAATGC	1 cut(s)	814
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	227, 376
PleI	GAGTC	2 cut(s)	187, 479
PpsI	GAGTC	2 cut(s)	187, 479
PspN4I	GGNNCC	2 cut(s)	216, 514
PspPI	GGNCC	2 cut(s)	532, 866
PsuI	RGATCY	1 cut(s)	247
SapI	GCTCTTC	1 cut(s)	636
SaqAI	TTAA	1 cut(s)	609
Sau3AI	GATC	3 cut(s)	247, 349, 474
Sau96I	GGNCC	2 cut(s)	532, 866
SchI	GAGTC	2 cut(s)	188, 479
SduI	GDGCHC	1 cut(s)	121
SfaNI	GCATC	9 cut(s)	190, 271, 304, 410, 445, 578, 655, 727, 937
SfcI	CTRYAG	1 cut(s)	468
Sfr274I	CTCGAG	1 cut(s)	726
SinI	GGWCC	1 cut(s)	866
SlaI	CTCGAG	1 cut(s)	726
SmlI	CTYRAG	3 cut(s)	47, 726, 794
SmoI	CTYRAG	3 cut(s)	47, 726, 794
Sse9I	AATT	6 cut(s)	123, 299, 425, 447, 636, 936
SsiI	CCGC	2 cut(s)	443, 516
SspMI	CTAG	3 cut(s)	411, 578, 1058
TaaI	ACNGT	1 cut(s)	666
TaiI	ACGT	1 cut(s)	703
TaqI	TCGA	2 cut(s)	121, 727
TasI	AATT	6 cut(s)	123, 299, 425, 447, 636, 936
TauI	GCSGC	1 cut(s)	446
TfiI	GAWTC	2 cut(s)	227, 376
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TscAI	CASTG	4 cut(s)	542, 609, 793, 991
TseFI	GTSAC	1 cut(s)	554
TseI	GCWGC	9 cut(s)	8, 284, 464, 548, 782, 812, 950, 965, 1052
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	2 cut(s)	25, 701
TspRI	CASTG	4 cut(s)	542, 609, 793, 991
VpaK11BI	GGWCC	1 cut(s)	866
XapI	RAATTY	1 cut(s)	123
XhoI	CTCGAG	1 cut(s)	726
XmiI	GTMKAC	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	3 cut(s)	411, 578, 1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.