Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006594

Physical Location & Seq

Genomic Coordinates Reverse (-)

17827500 .. 17831697

Gene Structure 4198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G235200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGATGCTGCAAAGGTAGCAGAACTGAGGGAGTTCGTTAGTAAGTGCAAGTCAAACCCTTCACTGATCCATACCCCTTCTCTTGCCTTCTTCAAGTCCTATCTCCAAAGCCTTGGCGCTCGAATTCCGCCGATCCCAAAAATGGATAAAGTTGATGTGGACATGTCAGACACTAAAGATCATTTTGATGCCAAAAGACCTGATCCATCCCGGGATAATGATGAGGATATTGTTGAGTCCGATATCGAGTTGGATGCTACTGATGTTGTGGAGCCTGATAATGATCCTCCACAGAAGATGGGAAACCCATCGGTCGAAGTTACAGAAGAAATGCAGGATGCTGCACAAATAGAAAAATCAAAAGCTTTAGATGCCATCTCTGAAGGGAAGCTGGATGAAGCCATAGATCATATAACAGAAGCCATCATGTTGAATCCAACTTCAGCAATATTAAAAGCAACCAGAGCTAGTGTCTTTGTCAAATTGAATAAACCAAATGCAGCAATTCGTGATGCTAATGCAGCTTTAGAGATCAACCCCGACTCTGCAAAAGGATATAAAATAAGAGGAATGGCGAAGGCCATGTTAGGTCACTGGGAAGAAGCGGCAAGTGATCTTCATGTAGCATCAAAGTTAGATTATGATGAGGAGATTGGTTTGGTGCTTAAAAAGGTTGGACCTAATGTCCGCAGAATTGAGGAGCATCGCAGAAAATATGAACGCTTACATAAAGAAAGGGAGATAAAAAGTGCTGAACGTGAAAGAAAGCGGCAAGCCGAAGCTCGAGAACGGGATGCGTTGTCTGCTCTTAAGGATGGTGAAGTCATTGGTATACACTCAGCCAAAGAACTGGAGACAAAGTTGAATGCTGCTTCAAGGACATTGCGGCTTGCAATCCTCTACTTCACCGCAACATGGTGTGGTCCTTGCCGTTTCATATCTCCTTTGTATACAACCTTAGCTGGACAGTACCCAAAGGCCGTTTTCTTGAAAGTTGACATAGATGAGGCAAGAGATGTTGCTGCAAACTGGAACATAAGCAGTGTTCCGGCATTTTTCTTTGTAAGAAATGGTAAGGAGGTTGACAAGATGGTGGGGGCAGACAAAACTGCACTAGAAGGGAAGATTGCACAACATGCAGGCTCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006457 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016043 GO:0016491 GO:0016667 GO:0016671 GO:0022607 GO:0030544 GO:0031072 GO:0042802 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0055114 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

384

Amino Acids

42.53

Weight (kDa)

