Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006594

Physical Location & Seq

Genomic Coordinates Reverse (-)

66684282 .. 66686769

Gene Structure 2488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00275170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGATGCTGCCAAAGTAGCCGAACTGAACGAGTTCATCACTAAAGTCAAGTCAAACCCATCAATCCTTCACGACCCTTCTCTTGCTTTCTTCAAGTCCTATCTCCAAAGTCTCGGTGCTCGAATCCCAACAGACCCAAAAATGGAAACTAAAGAACAGTTTGATGATGACATTGTTGAATCTGATATTGAGTTGGATGATGCTGATGTTGTGGAGCCTGATAATGATCCTCCACAACAGATGGGAGACCCATCAGTTGAAGTTACAGAAGAAACGCAGGATGCTGCGCAATTGGCGAAATCGAGAGCTATGGATGCTGTTTCTGAAGGTAAACTGGATGAGGCCATAGATCATATAACGGAAGCCATCATGTTGAATCCAACTTCAGCCATACTAAAAGCATCCAGAGCTAGTATCTTTGTCAAATTGAACAAACCAAATGCGGCAATTCGTGATGCTAATGCAGCTATAGAGATCAACCCAGACTCAGCAAAAGGATATAAAATAAGAGGACACGCAAAGGCTATGTTGGGCCACTGGGAAGAAGCAGCAAGTGACCTGCATATAGCATCCAAACTAGATTATGATGAGGAGATTGGTTTGGTGCTTAAAAAGGTTGAACCTAATGCTCGAAAAATTGAAGAGCATCGCAAAAAATATCAACGGTTGCATAAAGAAAGGGAGATGAAAAGGGCTGAACATGAGAGACAGAGGCAAGCTGAAGCTCGAGAACGGGATGCTTTGTCTGCTCTTAAGGATGGGCAAGTTATTGGAATACATGCGGCCAGTGAACTTGAGACGAAATTGAATGCTGCTTCAAGGACATCGCGCCTTGCAGTCCTGTACTTCACCGCGACATGGTGTGGTCCTTGTCGTATGATATCTCCAGTATATACAAGCTTAGCTGAAAAGTACCCAAAAGTAGTTTTCACAAAAATTGACATCGATGCAGCAAGAGATGTGGCTGCAAGCTGGAATATCAGCAGTGTTCCAGCCTTTTTCTTTGTAAGAAATGGCAAGGAGATTGATAAGGTTGTGGGTGCTGATAAAGCTGCGCTAGAAAAGAAGATTGCACAATATGCAGCCTCAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006457 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016043 GO:0016491 GO:0016667 GO:0016671 GO:0022607 GO:0030544 GO:0031072 GO:0042802 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0055114 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

364

Amino Acids

40.33

Weight (kDa)

