Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0006594

Physical Location & Seq

Genomic Coordinates Reverse (-)

35856015 .. 35859170

Gene Structure 3156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1228800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGATGCTGCAAAGGTAGGAGAGCTGAAGGAGTTCATCAGCGAGTGCAAGTCAAACCCTTCAATTATTCACACCCCTTCTCTCGCCTTCTTCAAGTCCTATCTCCAAAGCCTCGGCGCTCGGATTCCGCCGGTTCCGGAAATGGATAAAGATGACGGTGACATGTCAGACACGAAACAACATTTTGATGTCAAACGTGAACCATCTGGGGATAATGACGATCACATTGTTGAATCTGATATCGAGTTGGATGTTACTGATGTTGTGGAGCCTGATAACGATCCTCCACAGAAGATGGGAGATCCGTCAATTGAAGTTACAGAAGAAGTGCAGGATGCTGCACAAATAGAAAAATCAAAAGCTATTGATGCTATCTCTGAAGGCATGGCATCTGCTTGTTGTAAGCTGGACGAAGCCATAGATCATATAACAGAAGCCATAGTGTTGAACCCAGCTTCAGCTATACTAAAAGCAACCAGAGGTAAATTAATTACTATTTTTTCTAAATTCAATTTTTGCTTTTATTTAGTTGTGCTTACATTTTTTCATGTTTTGGTCGCCTTTTTTCATATGTATCGTTCCCTTATAAATCTCGTATCCTTGCTTTCAGCTAGTTTCTTTGTCAAACTGAATAAACCAAATGCGGCAATTCGTGATGCTAATGCAGCTTTAGAGATTAACCCCGACTCTGCAAAAGGATATAAAATAAGAGGAATGGCTAGGGCCATGTTGGGTCAATGGGAAGAGGCAGCAAGTGATCTGCATGTAGCATCAAAGTTAGATCATGATGAGGAGATTGGTTCGGTGCTTAAAAAGGTTGAACCTAATGTTCACAAAATTGAAGAGCATCGCAGAAAGTATGAACGCTTGCGTAAAGAAAGGGAGTCAAAAAGAGCTGAACAGGAGAGAAAGCGGCGAGCTGAAGCTCGAGAACAGGATGCGTCGTCTGCTCTTAAGGATGAAGTCATTGGTATACACTCAGCCAGAGAATTAGAGACAAAGTTGAATGCTGCTTCAAAGACATCACGCCTTGCAATCCTCTACTTCACAGCAACATGGTGTGGTCCTTGCCGCTTCATATCTCCTTTGTATACAAGCTTAGCTGGAAAGTACAAAAAAGTCGTTTTTTTGAAAGTTGACATCGATGAGGCAAGAGATGTGGCGGCAAACTGGAATATCAGCAGTGTTCCGGCCTTTTTCTTTGTGAAAAATGGTAAGGAGGTTGACAAGATGGTGGGGGCAGACAAAACTGCACTAGAAAGGAAGATTGCACAACATGCAGGCTCAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006457 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016043 GO:0016491 GO:0016667 GO:0016671 GO:0022607 GO:0030544 GO:0031072 GO:0042802 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0055114 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

431

Amino Acids

47.99

Weight (kDa)

