Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006594

Physical Location & Seq

Genomic Coordinates Forward (+)

1826455 .. 1829990

Gene Structure 3536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G018600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTTGGTGTTGGTTTTAGAAAATTTGACATCTTATGTATCAGAACAGGATAAAGTTGATGAGGACATGTCAGACACTAAAGATCATTTTGATGCCAAAAGACCTGATCCATGCCGGGATAATGATGAGGAAATTGTTGAGTCTGATATCGAGTTGGATGCTACTGATGTTGTGGAGCCTGATAATGATCCTCCACAGAAGATGGGAAACCCATCGGTTGAAGTTACAGAAGAAATGCAGGATGCTGCACAAATAGAAAAATCAAAAGCTTTAGATGCCATCTCTGAAGGTAAGCTGGATGAAGCCATAGATCATATAACAGAAGCCATCATGTTGAATCCAACTTCAGCAATATTAAAAGCAACCAGAGCCAGTGTCTTTGTCAAATTGAATAAACCAAATGCAGCAATTCGTGATGCTAATGCCGCTTTAGAGATCAACCCCGACTCTGCAAAAGGATATAAAATAAGAGGAATGGCGAAGGCCATGTTAGGTCACTGGGAAGAAGCGGCAAGTGATCTTAATGTAGCATCAAAGTTAGATTATGATGGGGAGATTGGTTTGGTGCTTAAAAAGGTTGAACCTAATGTCCGCAAAATTGAGGAGCATCGCAGAAAATACGAACGCTTACATAAAGAAAGGGAGATAAAAAGTGCTGAACGTGAGAGAAAGCGGCAAGCCGAAGCTCGAGAACGGGATGCGTTGTCTGCTCTTAAGGATGGTGAAGTCATTGGAATACACTCTGCCAAAGAACTGGAGACAAAGTTGAATGCTGCTTCAAGGACATTGCGGCTTGCAATCCTCTACTTCACCACAAAATGGTGTGGTGCTTGCCGTGTCATATCTCCTTTGTATACAAGCTTAGCTGGAAAGTACCCAAAGGCCGTTTTCTTGAAAGTTGACATAGATGAGGCAAGAGATGTTGCTGCAGACTGGAATATAGGCAGTGTTCCGGCATTTTTCTTTGTAAGGAACGGTAAGGAGGTTGATAAGATGGTGGGGGCAGACAAAACTGCACTAGAAGGGAAGATTGCACAACATGCAGGCTCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006457 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016043 GO:0016491 GO:0016667 GO:0016671 GO:0022607 GO:0030544 GO:0031072 GO:0042802 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0055114 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

352

Amino Acids

38.99

Weight (kDa)