5.73

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17880 AT3G17880
fragaria_vesca	FvH4_5g17540 FvH4_5g17540 FvH4_5g17540 FvH4_5g17540
malus_domestica	MD06G1228800.v1.1 MD14G1238000.v1.1
prunus_persica	Prupe.2G018600_v2.0.a1 Prupe.2G018600_v2.0.a1 Prupe.2G018600_v2.0.a1 Prupe.2G018700_v2.0.a1 Prupe.5G235200_v2.0.a1
pyrus_communis	pycom06g20510 pycom14g19910
rosa_chinensis	RchiOBHm_Chr7g0178111
rosa_laevigata	RLG00000005470
rosa_multiflora	Rmu_sc0000425.1_g000010
rosa_roxburghii	Rroxscaffold_3G00275170
rosa_rugosa	Rorug06G0413500 Rorug06G0413600
rosa_samantha	Rh7AG012900 Rh7BG012800 Rh7CG012800 Rh7DG013100
rosa_wichuraiana	Rw7G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	832, 950
AciI	CCGC	6 cut(s)	128, 605, 688, 769, 886, 909
AclWI	GGATC	4 cut(s)	61, 127, 197, 278
AcsI	RAATTY	1 cut(s)	123
AcuI	CTGAAG	2 cut(s)	402, 426
AfaI	GTAC	1 cut(s)	971
AfiI	CCNNNNNNNGG	2 cut(s)	142, 915
AflII	CTTAAG	1 cut(s)	809
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	6 cut(s)	94, 433, 487, 865, 876, 991
AhdI	GACNNNNNGTC	1 cut(s)	683
AluBI	AGCT	6 cut(s)	365, 391, 467, 524, 782, 962
AluI	AGCT	6 cut(s)	365, 391, 467, 524, 782, 962
Alw26I	GTCTC	1 cut(s)	848
AlwI	GGATC	4 cut(s)	61, 127, 197, 278
Ama87I	CYCGRG	2 cut(s)	210, 783
AoxI	GGCC	2 cut(s)	579, 978
ApeKI	GCWGC	6 cut(s)	8, 341, 500, 521, 869, 1022
ApoI	RAATTY	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	2 cut(s)	677, 923
AsuC2I	CCSGG	2 cut(s)	211, 212
AsuHPI	GGTGA	2 cut(s)	830, 898
AvaI	CYCGRG	2 cut(s)	210, 783
AvaII	GGWCC	2 cut(s)	677, 923
BbvI	GCAGC	5 cut(s)	328, 512, 533, 856, 1009
BccI	CCATC	7 cut(s)	214, 292, 316, 383, 431, 809, 1084
BceAI	ACGGC	2 cut(s)	915, 965
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BcnI	CCSGG	2 cut(s)	211, 212
BcoDI	GTCTC	1 cut(s)	848
BfaI	CTAG	2 cut(s)	468, 1115
BfoI	RGCGCY	1 cut(s)	120
BfrI	CTTAAG	1 cut(s)	809
BisI	GCNGC	9 cut(s)	9, 342, 501, 522, 606, 770, 870, 887, 1023
BlsI	GCNGC	9 cut(s)	10, 343, 502, 523, 607, 771, 871, 888, 1024
Bme1390I	CCNGG	2 cut(s)	211, 212
Bme18I	GGWCC	2 cut(s)	677, 923
BmeRI	GACNNNNNGTC	1 cut(s)	683
BmeT110I	CYCGRG	2 cut(s)	210, 783
BmgT120I	GGNCC	2 cut(s)	677, 923
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	2 cut(s)	211, 212
BmrI	ACTGGG	1 cut(s)	604
BmsI	GCATC	8 cut(s)	178, 244, 328, 361, 502, 635, 712, 784
BmuI	ACTGGG	1 cut(s)	604
BpmI	CTGGAG	1 cut(s)	872
Bpu10I	CCTNAGC	1 cut(s)	958
BpuMI	CCSGG	2 cut(s)	211, 212
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	112, 210
