Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006594

Physical Location & Seq

Genomic Coordinates Forward (+)

827059 .. 831454

Gene Structure 4396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG012800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGATGCTGCCAAAGTAGCCGAGCTGAACGAGTTCATCACTAAAGTCAAGTCAAACCCGTCAATCCTTCACAACCCTTCTCTTGCTTTCTTCAAGTCCTATCTCCAAAGTCTCGGTGCTCGAATCCCAACAGACCCAAAAATGGAAACTAAAGAACAGTTTGATGATGACATTGTTGAATCTGATATTGAGTTGGATGATGCTGATGTTGTGGAGCCTGATAATGATCCTCCGCAACAGATGGGAGACCCATCAGTTGAAGTTACAGAAGAAATGCAGGATGCTGCGCAATTGGCGAAATCGAGAGCTATGGATGCTGTTTCTGAAGGTAAACTGGATGAGGCCATAGATCATATAACGGAAGCCATCATGTTGAATCCAACTTCAGCCATACTAAAAGCATCCAGAGCTAGTATCTTTGTCAAATTGAACAAACCAAATGCGGCAATTCGTGATGCTAATGCAGCTATAGAGATCAACCCGGACTCAGCAAAAGGATATAAAATAAGAGGAACTGCAAAGGCTATGTTGGGCCACTGGGAAGAAGCAGCAAGTGACCTGCATATAGCATCCAAACTAGATTATGATGAGGAGATTGGTTTGGTGCTTAAAAAGGTTGAACCTAATGCTCGAAAAATTGAAGAGCATCGCAAAAAATATCAACGGTTGCATAAAGAAAGGGAGATGAAAAGGGCTGAACATGAGAGACAGAGGCAAGCTGAAGCTCGAGTAAGTATAGTTTATGCCATATTTTCTTCTGTCCAAAAGCACAAAATATGTGATATTCACAGTTCTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006457 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016043 GO:0016491 GO:0016667 GO:0016671 GO:0022607 GO:0030544 GO:0031072 GO:0042802 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0055114 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

266

Amino Acids

29.82

Weight (kDa)

