Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006594

Physical Location & Seq

Genomic Coordinates Forward (+)

987407 .. 990016

Gene Structure 2610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG012800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGGAGACCCATCAGTTGAAGTTACAGAAGAAATGCAGGATGCTGCGCAATTGGCGAAATCGAGAGCTATGGATGCTGTTTCTGAAGGTAAACCGGATCAGGCCATAGATCATATAACAGAGGCCATCATGTTGAATCCAACTTCAGCCATACTAAAAGCATCCAGAGCTAGTATCTTTGTCAAATTGAACAAACCAAATGCAGCAATTCGTGATGCTAATGCAGCTATAGAGATCAACCCAGACTCAGCAAAAGGATATAAAATAAGAGGAACTGCAAAGGCTATGTTGGGCCACTGGGAAGAAGCAGCAAGTGACCTGCATATAGCATCCAAACTAGATTATGATGAGGAGATTGGTTTGGTGCTTAAAAAGGTTGAACCTAATGCTCGAAAAATTGAAGAGCATCGCAAAAAATATCAACGGTTGCATAAAGAAAGGGAGATGAAAAGGGCTGAACATGAGAGACAGAGGCAAGCTGAAGCTCGAGAACGGGATGCTTTGTCTGCTCTTAAGGATGGGCAAGTTATTGGTATACATGCGGCCAGTGAACTTGAGACGAAATTGAATGCTGCTTCAAGGACATCGCGCCTTGCAATCCTGTACTTCACCGCGACATGGTGTGGTCCTTGCCGTATAATATCTCCACTATATACAAGCTTAGCTGAAAAGTACCCAAAAGTAGTTTTCACGAAAATTGACATAGATGCGGCAAGAGATGTGGCTGCCAGCTGGAATATCAGCAGTGTTCCAGCCTTTTTCTTTGTAAGAAATGGCAAGGAGATTGACAAGGTTGTGGGTGCTGATAAAGCTGCGCTAGAAAAGAAGATTGCACAACATGCAGCCTCAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006457 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016043 GO:0016491 GO:0016667 GO:0016671 GO:0022607 GO:0030544 GO:0031072 GO:0042802 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0055114 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

284

Amino Acids

31.34

Weight (kDa)