5.53

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HipN	PF18253	2 - 43	2.7e-18	Hsp70-interacting protein N N-terminal domain
Thioredoxin	PF00085	275 - 358	2.1e-24	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17880 AT3G17880
fragaria_vesca	FvH4_5g17540 FvH4_5g17540 FvH4_5g17540 FvH4_5g17540
malus_domestica	MD06G1228800.v1.1 MD14G1238000.v1.1
prunus_persica	Prupe.2G018600_v2.0.a1 Prupe.2G018600_v2.0.a1 Prupe.2G018600_v2.0.a1 Prupe.2G018700_v2.0.a1 Prupe.5G235200_v2.0.a1
pyrus_communis	pycom06g20510 pycom14g19910
rosa_chinensis	RchiOBHm_Chr7g0178111
rosa_laevigata	RLG00000005470
rosa_multiflora	Rmu_sc0000425.1_g000010
rosa_roxburghii	Rroxscaffold_3G00275170
rosa_rugosa	Rorug06G0413500 Rorug06G0413600
rosa_samantha	Rh7AG012900 Rh7BG012800 Rh7CG012800 Rh7DG013100
rosa_wichuraiana	Rw7G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	288
Acc36I	ACCTGC	1 cut(s)	567
AccII	CGCG	2 cut(s)	829, 854
AciI	CCGC	3 cut(s)	443, 782, 852
AclWI	GGATC	1 cut(s)	221
AcoI	YGGCCR	1 cut(s)	783
AcuI	CTGAAG	3 cut(s)	345, 369, 741
AfaI	GTAC	2 cut(s)	845, 914
AfiI	CCNNNNNNNGG	2 cut(s)	142, 858
AflII	CTTAAG	1 cut(s)	752
AgsI	TTSAA	9 cut(s)	94, 179, 260, 376, 430, 620, 641, 808, 819
AluBI	AGCT	9 cut(s)	308, 410, 467, 719, 725, 900, 905, 972, 1052
AluI	AGCT	9 cut(s)	308, 410, 467, 719, 725, 900, 905, 972, 1052
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	4 cut(s)	116, 240, 700, 791
AlwI	GGATC	1 cut(s)	221
Ama87I	CYCGRG	1 cut(s)	726
AoxI	GGCC	3 cut(s)	342, 532, 783
ApeKI	GCWGC	9 cut(s)	8, 284, 464, 548, 812, 950, 965, 1052, 1082
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	3 cut(s)	289, 831, 1057
AspS9I	GGNCC	2 cut(s)	532, 866
AsuHPI	GGTGA	1 cut(s)	841
AvaI	CYCGRG	1 cut(s)	726
AvaII	GGWCC	1 cut(s)	866
Bbv12I	GWGCWC	1 cut(s)	121
BbvCI	CCTCAGC	1 cut(s)	1087
BbvI	GCAGC	7 cut(s)	271, 476, 560, 799, 952, 962, 1039
BccI	CCATC	5 cut(s)	67, 235, 259, 374, 752
BcoDI	GTCTC	4 cut(s)	116, 240, 700, 791
BfaI	CTAG	3 cut(s)	411, 578, 1058
BfmI	CTRYAG	1 cut(s)	468
BfrI	CTTAAG	1 cut(s)	752
BfuAI	ACCTGC	1 cut(s)	567
BlpI	GCTNAGC	1 cut(s)	901
Bme18I	GGWCC	1 cut(s)	866
BmeT110I	CYCGRG	1 cut(s)	726
BmgT120I	GGNCC	2 cut(s)	532, 866
BmiI	GGNNCC	1 cut(s)	216
BmrI	ACTGGG	1 cut(s)	547
BmsI	GCATC	9 cut(s)	190, 271, 304, 410, 445, 578, 655, 727, 937
BmuI	ACTGGG	1 cut(s)	547
BpmI	CTGGAG	1 cut(s)	870
Bpu10I	CCTNAGC	1 cut(s)	1087
Bpu1102I	GCTNAGC	1 cut(s)	901
BpuEI	CTTGAG	1 cut(s)	815
Bsa29I	ATCGAT	1 cut(s)	945
BsaBI	GATNNNNATC	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 858
Bse1I	ACTGG	4 cut(s)	339, 542, 786, 887
Bse8I	GATNNNNATC	1 cut(s)	225
BseCI	ATCGAT	1 cut(s)	945
BseGI	GGATG	9 cut(s)	10, 202, 286, 319, 343, 401, 569, 742, 763
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	142, 858
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	4 cut(s)	339, 542, 786, 887
BseRI	GAGGAG	1 cut(s)	605
BseXI	GCAGC	7 cut(s)	271, 476, 560, 799, 952, 962, 1039
Bsh1236I	CGCG	2 cut(s)	829, 854
BshFI	GGCC	3 cut(s)	344, 534, 785
BshVI	ATCGAT	1 cut(s)	945