5.91

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HipN	PF18253	2 - 43	1.7e-19	Hsp70-interacting protein N N-terminal domain
Thioredoxin	PF00085	339 - 424	2.8e-24	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17880 AT3G17880
fragaria_vesca	FvH4_5g17540 FvH4_5g17540 FvH4_5g17540 FvH4_5g17540
malus_domestica	MD06G1228800.v1.1 MD14G1238000.v1.1
prunus_persica	Prupe.2G018600_v2.0.a1 Prupe.2G018600_v2.0.a1 Prupe.2G018600_v2.0.a1 Prupe.2G018700_v2.0.a1 Prupe.5G235200_v2.0.a1
pyrus_communis	pycom06g20510 pycom14g19910
rosa_chinensis	RchiOBHm_Chr7g0178111
rosa_laevigata	RLG00000005470
rosa_multiflora	Rmu_sc0000425.1_g000010
rosa_roxburghii	Rroxscaffold_3G00275170
rosa_rugosa	Rorug06G0413500 Rorug06G0413600
rosa_samantha	Rh7AG012900 Rh7BG012800 Rh7CG012800 Rh7DG013100
rosa_wichuraiana	Rw7G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	587
AccI	GTMKAC	2 cut(s)	973, 1091
AccIII	TCCGGA	1 cut(s)	136
AciI	CCGC	5 cut(s)	128, 644, 913, 1072, 1163
AclWI	GGATC	2 cut(s)	275, 296
AcsI	RAATTY	1 cut(s)	506
AcuI	CTGAAG	4 cut(s)	47, 399, 441, 942
AfaI	GTAC	1 cut(s)	1112
AflII	CTTAAG	1 cut(s)	953
AflIII	ACRYGT	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	989
AlwI	GGATC	2 cut(s)	275, 296
Ama87I	CYCGRG	1 cut(s)	927
Aor13HI	TCCGGA	1 cut(s)	136
AoxI	GGCC	2 cut(s)	723, 1191
ApeKI	GCWGC	5 cut(s)	8, 338, 665, 749, 1010
ApoI	RAATTY	1 cut(s)	506
AseI	ATTAAT	1 cut(s)	488
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	2 cut(s)	723, 1064
AsuHPI	GGTGA	1 cut(s)	170
AvaI	CYCGRG	1 cut(s)	927
AvaII	GGWCC	1 cut(s)	1064
BbvI	GCAGC	4 cut(s)	325, 677, 761, 997
BccI	CCATC	3 cut(s)	211, 289, 1225
BciVI	GTATCC	1 cut(s)	607
BcoDI	GTCTC	1 cut(s)	989
BfaI	CTAG	3 cut(s)	612, 720, 1256
BfoI	RGCGCY	1 cut(s)	120
BfrI	CTTAAG	1 cut(s)	953
BfuI	GTATCC	1 cut(s)	607
BisI	GCNGC	9 cut(s)	9, 339, 645, 666, 750, 914, 1011, 1072, 1164
BlpI	GCTNAGC	1 cut(s)	1099
BlsI	GCNGC	9 cut(s)	10, 340, 646, 667, 751, 915, 1012, 1073, 1165
Bme18I	GGWCC	1 cut(s)	1064
BmeT110I	CYCGRG	1 cut(s)	927
BmgT120I	GGNCC	2 cut(s)	723, 1064
BmiI	GGNNCC	2 cut(s)	135, 270
BmsI	GCATC	7 cut(s)	325, 358, 398, 646, 779, 856, 928
Bpu1102I	GCTNAGC	1 cut(s)	1099
Bsa29I	ATCGAT	1 cut(s)	1143
BsaBI	GATNNNNATC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	112
BsaWI	WCCGGW	1 cut(s)	136
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	1175
Bse8I	GATNNNNATC	1 cut(s)	279
BseAI	TCCGGA	1 cut(s)	136
BseCI	ATCGAT	1 cut(s)	1143
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	5 cut(s)	10, 256, 340, 943, 964
BseJI	GATNNNNATC	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	993
BseNI	ACTGG	1 cut(s)	1175
BseRI	GAGGAG	1 cut(s)	806
BseXI	GCAGC	4 cut(s)	325, 677, 761, 997
BseYI	CCCAGC	1 cut(s)	451