5.37

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HipN	PF18253	2 - 43	2.5e-18	Hsp70-interacting protein N N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17880 AT3G17880
fragaria_vesca	FvH4_5g17540 FvH4_5g17540 FvH4_5g17540 FvH4_5g17540
malus_domestica	MD06G1228800.v1.1 MD14G1238000.v1.1
prunus_persica	Prupe.2G018600_v2.0.a1 Prupe.2G018600_v2.0.a1 Prupe.2G018600_v2.0.a1 Prupe.2G018700_v2.0.a1 Prupe.5G235200_v2.0.a1
pyrus_communis	pycom06g20510 pycom14g19910
rosa_chinensis	RchiOBHm_Chr7g0178111
rosa_laevigata	RLG00000005470
rosa_multiflora	Rmu_sc0000425.1_g000010
rosa_roxburghii	Rroxscaffold_3G00275170
rosa_rugosa	Rorug06G0413500 Rorug06G0413600
rosa_samantha	Rh7AG012900 Rh7BG012800 Rh7CG012800 Rh7DG013100
rosa_wichuraiana	Rw7G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	288
Acc36I	ACCTGC	1 cut(s)	567
AciI	CCGC	2 cut(s)	233, 443
AclWI	GGATC	1 cut(s)	221
AcuI	CTGAAG	3 cut(s)	345, 369, 741
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	7 cut(s)	94, 179, 260, 376, 430, 620, 641
AluBI	AGCT	6 cut(s)	25, 308, 410, 467, 719, 725
AluI	AGCT	6 cut(s)	25, 308, 410, 467, 719, 725
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	3 cut(s)	116, 240, 700
AlwI	GGATC	1 cut(s)	221
Ama87I	CYCGRG	1 cut(s)	726
AoxI	GGCC	2 cut(s)	342, 532
ApeKI	GCWGC	4 cut(s)	8, 284, 464, 548
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	532
AsuC2I	CCSGG	1 cut(s)	482
AvaI	CYCGRG	1 cut(s)	726
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	3 cut(s)	271, 476, 560
BccI	CCATC	3 cut(s)	235, 259, 374
BcnI	CCSGG	1 cut(s)	482
BcoDI	GTCTC	3 cut(s)	116, 240, 700
BfaI	CTAG	2 cut(s)	411, 578
BfmI	CTRYAG	1 cut(s)	468
BfuAI	ACCTGC	1 cut(s)	567
BisI	GCNGC	5 cut(s)	9, 285, 444, 465, 549
BlsI	GCNGC	5 cut(s)	10, 286, 445, 466, 550
Bme1390I	CCNGG	1 cut(s)	482
BmeT110I	CYCGRG	1 cut(s)	726
BmgT120I	GGNCC	1 cut(s)	532
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	482
BmrI	ACTGGG	1 cut(s)	547
BmsI	GCATC	7 cut(s)	190, 271, 304, 410, 445, 578, 655
BmuI	ACTGGG	1 cut(s)	547
BpuMI	CCSGG	1 cut(s)	482
BsaBI	GATNNNNATC	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse1I	ACTGG	2 cut(s)	339, 542
Bse8I	GATNNNNATC	1 cut(s)	225
BseGI	GGATG	7 cut(s)	10, 202, 286, 319, 343, 401, 569
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	2 cut(s)	339, 542
BseRI	GAGGAG	1 cut(s)	605
BseXI	GCAGC	3 cut(s)	271, 476, 560
BshFI	GGCC	2 cut(s)	344, 534
BsiHKAI	GWGCWC	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	726
BsiSI	CCGG	1 cut(s)	482
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	3 cut(s)	116, 240, 700
BsnI	GGCC	2 cut(s)	344, 534
Bso31I	GGTCTC	1 cut(s)	240
BsoBI	CYCGRG	1 cut(s)	726
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	3 cut(s)	226, 349, 474
BspACI	CCGC	2 cut(s)	233, 443
BspANI	GGCC	2 cut(s)	344, 534
BspCNI	CTCAG	1 cut(s)	500
BspLI	GGNNCC	1 cut(s)	216
BspMI	ACCTGC	1 cut(s)	567
BspPI	GGATC	1 cut(s)	221
BspQI	GCTCTTC	1 cut(s)	636
BspTNI	GGTCTC	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	339, 542
BssMI	GATC	3 cut(s)	226, 349, 474
Bst4CI	ACNGT	3 cut(s)	159, 666, 791
Bst6I	CTCTTC	1 cut(s)	636
BstC8I	GCNNGC	1 cut(s)	717
BstDEI	CTNAG	1 cut(s)	487
BstF5I	GGATG	7 cut(s)	10, 202, 286, 319, 343, 401, 569
BstHHI	GCGC	1 cut(s)	289
BstKTI	GATC	3 cut(s)	229, 352, 477
BstMAI	GTCTC	3 cut(s)	116, 240, 700
BstMBI	GATC	3 cut(s)	226, 349, 474
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 293, 314, 407, 464
BstSCI	CCNGG	1 cut(s)	480
BstSFI	CTRYAG	1 cut(s)	468
BstV1I	GCAGC	3 cut(s)	271, 476, 560
BsuRI	GGCC	2 cut(s)	344, 534
BtgZI	GCGATG	1 cut(s)	632
BtsCI	GGATG	7 cut(s)	10, 202, 286, 319, 343, 401, 569
BtsIMutI	CAGTG	1 cut(s)	535
BveI	ACCTGC	1 cut(s)	567
Cac8I	GCNNGC	1 cut(s)	717