BsiHKAI	GWGCWC	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	726
BslI	CCNNNNNNNGG	2 cut(s)	142, 858
BsmAI	GTCTC	4 cut(s)	116, 240, 700, 791
BsmBI	CGTCTC	1 cut(s)	791
BsmI	GAATGC	1 cut(s)	814
BsnI	GGCC	3 cut(s)	344, 534, 785
Bso31I	GGTCTC	1 cut(s)	240
BsoBI	CYCGRG	1 cut(s)	726
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	3 cut(s)	226, 349, 474
Bsp1720I	GCTNAGC	1 cut(s)	901
BspACI	CCGC	3 cut(s)	443, 782, 852
BspANI	GGCC	3 cut(s)	344, 534, 785
BspCNI	CTCAG	1 cut(s)	500
BspDI	ATCGAT	1 cut(s)	945
BspFNI	CGCG	2 cut(s)	829, 854
BspLI	GGNNCC	1 cut(s)	216
BspMI	ACCTGC	1 cut(s)	567
BspPI	GGATC	1 cut(s)	221
BspQI	GCTCTTC	1 cut(s)	636
BspTI	CTTAAG	1 cut(s)	752
BspTNI	GGTCTC	1 cut(s)	240
BsrI	ACTGG	4 cut(s)	339, 542, 786, 887
BssMI	GATC	3 cut(s)	226, 349, 474
Bst4CI	ACNGT	2 cut(s)	159, 666
Bst6I	CTCTTC	1 cut(s)	636
BstAFI	CTTAAG	1 cut(s)	752
BstAPI	GCANNNNNTGC	1 cut(s)	1079
BstC8I	GCNNGC	2 cut(s)	717, 970
BstDEI	CTNAG	3 cut(s)	487, 901, 1087
BstF5I	GGATG	9 cut(s)	10, 202, 286, 319, 343, 401, 569, 742, 763
BstFNI	CGCG	2 cut(s)	829, 854
BstHHI	GCGC	3 cut(s)	289, 831, 1057
BstKTI	GATC	3 cut(s)	229, 352, 477
BstMAI	GTCTC	4 cut(s)	116, 240, 700, 791
BstMBI	GATC	3 cut(s)	226, 349, 474
BstMWI	GCNNNNNNNGC	9 cut(s)	17, 293, 314, 407, 464, 746, 1049, 1079, 1088
BstNSI	RCATGY	1 cut(s)	782
BstSFI	CTRYAG	1 cut(s)	468
BstUI	CGCG	2 cut(s)	829, 854
BstV1I	GCAGC	7 cut(s)	271, 476, 560, 799, 952, 962, 1039
Bsu15I	ATCGAT	1 cut(s)	945
BsuRI	GGCC	3 cut(s)	344, 534, 785
BsuTUI	ATCGAT	1 cut(s)	945
BtgZI	GCGATG	2 cut(s)	632, 810
BtsCI	GGATG	9 cut(s)	10, 202, 286, 319, 343, 401, 569, 742, 763
BtsI	GCAGTG	1 cut(s)	991
BtsIMutI	CAGTG	3 cut(s)	535, 793, 991
BveI	ACCTGC	1 cut(s)	567
Cac8I	GCNNGC	2 cut(s)	717, 970
CfoI	GCGC	3 cut(s)	289, 831, 1057
Cfr13I	GGNCC	2 cut(s)	532, 866
ClaI	ATCGAT	1 cut(s)	945
Csp6I	GTAC	2 cut(s)	844, 913
CspCI	CAANNNNNGTGG	2 cut(s)	942, 977
CviAII	CATG	4 cut(s)	370, 701, 779, 858
CviQI	GTAC	2 cut(s)	844, 913
DdeI	CTNAG	3 cut(s)	487, 901, 1087
DpnI	GATC	3 cut(s)	228, 351, 476
DpnII	GATC	3 cut(s)	226, 349, 474
EaeI	YGGCCR	1 cut(s)	783
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
Eco31I	GGTCTC	1 cut(s)	240
Eco32I	GATATC	1 cut(s)	882
Eco47I	GGWCC	1 cut(s)	866
Eco57I	CTGAAG	3 cut(s)	345, 369, 741
Eco88I	CYCGRG	1 cut(s)	726
EcoRV	GATATC	1 cut(s)	882
Esp3I	CGTCTC	1 cut(s)	791
FaeI	CATG	4 cut(s)	373, 704, 782, 861
FatI	CATG	4 cut(s)	369, 700, 778, 857
FokI	GGATG	9 cut(s)	17, 209, 293, 326, 350, 388, 556, 749, 770
FspBI	CTAG	3 cut(s)	411, 578, 1058
FspI	TGCGCA	1 cut(s)	288
GlaI	GCGC	3 cut(s)	288, 830, 1056
GsuI	CTGGAG	1 cut(s)	870
HaeIII	GGCC	3 cut(s)	344, 534, 785
HhaI	GCGC	3 cut(s)	289, 831, 1057
Hin1II	CATG	4 cut(s)	373, 704, 782, 861
Hin6I	GCGC	3 cut(s)	287, 829, 1055
HinP1I	GCGC	3 cut(s)	287, 829, 1055
HindIII	AAGCTT	1 cut(s)	898
HinfI	GANTC	4 cut(s)	123, 179, 376, 485
HphI	GGTGA	1 cut(s)	841
Hpy166II	GTNNAC	2 cut(s)	332, 791
Hpy188I	TCNGA	2 cut(s)	184, 325
Hpy188III	TCNNGA	5 cut(s)	71, 303, 405, 452, 728