BsaXI	ACNNNNNCTCC	2 cut(s)	845, 875
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 915
Bse1I	ACTGG	3 cut(s)	599, 855, 1034
Bse3DI	GCAATG	1 cut(s)	881
Bse8I	GATNNNNATC	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	112, 210
BseGI	GGATG	7 cut(s)	10, 206, 259, 343, 400, 799, 820
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	2 cut(s)	142, 915
BseMI	GCAATG	1 cut(s)	881
BseMII	CTCAG	2 cut(s)	17, 852
BseNI	ACTGG	3 cut(s)	599, 855, 1034
BseRI	GAGGAG	2 cut(s)	662, 713
BseXI	GCAGC	5 cut(s)	328, 512, 533, 856, 1009
BsgI	GTGCAG	2 cut(s)	327, 1095
Bsh1285I	CGRYCG	1 cut(s)	315
BshFI	GGCC	2 cut(s)	581, 980
BsiEI	CGRYCG	1 cut(s)	315
BsiHKCI	CYCGRG	2 cut(s)	210, 783
BsiSI	CCGG	2 cut(s)	211, 1049
BslI	CCNNNNNNNGG	2 cut(s)	142, 915
BsmAI	GTCTC	1 cut(s)	848
BsmI	GAATGC	1 cut(s)	871
BsnI	GGCC	2 cut(s)	581, 980
BsoBI	CYCGRG	2 cut(s)	210, 783
Bsp143I	GATC	8 cut(s)	66, 132, 178, 202, 283, 406, 531, 613
BspACI	CCGC	6 cut(s)	128, 605, 688, 769, 886, 909
BspANI	GGCC	2 cut(s)	581, 980
BspCNI	CTCAG	2 cut(s)	18, 851
BspLI	GGNNCC	1 cut(s)	273
BspPI	GGATC	4 cut(s)	61, 127, 197, 278
BspTI	CTTAAG	1 cut(s)	809
BsrDI	GCAATG	1 cut(s)	881
BsrI	ACTGG	3 cut(s)	599, 855, 1034
BssECI	CCNNGG	2 cut(s)	112, 210
BssMI	GATC	8 cut(s)	66, 132, 178, 202, 283, 406, 531, 613
BssNAI	GTATAC	2 cut(s)	833, 951
BssT1I	CCWWGG	1 cut(s)	112
Bst1107I	GTATAC	2 cut(s)	833, 951
Bst4CI	ACNGT	1 cut(s)	969
BstAFI	CTTAAG	1 cut(s)	809
BstAPI	GCANNNNNTGC	1 cut(s)	1136
BstC8I	GCNNGC	3 cut(s)	774, 891, 1141
BstDEI	CTNAG	3 cut(s)	26, 838, 958
BstF5I	GGATG	7 cut(s)	10, 206, 259, 343, 400, 799, 820
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	8 cut(s)	69, 135, 181, 205, 286, 409, 534, 616
BstMAI	GTCTC	1 cut(s)	848
BstMBI	GATC	8 cut(s)	66, 132, 178, 202, 283, 406, 531, 613
BstMCI	CGRYCG	1 cut(s)	315
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 371, 464, 521, 803, 1136
BstNSI	RCATGY	2 cut(s)	166, 1139
BstSCI	CCNGG	2 cut(s)	209, 210
BstV1I	GCAGC	5 cut(s)	328, 512, 533, 856, 1009
BstXI	CCANNNNNNTGG	2 cut(s)	113, 850
BstZ17I	GTATAC	2 cut(s)	833, 951
BsuRI	GGCC	2 cut(s)	581, 980
BtgZI	GCGATG	1 cut(s)	689
BtsCI	GGATG	7 cut(s)	10, 206, 259, 343, 400, 799, 820
BtsI	GCAGTG	1 cut(s)	1048
BtsIMutI	CAGTG	3 cut(s)	62, 592, 1048
Cac8I	GCNNGC	3 cut(s)	774, 891, 1141
CfoI	GCGC	1 cut(s)	119
Cfr13I	GGNCC	2 cut(s)	677, 923
Cfr9I	CCCGGG	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	970
CviAII	CATG	6 cut(s)	163, 427, 583, 620, 915, 1136