8.66

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	195 - 278	2.3e-23	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17880 AT3G17880
fragaria_vesca	FvH4_5g17540 FvH4_5g17540 FvH4_5g17540 FvH4_5g17540
malus_domestica	MD06G1228800.v1.1 MD14G1238000.v1.1
prunus_persica	Prupe.2G018600_v2.0.a1 Prupe.2G018600_v2.0.a1 Prupe.2G018600_v2.0.a1 Prupe.2G018700_v2.0.a1 Prupe.5G235200_v2.0.a1
pyrus_communis	pycom06g20510 pycom14g19910
rosa_chinensis	RchiOBHm_Chr7g0178111
rosa_laevigata	RLG00000005470
rosa_multiflora	Rmu_sc0000425.1_g000010
rosa_roxburghii	Rroxscaffold_3G00275170
rosa_rugosa	Rorug06G0413500 Rorug06G0413600
rosa_samantha	Rh7AG012900 Rh7BG012800 Rh7CG012800 Rh7DG013100
rosa_wichuraiana	Rw7G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	48
Acc36I	ACCTGC	1 cut(s)	327
AccI	GTMKAC	1 cut(s)	535
AccII	CGCG	2 cut(s)	589, 614
AciI	CCGC	3 cut(s)	542, 612, 710
AclWI	GGATC	1 cut(s)	105
AcoI	YGGCCR	1 cut(s)	543
AcuI	CTGAAG	3 cut(s)	105, 129, 501
AfaI	GTAC	2 cut(s)	605, 674
AfiI	CCNNNNNNNGG	1 cut(s)	618
AflII	CTTAAG	1 cut(s)	512
AgsI	TTSAA	7 cut(s)	20, 136, 190, 380, 401, 568, 579
AluBI	AGCT	9 cut(s)	68, 170, 227, 479, 485, 660, 665, 732, 812
AluI	AGCT	9 cut(s)	68, 170, 227, 479, 485, 660, 665, 732, 812
Alw26I	GTCTC	2 cut(s)	460, 551
AlwI	GGATC	1 cut(s)	105
Ama87I	CYCGRG	1 cut(s)	486
AoxI	GGCC	4 cut(s)	102, 123, 292, 543
ApeKI	GCWGC	8 cut(s)	44, 203, 224, 308, 572, 725, 812, 842
AspLEI	GCGC	3 cut(s)	49, 591, 817
AspS9I	GGNCC	2 cut(s)	292, 626
AsuHPI	GGTGA	1 cut(s)	601
AvaI	CYCGRG	1 cut(s)	486
AvaII	GGWCC	1 cut(s)	626
BbvCI	CCTCAGC	1 cut(s)	847
BbvI	GCAGC	7 cut(s)	31, 215, 236, 320, 559, 712, 799
BccI	CCATC	3 cut(s)	19, 134, 512
BceAI	ACGGC	1 cut(s)	618
BcoDI	GTCTC	2 cut(s)	460, 551
BfaI	CTAG	3 cut(s)	171, 338, 818
BfmI	CTRYAG	1 cut(s)	228
BfrI	CTTAAG	1 cut(s)	512
BfuAI	ACCTGC	1 cut(s)	327
BlpI	GCTNAGC	1 cut(s)	661
Bme18I	GGWCC	1 cut(s)	626
BmeT110I	CYCGRG	1 cut(s)	486
BmgT120I	GGNCC	2 cut(s)	292, 626
BmrI	ACTGGG	1 cut(s)	307
BmsI	GCATC	8 cut(s)	31, 64, 170, 205, 338, 415, 487, 697
BmuI	ACTGGG	1 cut(s)	307
Bpu10I	CCTNAGC	1 cut(s)	847
Bpu1102I	GCTNAGC	1 cut(s)	661
BpuEI	CTTGAG	1 cut(s)	575
BsaWI	WCCGGW	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	1 cut(s)	618
Bse1I	ACTGG	2 cut(s)	302, 546
BseGI	GGATG	6 cut(s)	46, 79, 161, 329, 502, 523
BseLI	CCNNNNNNNGG	1 cut(s)	618
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	2 cut(s)	302, 546
BseRI	GAGGAG	1 cut(s)	365
BseXI	GCAGC	7 cut(s)	31, 215, 236, 320, 559, 712, 799
Bsh1236I	CGCG	2 cut(s)	589, 614
BshFI	GGCC	4 cut(s)	104, 125, 294, 545
BsiHKCI	CYCGRG	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	618
BsmAI	GTCTC	2 cut(s)	460, 551