5.16

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17880 AT3G17880
fragaria_vesca	FvH4_5g17540 FvH4_5g17540 FvH4_5g17540 FvH4_5g17540
malus_domestica	MD06G1228800.v1.1 MD14G1238000.v1.1
prunus_persica	Prupe.2G018600_v2.0.a1 Prupe.2G018600_v2.0.a1 Prupe.2G018600_v2.0.a1 Prupe.2G018700_v2.0.a1 Prupe.5G235200_v2.0.a1
pyrus_communis	pycom06g20510 pycom14g19910
rosa_chinensis	RchiOBHm_Chr7g0178111
rosa_laevigata	RLG00000005470
rosa_multiflora	Rmu_sc0000425.1_g000010
rosa_roxburghii	Rroxscaffold_3G00275170
rosa_rugosa	Rorug06G0413500 Rorug06G0413600
rosa_samantha	Rh7AG012900 Rh7BG012800 Rh7CG012800 Rh7DG013100
rosa_wichuraiana	Rw7G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	819
AccI	GTMKAC	1 cut(s)	854
AciI	CCGC	5 cut(s)	426, 509, 592, 673, 790
AclWI	GGATC	2 cut(s)	101, 182
AcsI	RAATTY	1 cut(s)	22
AcuI	CTGAAG	2 cut(s)	306, 330
AfaI	GTAC	1 cut(s)	875
AfiI	CCNNNNNNNGG	1 cut(s)	819
AflII	CTTAAG	1 cut(s)	713
AflIII	ACRYGT	1 cut(s)	66
AgsI	TTSAA	7 cut(s)	221, 337, 391, 581, 769, 780, 895
AloI	GAACNNNNNNTCC	2 cut(s)	573, 605
AluBI	AGCT	5 cut(s)	269, 295, 686, 861, 866
AluI	AGCT	5 cut(s)	269, 295, 686, 861, 866
Alw26I	GTCTC	1 cut(s)	752
AlwI	GGATC	2 cut(s)	101, 182
Ama87I	CYCGRG	1 cut(s)	687
AoxI	GGCC	2 cut(s)	483, 882
ApeKI	GCWGC	4 cut(s)	245, 404, 773, 926
ApoI	RAATTY	1 cut(s)	22
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	2 cut(s)	734, 802
AvaI	CYCGRG	1 cut(s)	687
BbvI	GCAGC	4 cut(s)	232, 416, 760, 913
BccI	CCATC	7 cut(s)	196, 220, 287, 335, 542, 713, 988
BceAI	ACGGC	2 cut(s)	819, 869
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BcnI	CCSGG	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	752
BfaI	CTAG	1 cut(s)	1019
BfmI	CTRYAG	1 cut(s)	927
BfrI	CTTAAG	1 cut(s)	713
BisI	GCNGC	8 cut(s)	246, 405, 426, 510, 674, 774, 791, 927
BlpI	GCTNAGC	1 cut(s)	862
BlsI	GCNGC	8 cut(s)	247, 406, 427, 511, 675, 775, 792, 928
Bme1390I	CCNGG	1 cut(s)	116
BmeT110I	CYCGRG	1 cut(s)	687
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	116
BmrI	ACTGGG	1 cut(s)	508
BmsI	GCATC	8 cut(s)	82, 148, 232, 265, 406, 539, 616, 688
BmuI	ACTGGG	1 cut(s)	508
BpmI	CTGGAG	1 cut(s)	776
Bpu1102I	GCTNAGC	1 cut(s)	862
BpuMI	CCSGG	1 cut(s)	116
BsaBI	GATNNNNATC	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	749, 779
Bsc4I	CCNNNNNNNGG	1 cut(s)	819
Bse1I	ACTGG	4 cut(s)	372, 503, 759, 938
Bse3DI	GCAATG	1 cut(s)	785
Bse8I	GATNNNNATC	1 cut(s)	186
BseGI	GGATG	5 cut(s)	163, 247, 304, 703, 724
BseJI	GATNNNNATC	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	819
BseMI	GCAATG	1 cut(s)	785
BseNI	ACTGG	4 cut(s)	372, 503, 759, 938
BseRI	GAGGAG	1 cut(s)	617
BseXI	GCAGC	4 cut(s)	232, 416, 760, 913
BsgI	GTGCAG	2 cut(s)	231, 999
BshFI	GGCC	2 cut(s)	485, 884
BsiHKCI	CYCGRG	1 cut(s)	687
BsiSI	CCGG	2 cut(s)	115, 953
BslI	CCNNNNNNNGG	1 cut(s)	819