Hpy8I	GTNNAC	2 cut(s)	332, 791
HpyAV	CCTTC	3 cut(s)	77, 87, 320
HpyCH4III	ACNGT	2 cut(s)	159, 666
HpyCH4V	TGCA	8 cut(s)	464, 562, 670, 836, 950, 968, 1073, 1082
HpyF10VI	GCNNNNNNNGC	9 cut(s)	17, 293, 314, 407, 464, 746, 1049, 1079, 1088
HpyF3I	CTNAG	3 cut(s)	487, 901, 1087
Hsp92II	CATG	4 cut(s)	373, 704, 782, 861
HspAI	GCGC	3 cut(s)	287, 829, 1055
Kzo9I	GATC	3 cut(s)	226, 349, 474
LguI	GCTCTTC	1 cut(s)	636
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	7 cut(s)	271, 476, 560, 799, 952, 962, 1039
LweI	GCATC	9 cut(s)	190, 271, 304, 410, 445, 578, 655, 727, 937
MaeI	CTAG	3 cut(s)	411, 578, 1058
MaeIII	GTNAC	2 cut(s)	262, 554
MalI	GATC	3 cut(s)	228, 351, 476
MboI	GATC	3 cut(s)	226, 349, 474
MboII	GAAGA	5 cut(s)	82, 281, 554, 653, 1078
MfeI	CAATTG	1 cut(s)	290
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	6 cut(s)	290, 425, 447, 636, 803, 936
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	2 cut(s)	174, 404
MnlI	CCTC	5 cut(s)	240, 334, 503, 583, 705
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	2 cut(s)	609, 753
MspCI	CTTAAG	1 cut(s)	752
MunI	CAATTG	1 cut(s)	290
Mva1269I	GAATGC	1 cut(s)	814
MvnI	CGCG	2 cut(s)	829, 854
MwoI	GCNNNNNNNGC	9 cut(s)	17, 293, 314, 407, 464, 746, 1049, 1079, 1088
NdeII	GATC	3 cut(s)	226, 349, 474
NlaIII	CATG	4 cut(s)	373, 704, 782, 861
NlaIV	GGNNCC	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	554
NsbI	TGCGCA	1 cut(s)	288
NspI	RCATGY	1 cut(s)	782
PaeR7I	CTCGAG	1 cut(s)	726
PciSI	GCTCTTC	1 cut(s)	636
PctI	GAATGC	1 cut(s)	814
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	3 cut(s)	123, 179, 376
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	2 cut(s)	532, 866
RsaI	GTAC	2 cut(s)	845, 914
RsaNI	GTAC	2 cut(s)	844, 913
SapI	GCTCTTC	1 cut(s)	636
SaqAI	TTAA	2 cut(s)	609, 753
Sau3AI	GATC	3 cut(s)	226, 349, 474
Sau96I	GGNCC	2 cut(s)	532, 866
SchI	GAGTC	1 cut(s)	479
SduI	GDGCHC	1 cut(s)	121
SfaNI	GCATC	9 cut(s)	190, 271, 304, 410, 445, 578, 655, 727, 937
SfcI	CTRYAG	1 cut(s)	468
Sfr274I	CTCGAG	1 cut(s)	726
SinI	GGWCC	1 cut(s)	866
SlaI	CTCGAG	1 cut(s)	726
SmlI	CTYRAG	3 cut(s)	726, 752, 794
SmoI	CTYRAG	3 cut(s)	726, 752, 794
Sse9I	AATT	6 cut(s)	290, 425, 447, 636, 803, 936
SsiI	CCGC	3 cut(s)	443, 782, 852
SspMI	CTAG	3 cut(s)	411, 578, 1058
TaaI	ACNGT	2 cut(s)	159, 666
TaqI	TCGA	5 cut(s)	121, 302, 631, 727, 945
TasI	AATT	6 cut(s)	290, 425, 447, 636, 803, 936
TatI	WGTACW	1 cut(s)	843
TauI	GCSGC	2 cut(s)	446, 785
TfiI	GAWTC	3 cut(s)	123, 179, 376
Tru1I	TTAA	2 cut(s)	609, 753
Tru9I	TTAA	2 cut(s)	609, 753
TscAI	CASTG	3 cut(s)	542, 793, 991
TseFI	GTSAC	1 cut(s)	554
TseI	GCWGC	9 cut(s)	8, 284, 464, 548, 812, 950, 965, 1052, 1082
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	2 cut(s)	25, 701
TspGWI	ACGGA	1 cut(s)	374
TspRI	CASTG	3 cut(s)	542, 793, 991
Vha464I	CTTAAG	1 cut(s)	752
VpaK11BI	GGWCC	1 cut(s)	866
XceI	RCATGY	1 cut(s)	782
XhoI	CTCGAG	1 cut(s)	726
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	3 cut(s)	411, 578, 1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.