BsmBI	CGTCTC	1 cut(s)	551
BsmI	GAATGC	1 cut(s)	574
BsnI	GGCC	4 cut(s)	104, 125, 294, 545
BsoBI	CYCGRG	1 cut(s)	486
Bsp143I	GATC	3 cut(s)	97, 109, 234
Bsp1720I	GCTNAGC	1 cut(s)	661
BspACI	CCGC	3 cut(s)	542, 612, 710
BspANI	GGCC	4 cut(s)	104, 125, 294, 545
BspCNI	CTCAG	1 cut(s)	260
BspFNI	CGCG	2 cut(s)	589, 614
BspMI	ACCTGC	1 cut(s)	327
BspPI	GGATC	1 cut(s)	105
BspQI	GCTCTTC	1 cut(s)	396
BspTI	CTTAAG	1 cut(s)	512
BsrI	ACTGG	2 cut(s)	302, 546
BssMI	GATC	3 cut(s)	97, 109, 234
BssNAI	GTATAC	1 cut(s)	536
Bst1107I	GTATAC	1 cut(s)	536
Bst4CI	ACNGT	1 cut(s)	426
Bst6I	CTCTTC	1 cut(s)	396
BstAFI	CTTAAG	1 cut(s)	512
BstAPI	GCANNNNNTGC	1 cut(s)	839
BstC8I	GCNNGC	2 cut(s)	477, 730
BstDEI	CTNAG	3 cut(s)	247, 661, 847
BstF5I	GGATG	6 cut(s)	46, 79, 161, 329, 502, 523
BstFNI	CGCG	2 cut(s)	589, 614
BstHHI	GCGC	3 cut(s)	49, 591, 817
BstKTI	GATC	3 cut(s)	100, 112, 237
BstMAI	GTCTC	2 cut(s)	460, 551
BstMBI	GATC	3 cut(s)	97, 109, 234
BstMWI	GCNNNNNNNGC	8 cut(s)	53, 74, 167, 224, 506, 809, 839, 848
BstNSI	RCATGY	2 cut(s)	542, 842
BstSFI	CTRYAG	1 cut(s)	228
BstUI	CGCG	2 cut(s)	589, 614
BstV1I	GCAGC	7 cut(s)	31, 215, 236, 320, 559, 712, 799
BstZ17I	GTATAC	1 cut(s)	536
BsuRI	GGCC	4 cut(s)	104, 125, 294, 545
BtgZI	GCGATG	2 cut(s)	392, 570
BtsCI	GGATG	6 cut(s)	46, 79, 161, 329, 502, 523
BtsI	GCAGTG	1 cut(s)	751
BtsIMutI	CAGTG	3 cut(s)	295, 553, 751
BveI	ACCTGC	1 cut(s)	327
Cac8I	GCNNGC	2 cut(s)	477, 730
CfoI	GCGC	3 cut(s)	49, 591, 817
Cfr13I	GGNCC	2 cut(s)	292, 626
Csp6I	GTAC	2 cut(s)	604, 673
CspCI	CAANNNNNGTGG	2 cut(s)	702, 737
CviAII	CATG	5 cut(s)	130, 461, 539, 618, 839
CviQI	GTAC	2 cut(s)	604, 673
DdeI	CTNAG	3 cut(s)	247, 661, 847
DpnI	GATC	3 cut(s)	99, 111, 236
DpnII	GATC	3 cut(s)	97, 109, 234
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	626
Eco57I	CTGAAG	3 cut(s)	105, 129, 501
Eco88I	CYCGRG	1 cut(s)	486
Esp3I	CGTCTC	1 cut(s)	551
FaeI	CATG	5 cut(s)	133, 464, 542, 621, 842
FatI	CATG	5 cut(s)	129, 460, 538, 617, 838
FblI	GTMKAC	1 cut(s)	535
FokI	GGATG	6 cut(s)	53, 86, 148, 316, 509, 530
FspBI	CTAG	3 cut(s)	171, 338, 818
FspI	TGCGCA	1 cut(s)	48
GlaI	GCGC	3 cut(s)	48, 590, 816
HaeIII	GGCC	4 cut(s)	104, 125, 294, 545
HapII	CCGG	1 cut(s)	95
HhaI	GCGC	3 cut(s)	49, 591, 817
Hin1II	CATG	5 cut(s)	133, 464, 542, 621, 842
Hin6I	GCGC	3 cut(s)	47, 589, 815
HinP1I	GCGC	3 cut(s)	47, 589, 815
HindIII	AAGCTT	1 cut(s)	658
HinfI	GANTC	2 cut(s)	136, 245
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	1 cut(s)	601
Hpy166II	GTNNAC	3 cut(s)	92, 536, 551
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	5 cut(s)	63, 165, 212, 488, 691
Hpy8I	GTNNAC	3 cut(s)	92, 536, 551
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	426