BsmAI	GTCTC	1 cut(s)	752
BsmI	GAATGC	1 cut(s)	775
BsnI	GGCC	2 cut(s)	485, 884
BsoBI	CYCGRG	1 cut(s)	687
Bsp143I	GATC	6 cut(s)	82, 106, 187, 310, 435, 517
Bsp1720I	GCTNAGC	1 cut(s)	862
BspACI	CCGC	5 cut(s)	426, 509, 592, 673, 790
BspANI	GGCC	2 cut(s)	485, 884
BspLI	GGNNCC	1 cut(s)	177
BspMAI	CTGCAG	1 cut(s)	931
BspPI	GGATC	2 cut(s)	101, 182
BspTI	CTTAAG	1 cut(s)	713
BsrDI	GCAATG	1 cut(s)	785
BsrI	ACTGG	4 cut(s)	372, 503, 759, 938
BssMI	GATC	6 cut(s)	82, 106, 187, 310, 435, 517
BssNAI	GTATAC	1 cut(s)	855
Bst1107I	GTATAC	1 cut(s)	855
Bst4CI	ACNGT	1 cut(s)	977
BstAFI	CTTAAG	1 cut(s)	713
BstAPI	GCANNNNNTGC	1 cut(s)	1040
BstC8I	GCNNGC	4 cut(s)	678, 795, 832, 1045
BstDEI	CTNAG	1 cut(s)	862
BstF5I	GGATG	5 cut(s)	163, 247, 304, 703, 724
BstKTI	GATC	6 cut(s)	85, 109, 190, 313, 438, 520
BstMAI	GTCTC	1 cut(s)	752
BstMBI	GATC	6 cut(s)	82, 106, 187, 310, 435, 517
BstMWI	GCNNNNNNNGC	5 cut(s)	275, 368, 425, 707, 1040
BstNSI	RCATGY	2 cut(s)	70, 1043
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	927
BstV1I	GCAGC	4 cut(s)	232, 416, 760, 913
BstXI	CCANNNNNNTGG	1 cut(s)	754
BstZ17I	GTATAC	1 cut(s)	855
BsuRI	GGCC	2 cut(s)	485, 884
BtgZI	GCGATG	1 cut(s)	593
BtsCI	GGATG	5 cut(s)	163, 247, 304, 703, 724
BtsI	GCAGTG	1 cut(s)	952
BtsIMutI	CAGTG	3 cut(s)	379, 496, 952
Cac8I	GCNNGC	4 cut(s)	678, 795, 832, 1045
Csp6I	GTAC	1 cut(s)	874
CviAII	CATG	5 cut(s)	67, 111, 331, 487, 1040
CviQI	GTAC	1 cut(s)	874
DdeI	CTNAG	1 cut(s)	862
DpnI	GATC	6 cut(s)	84, 108, 189, 312, 437, 519
DpnII	GATC	6 cut(s)	82, 106, 187, 310, 435, 517
Eco32I	GATATC	1 cut(s)	148
Eco57I	CTGAAG	2 cut(s)	306, 330
Eco88I	CYCGRG	1 cut(s)	687
EcoRV	GATATC	1 cut(s)	148
FaeI	CATG	5 cut(s)	70, 114, 334, 490, 1043
FatI	CATG	5 cut(s)	66, 110, 330, 486, 1039
FblI	GTMKAC	1 cut(s)	854
Fnu4HI	GCNGC	8 cut(s)	246, 405, 426, 510, 674, 774, 791, 927
FokI	GGATG	5 cut(s)	170, 254, 311, 710, 731
Fsp4HI	GCNGC	8 cut(s)	246, 405, 426, 510, 674, 774, 791, 927
FspBI	CTAG	1 cut(s)	1019
GluI	GCNGC	8 cut(s)	246, 405, 426, 510, 674, 774, 791, 927
GsuI	CTGGAG	1 cut(s)	776
HaeIII	GGCC	2 cut(s)	485, 884
HapII	CCGG	2 cut(s)	115, 953
Hin1II	CATG	5 cut(s)	70, 114, 334, 490, 1043
HincII	GTYRAC	1 cut(s)	901
HindII	GTYRAC	1 cut(s)	901
HindIII	AAGCTT	2 cut(s)	267, 859
HinfI	GANTC	3 cut(s)	140, 337, 446
HpaII	CCGG	2 cut(s)	115, 953
HphI	GGTGA	2 cut(s)	734, 802
Hpy166II	GTNNAC	2 cut(s)	855, 901
Hpy188I	TCNGA	4 cut(s)	43, 73, 145, 286
Hpy188III	TCNNGA	3 cut(s)	413, 689, 892
Hpy8I	GTNNAC	2 cut(s)	855, 901
HpyAV	CCTTC	3 cut(s)	281, 475, 1016
HpyCH4III	ACNGT	1 cut(s)	977
HpyCH4IV	ACGT	1 cut(s)	661
HpyCH4V	TGCA	9 cut(s)	238, 248, 404, 452, 797, 929, 1016, 1034, 1043
HpyF10VI	GCNNNNNNNGC	5 cut(s)	275, 368, 425, 707, 1040
HpyF3I	CTNAG	1 cut(s)	862
HpySE526I	ACGT	1 cut(s)	661
Hsp92II	CATG	5 cut(s)	70, 114, 334, 490, 1043