CviQI	GTAC	1 cut(s)	970
DdeI	CTNAG	3 cut(s)	26, 838, 958
DpnI	GATC	8 cut(s)	68, 134, 180, 204, 285, 408, 533, 615
DpnII	GATC	8 cut(s)	66, 132, 178, 202, 283, 406, 531, 613
DriI	GACNNNNNGTC	1 cut(s)	683
Eam1105I	GACNNNNNGTC	1 cut(s)	683
EciI	GGCGGA	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	112
Eco32I	GATATC	1 cut(s)	244
Eco47I	GGWCC	2 cut(s)	677, 923
Eco57I	CTGAAG	2 cut(s)	402, 426
Eco88I	CYCGRG	2 cut(s)	210, 783
EcoRI	GAATTC	1 cut(s)	123
EcoRV	GATATC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	6 cut(s)	166, 430, 586, 623, 918, 1139
FatI	CATG	6 cut(s)	162, 426, 582, 619, 914, 1135
FblI	GTMKAC	2 cut(s)	832, 950
Fnu4HI	GCNGC	9 cut(s)	9, 342, 501, 522, 606, 770, 870, 887, 1023
FokI	GGATG	7 cut(s)	17, 193, 266, 350, 407, 806, 827
Fsp4HI	GCNGC	9 cut(s)	9, 342, 501, 522, 606, 770, 870, 887, 1023
FspBI	CTAG	2 cut(s)	468, 1115
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	9 cut(s)	9, 342, 501, 522, 606, 770, 870, 887, 1023
GsuI	CTGGAG	1 cut(s)	872
HaeII	RGCGCY	1 cut(s)	120
HaeIII	GGCC	2 cut(s)	581, 980
HapII	CCGG	2 cut(s)	211, 1049
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	6 cut(s)	166, 430, 586, 623, 918, 1139
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HincII	GTYRAC	2 cut(s)	997, 1084
HindII	GTYRAC	2 cut(s)	997, 1084
HindIII	AAGCTT	1 cut(s)	363
HinfI	GANTC	3 cut(s)	236, 433, 542
HpaII	CCGG	2 cut(s)	211, 1049
HphI	GGTGA	2 cut(s)	830, 898
Hpy166II	GTNNAC	5 cut(s)	160, 833, 951, 997, 1084
Hpy188I	TCNGA	3 cut(s)	169, 241, 382
Hpy188III	TCNNGA	3 cut(s)	509, 785, 988
Hpy8I	GTNNAC	5 cut(s)	160, 833, 951, 997, 1084
HpyAV	CCTTC	6 cut(s)	69, 87, 97, 377, 571, 1112
HpyCH4III	ACNGT	1 cut(s)	969
HpyCH4IV	ACGT	1 cut(s)	757
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 371, 464, 521, 803, 1136
HpyF3I	CTNAG	3 cut(s)	26, 838, 958
HpySE526I	ACGT	1 cut(s)	757
Hsp92II	CATG	6 cut(s)	166, 430, 586, 623, 918, 1139
HspAI	GCGC	1 cut(s)	117
Kzo9I	GATC	8 cut(s)	66, 132, 178, 202, 283, 406, 531, 613
LmnI	GCTCC	2 cut(s)	271, 700
Lsp1109I	GCAGC	5 cut(s)	328, 512, 533, 856, 1009
LweI	GCATC	8 cut(s)	178, 244, 328, 361, 502, 635, 712, 784
MaeI	CTAG	2 cut(s)	468, 1115
MaeII	ACGT	1 cut(s)	757
MaeIII	GTNAC	2 cut(s)	319, 590
MalI	GATC	8 cut(s)	68, 134, 180, 204, 285, 408, 533, 615
MboI	GATC	8 cut(s)	66, 132, 178, 202, 283, 406, 531, 613
MboII	GAAGA	6 cut(s)	82, 307, 338, 608, 611, 1135
MluCI	AATT	5 cut(s)	123, 482, 504, 693, 1146
MlyI	GAGTC	2 cut(s)	245, 536
MmeI	TCCRAC	3 cut(s)	231, 461, 655