HpyCH4V	TGCA	9 cut(s)	37, 203, 224, 278, 322, 430, 596, 833, 842
HpyF10VI	GCNNNNNNNGC	8 cut(s)	53, 74, 167, 224, 506, 809, 839, 848
HpyF3I	CTNAG	3 cut(s)	247, 661, 847
Hsp92II	CATG	5 cut(s)	133, 464, 542, 621, 842
HspAI	GCGC	3 cut(s)	47, 589, 815
Kzo9I	GATC	3 cut(s)	97, 109, 234
LguI	GCTCTTC	1 cut(s)	396
Lsp1109I	GCAGC	7 cut(s)	31, 215, 236, 320, 559, 712, 799
LweI	GCATC	8 cut(s)	31, 64, 170, 205, 338, 415, 487, 697
MaeI	CTAG	3 cut(s)	171, 338, 818
MaeIII	GTNAC	2 cut(s)	22, 314
MalI	GATC	3 cut(s)	99, 111, 236
MboI	GATC	3 cut(s)	97, 109, 234
MboII	GAAGA	4 cut(s)	41, 314, 413, 838
MfeI	CAATTG	1 cut(s)	50
MluCI	AATT	6 cut(s)	50, 185, 207, 396, 563, 696
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	164
MnlI	CCTC	4 cut(s)	115, 263, 343, 465
MseI	TTAA	2 cut(s)	369, 513
MspA1I	CMGCKG	1 cut(s)	732
MspCI	CTTAAG	1 cut(s)	512
MspI	CCGG	1 cut(s)	95
MunI	CAATTG	1 cut(s)	50
Mva1269I	GAATGC	1 cut(s)	574
MvnI	CGCG	2 cut(s)	589, 614
MwoI	GCNNNNNNNGC	8 cut(s)	53, 74, 167, 224, 506, 809, 839, 848
NdeII	GATC	3 cut(s)	97, 109, 234
NlaIII	CATG	5 cut(s)	133, 464, 542, 621, 842
NmuCI	GTSAC	1 cut(s)	314
NsbI	TGCGCA	1 cut(s)	48
NspI	RCATGY	2 cut(s)	542, 842
PaeR7I	CTCGAG	1 cut(s)	486
PciSI	GCTCTTC	1 cut(s)	396
PctI	GAATGC	1 cut(s)	574
PfeI	GAWTC	1 cut(s)	136
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PspPI	GGNCC	2 cut(s)	292, 626
PvuII	CAGCTG	1 cut(s)	732
RsaI	GTAC	2 cut(s)	605, 674
RsaNI	GTAC	2 cut(s)	604, 673
SapI	GCTCTTC	1 cut(s)	396
SaqAI	TTAA	2 cut(s)	369, 513
Sau3AI	GATC	3 cut(s)	97, 109, 234
Sau96I	GGNCC	2 cut(s)	292, 626
SchI	GAGTC	1 cut(s)	239
SfaNI	GCATC	8 cut(s)	31, 64, 170, 205, 338, 415, 487, 697
SfcI	CTRYAG	1 cut(s)	228
Sfr274I	CTCGAG	1 cut(s)	486
SinI	GGWCC	1 cut(s)	626
SlaI	CTCGAG	1 cut(s)	486
SmlI	CTYRAG	3 cut(s)	486, 512, 554
SmoI	CTYRAG	3 cut(s)	486, 512, 554
Sse9I	AATT	6 cut(s)	50, 185, 207, 396, 563, 696
SsiI	CCGC	3 cut(s)	542, 612, 710
SspMI	CTAG	3 cut(s)	171, 338, 818
TaaI	ACNGT	1 cut(s)	426
TaqI	TCGA	3 cut(s)	62, 391, 487
TasI	AATT	6 cut(s)	50, 185, 207, 396, 563, 696
TatI	WGTACW	1 cut(s)	603
TauI	GCSGC	2 cut(s)	545, 713
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	2 cut(s)	369, 513
Tru9I	TTAA	2 cut(s)	369, 513
TscAI	CASTG	3 cut(s)	302, 553, 751
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	8 cut(s)	44, 203, 224, 308, 572, 725, 812, 842
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	1 cut(s)	461
TspRI	CASTG	3 cut(s)	302, 553, 751
Vha464I	CTTAAG	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	626
XceI	RCATGY	2 cut(s)	542, 842
XhoI	CTCGAG	1 cut(s)	486
XmiI	GTMKAC	1 cut(s)	535
XspI	CTAG	3 cut(s)	171, 338, 818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.