CfoI	GCGC	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	532
CviAII	CATG	2 cut(s)	370, 701
DdeI	CTNAG	1 cut(s)	487
DpnI	GATC	3 cut(s)	228, 351, 476
DpnII	GATC	3 cut(s)	226, 349, 474
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
Eco31I	GGTCTC	1 cut(s)	240
Eco57I	CTGAAG	3 cut(s)	345, 369, 741
Eco88I	CYCGRG	1 cut(s)	726
FaeI	CATG	2 cut(s)	373, 704
FatI	CATG	2 cut(s)	369, 700
Fnu4HI	GCNGC	5 cut(s)	9, 285, 444, 465, 549
FokI	GGATG	7 cut(s)	17, 209, 293, 326, 350, 388, 556
Fsp4HI	GCNGC	5 cut(s)	9, 285, 444, 465, 549
FspBI	CTAG	2 cut(s)	411, 578
FspI	TGCGCA	1 cut(s)	288
GlaI	GCGC	1 cut(s)	288
GluI	GCNGC	5 cut(s)	9, 285, 444, 465, 549
HaeIII	GGCC	2 cut(s)	344, 534
HapII	CCGG	1 cut(s)	482
HhaI	GCGC	1 cut(s)	289
Hin1II	CATG	2 cut(s)	373, 704
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HinfI	GANTC	4 cut(s)	123, 179, 376, 485
HpaII	CCGG	1 cut(s)	482
Hpy166II	GTNNAC	1 cut(s)	332
Hpy188I	TCNGA	2 cut(s)	184, 325
Hpy188III	TCNNGA	3 cut(s)	303, 405, 452
Hpy8I	GTNNAC	1 cut(s)	332
HpyAV	CCTTC	3 cut(s)	77, 87, 320
HpyCH4III	ACNGT	3 cut(s)	159, 666, 791
HpyCH4V	TGCA	5 cut(s)	277, 464, 518, 562, 670
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 293, 314, 407, 464
HpyF3I	CTNAG	1 cut(s)	487
Hsp92II	CATG	2 cut(s)	373, 704
HspAI	GCGC	1 cut(s)	287
Kzo9I	GATC	3 cut(s)	226, 349, 474
LguI	GCTCTTC	1 cut(s)	636
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	7 cut(s)	231, 263, 320, 418, 495, 523, 572
Lsp1109I	GCAGC	3 cut(s)	271, 476, 560
LweI	GCATC	7 cut(s)	190, 271, 304, 410, 445, 578, 655
MaeI	CTAG	2 cut(s)	411, 578
MaeIII	GTNAC	2 cut(s)	262, 554
MalI	GATC	3 cut(s)	228, 351, 476
MboI	GATC	3 cut(s)	226, 349, 474
MboII	GAAGA	5 cut(s)	82, 281, 554, 653, 747
MfeI	CAATTG	1 cut(s)	290
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	4 cut(s)	290, 425, 447, 636
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	2 cut(s)	174, 404
MnlI	CCTC	5 cut(s)	240, 334, 503, 583, 705
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	1 cut(s)	609
MspI	CCGG	1 cut(s)	482
MspR9I	CCNGG	1 cut(s)	482
MunI	CAATTG	1 cut(s)	290
MwoI	GCNNNNNNNGC	5 cut(s)	17, 293, 314, 407, 464
NciI	CCSGG	1 cut(s)	482
NdeII	GATC	3 cut(s)	226, 349, 474
NlaIII	CATG	2 cut(s)	373, 704
NlaIV	GGNNCC	1 cut(s)	216
NmeAIII	GCCGAG	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	554
NsbI	TGCGCA	1 cut(s)	288
PaeR7I	CTCGAG	1 cut(s)	726
PciSI	GCTCTTC	1 cut(s)	636
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	3 cut(s)	123, 179, 376
PkrI	GCNGC	5 cut(s)	10, 286, 445, 466, 550
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	532
PspXI	VCTCGAGB	1 cut(s)	726
SapI	GCTCTTC	1 cut(s)	636
SaqAI	TTAA	1 cut(s)	609
SatI	GCNGC	5 cut(s)	9, 285, 444, 465, 549
Sau3AI	GATC	3 cut(s)	226, 349, 474
Sau96I	GGNCC	1 cut(s)	532
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	1 cut(s)	482
SduI	GDGCHC	1 cut(s)	121
SfaNI	GCATC	7 cut(s)	190, 271, 304, 410, 445, 578, 655
SfcI	CTRYAG	1 cut(s)	468
Sfr274I	CTCGAG	1 cut(s)	726
SlaI	CTCGAG	1 cut(s)	726
SmlI	CTYRAG	1 cut(s)	726
SmoI	CTYRAG	1 cut(s)	726
Sse9I	AATT	4 cut(s)	290, 425, 447, 636
SsiI	CCGC	2 cut(s)	233, 443
SspMI	CTAG	2 cut(s)	411, 578
StyD4I	CCNGG	1 cut(s)	480
TaaI	ACNGT	3 cut(s)	159, 666, 791
TaqI	TCGA	4 cut(s)	121, 302, 631, 727
TasI	AATT	4 cut(s)	290, 425, 447, 636
TauI	GCSGC	1 cut(s)	446
TfiI	GAWTC	3 cut(s)	123, 179, 376
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TscAI	CASTG	1 cut(s)	542
TseFI	GTSAC	1 cut(s)	554
TseI	GCWGC	4 cut(s)	8, 284, 464, 548
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	2 cut(s)	25, 701
TspGWI	ACGGA	1 cut(s)	374
TspRI	CASTG	1 cut(s)	542
XhoI	CTCGAG	1 cut(s)	726
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	2 cut(s)	411, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.