MnlI	CCTC	9 cut(s)	21, 217, 297, 560, 640, 691, 908, 1000, 1072
MseI	TTAA	3 cut(s)	452, 666, 810
MslI	CAYNNNNRTG	1 cut(s)	186
MspCI	CTTAAG	1 cut(s)	809
MspI	CCGG	2 cut(s)	211, 1049
MspR9I	CCNGG	2 cut(s)	211, 212
Mva1269I	GAATGC	1 cut(s)	871
MwoI	GCNNNNNNNGC	6 cut(s)	17, 371, 464, 521, 803, 1136
NciI	CCSGG	2 cut(s)	211, 212
NdeII	GATC	8 cut(s)	66, 132, 178, 202, 283, 406, 531, 613
NlaIII	CATG	6 cut(s)	166, 430, 586, 623, 918, 1139
NlaIV	GGNNCC	1 cut(s)	273
NmuCI	GTSAC	1 cut(s)	590
NspI	RCATGY	2 cut(s)	166, 1139
PaeR7I	CTCGAG	1 cut(s)	783
PciI	ACATGT	1 cut(s)	162
PctI	GAATGC	1 cut(s)	871
PfeI	GAWTC	1 cut(s)	433
PkrI	GCNGC	9 cut(s)	10, 343, 502, 523, 607, 771, 871, 888, 1024
PleI	GAGTC	2 cut(s)	244, 536
PpsI	GAGTC	2 cut(s)	244, 536
PscI	ACATGT	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	2 cut(s)	677, 923
RsaI	GTAC	1 cut(s)	971
RsaNI	GTAC	1 cut(s)	970
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	3 cut(s)	452, 666, 810
SatI	GCNGC	9 cut(s)	9, 342, 501, 522, 606, 770, 870, 887, 1023
Sau3AI	GATC	8 cut(s)	66, 132, 178, 202, 283, 406, 531, 613
Sau96I	GGNCC	2 cut(s)	677, 923
SchI	GAGTC	2 cut(s)	245, 536
ScrFI	CCNGG	2 cut(s)	211, 212
SfaNI	GCATC	8 cut(s)	178, 244, 328, 361, 502, 635, 712, 784
Sfr274I	CTCGAG	1 cut(s)	783
SinI	GGWCC	2 cut(s)	677, 923
SlaI	CTCGAG	1 cut(s)	783
SmaI	CCCGGG	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	2 cut(s)	783, 809
SmoI	CTYRAG	2 cut(s)	783, 809
Sse9I	AATT	5 cut(s)	123, 482, 504, 693, 1146
SsiI	CCGC	6 cut(s)	128, 605, 688, 769, 886, 909
SspI	AATATT	1 cut(s)	450
SspMI	CTAG	2 cut(s)	468, 1115
StyD4I	CCNGG	2 cut(s)	209, 210
StyI	CCWWGG	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	969
TaiI	ACGT	1 cut(s)	760
TaqI	TCGA	4 cut(s)	121, 246, 315, 784
TaqII	GACCGA	1 cut(s)	301
TasI	AATT	5 cut(s)	123, 482, 504, 693, 1146
TauI	GCSGC	3 cut(s)	608, 772, 889
TfiI	GAWTC	1 cut(s)	433
Tru1I	TTAA	3 cut(s)	452, 666, 810
Tru9I	TTAA	3 cut(s)	452, 666, 810
TscAI	CASTG	3 cut(s)	69, 599, 1048
TseFI	GTSAC	1 cut(s)	590
TseI	GCWGC	6 cut(s)	8, 341, 500, 521, 869, 1022
Tsp45I	GTSAC	1 cut(s)	590
TspDTI	ATGAA	4 cut(s)	411, 608, 732, 925
TspMI	CCCGGG	1 cut(s)	210
TspRI	CASTG	3 cut(s)	69, 599, 1048
Vha464I	CTTAAG	1 cut(s)	809
VpaK11BI	GGWCC	2 cut(s)	677, 923
XapI	RAATTY	1 cut(s)	123
XceI	RCATGY	2 cut(s)	166, 1139
XhoI	CTCGAG	1 cut(s)	783
XmaI	CCCGGG	1 cut(s)	210
XmiI	GTMKAC	2 cut(s)	832, 950
XspI	CTAG	2 cut(s)	468, 1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.