Kzo9I	GATC	6 cut(s)	82, 106, 187, 310, 435, 517
LmnI	GCTCC	2 cut(s)	175, 604
Lsp1109I	GCAGC	4 cut(s)	232, 416, 760, 913
LweI	GCATC	8 cut(s)	82, 148, 232, 265, 406, 539, 616, 688
MaeI	CTAG	1 cut(s)	1019
MaeII	ACGT	1 cut(s)	661
MaeIII	GTNAC	2 cut(s)	223, 494
MalI	GATC	6 cut(s)	84, 108, 189, 312, 437, 519
MboI	GATC	6 cut(s)	82, 106, 187, 310, 435, 517
MboII	GAAGA	4 cut(s)	211, 242, 515, 1039
MluCI	AATT	5 cut(s)	22, 132, 386, 408, 597
MlyI	GAGTC	2 cut(s)	149, 440
MmeI	TCCRAC	2 cut(s)	135, 365
MnlI	CCTC	8 cut(s)	55, 121, 201, 464, 595, 812, 904, 976
MseI	TTAA	4 cut(s)	356, 522, 570, 714
MslI	CAYNNNNRTG	1 cut(s)	90
MspCI	CTTAAG	1 cut(s)	713
MspI	CCGG	2 cut(s)	115, 953
MspR9I	CCNGG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	775
MwoI	GCNNNNNNNGC	5 cut(s)	275, 368, 425, 707, 1040
NciI	CCSGG	1 cut(s)	116
NdeII	GATC	6 cut(s)	82, 106, 187, 310, 435, 517
NlaIII	CATG	5 cut(s)	70, 114, 334, 490, 1043
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	1 cut(s)	494
NspI	RCATGY	2 cut(s)	70, 1043
PaeR7I	CTCGAG	1 cut(s)	687
PciI	ACATGT	1 cut(s)	66
PctI	GAATGC	1 cut(s)	775
PfeI	GAWTC	1 cut(s)	337
PflMI	CCANNNNNTGG	1 cut(s)	819
PkrI	GCNGC	8 cut(s)	247, 406, 427, 511, 675, 775, 792, 928
PleI	GAGTC	2 cut(s)	148, 440
PpsI	GAGTC	2 cut(s)	148, 440
PscI	ACATGT	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	177
PstI	CTGCAG	1 cut(s)	931
RsaI	GTAC	1 cut(s)	875
RsaNI	GTAC	1 cut(s)	874
RseI	CAYNNNNRTG	1 cut(s)	90
SaqAI	TTAA	4 cut(s)	356, 522, 570, 714
SatI	GCNGC	8 cut(s)	246, 405, 426, 510, 674, 774, 791, 927
Sau3AI	GATC	6 cut(s)	82, 106, 187, 310, 435, 517
SchI	GAGTC	2 cut(s)	149, 440
ScrFI	CCNGG	1 cut(s)	116
SfaNI	GCATC	8 cut(s)	82, 148, 232, 265, 406, 539, 616, 688
SfcI	CTRYAG	1 cut(s)	927
Sfr274I	CTCGAG	1 cut(s)	687
SlaI	CTCGAG	1 cut(s)	687
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	2 cut(s)	687, 713
SmoI	CTYRAG	2 cut(s)	687, 713
Sse9I	AATT	5 cut(s)	22, 132, 386, 408, 597
SsiI	CCGC	5 cut(s)	426, 509, 592, 673, 790
SspI	AATATT	1 cut(s)	354
SspMI	CTAG	1 cut(s)	1019
StyD4I	CCNGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	977
TaiI	ACGT	1 cut(s)	664
TaqI	TCGA	2 cut(s)	150, 688
TasI	AATT	5 cut(s)	22, 132, 386, 408, 597
TauI	GCSGC	4 cut(s)	428, 512, 676, 793
TfiI	GAWTC	1 cut(s)	337
Tru1I	TTAA	4 cut(s)	356, 522, 570, 714
Tru9I	TTAA	4 cut(s)	356, 522, 570, 714
TscAI	CASTG	3 cut(s)	379, 503, 952
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	4 cut(s)	245, 404, 773, 926
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	1 cut(s)	315
TspRI	CASTG	3 cut(s)	379, 503, 952
Van91I	CCANNNNNTGG	1 cut(s)	819
Vha464I	CTTAAG	1 cut(s)	713
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	2 cut(s)	70, 1043
XhoI	CTCGAG	1 cut(s)	687
XmiI	GTMKAC	1 cut(s)	854
XspI	CTAG	1 cut(s)	1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.