BsgI	GTGCAG	3 cut(s)	324, 350, 1236
BshFI	GGCC	2 cut(s)	725, 1193
BshVI	ATCGAT	1 cut(s)	1143
BsiHKCI	CYCGRG	1 cut(s)	927
BsiSI	CCGG	3 cut(s)	131, 137, 1190
BsmAI	GTCTC	1 cut(s)	989
BsmI	GAATGC	1 cut(s)	1012
BsnI	GGCC	2 cut(s)	725, 1193
BsoBI	CYCGRG	1 cut(s)	927
Bsp13I	TCCGGA	1 cut(s)	136
Bsp143I	GATC	6 cut(s)	220, 280, 301, 421, 757, 781
Bsp1720I	GCTNAGC	1 cut(s)	1099
BspACI	CCGC	5 cut(s)	128, 644, 913, 1072, 1163
BspANI	GGCC	2 cut(s)	725, 1193
BspCNI	CTCAG	1 cut(s)	992
BspDI	ATCGAT	1 cut(s)	1143
BspEI	TCCGGA	1 cut(s)	136
BspHI	TCATGA	1 cut(s)	784
BspLI	GGNNCC	2 cut(s)	135, 270
BspPI	GGATC	2 cut(s)	275, 296
BspQI	GCTCTTC	1 cut(s)	837
BspTI	CTTAAG	1 cut(s)	953
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	1175
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	6 cut(s)	220, 280, 301, 421, 757, 781
BssNAI	GTATAC	2 cut(s)	974, 1092
Bst1107I	GTATAC	2 cut(s)	974, 1092
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	2 cut(s)	738, 837
BstAFI	CTTAAG	1 cut(s)	953
BstAPI	GCANNNNNTGC	1 cut(s)	1277
BstC8I	GCNNGC	3 cut(s)	869, 918, 1282
BstDEI	CTNAG	2 cut(s)	979, 1099
BstF5I	GGATG	5 cut(s)	10, 256, 340, 943, 964
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	6 cut(s)	223, 283, 304, 424, 760, 784
BstMAI	GTCTC	1 cut(s)	989
BstMBI	GATC	6 cut(s)	220, 280, 301, 421, 757, 781
BstMWI	GCNNNNNNNGC	4 cut(s)	368, 665, 947, 1277
BstNSI	RCATGY	3 cut(s)	166, 767, 1280
BstV1I	GCAGC	4 cut(s)	325, 677, 761, 997
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BstZ17I	GTATAC	2 cut(s)	974, 1092
Bsu15I	ATCGAT	1 cut(s)	1143
BsuI	GTATCC	1 cut(s)	607
BsuRI	GGCC	2 cut(s)	725, 1193
BsuTUI	ATCGAT	1 cut(s)	1143
BtgZI	GCGATG	1 cut(s)	833
BtsCI	GGATG	5 cut(s)	10, 256, 340, 943, 964
BtsI	GCAGTG	1 cut(s)	1189
BtsIMutI	CAGTG	1 cut(s)	1189
Cac8I	GCNNGC	3 cut(s)	869, 918, 1282
CciI	TCATGA	1 cut(s)	784
CfoI	GCGC	1 cut(s)	119
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	2 cut(s)	723, 1064
ClaI	ATCGAT	1 cut(s)	1143
CseI	GACGC	1 cut(s)	930
Csp6I	GTAC	1 cut(s)	1111
CspCI	CAANNNNNGTGG	2 cut(s)	1140, 1175
CviAII	CATG	8 cut(s)	163, 385, 548, 727, 764, 785, 1056, 1277
CviQI	GTAC	1 cut(s)	1111
DdeI	CTNAG	2 cut(s)	979, 1099
DpnI	GATC	6 cut(s)	222, 282, 303, 423, 759, 783
DpnII	GATC	6 cut(s)	220, 280, 301, 421, 757, 781
Eam1104I	CTCTTC	2 cut(s)	738, 837
EarI	CTCTTC	2 cut(s)	738, 837
EciI	GGCGGA	1 cut(s)	117
Eco32I	GATATC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	1064
Eco57I	CTGAAG	4 cut(s)	47, 399, 441, 942
Eco88I	CYCGRG	1 cut(s)	927
EcoRV	GATATC	1 cut(s)	241
FaeI	CATG	8 cut(s)	166, 388, 551, 730, 767, 788, 1059, 1280
FatI	CATG	8 cut(s)	162, 384, 547, 726, 763, 784, 1055, 1276
FauNDI	CATATG	1 cut(s)	570
FblI	GTMKAC	2 cut(s)	973, 1091
Fnu4HI	GCNGC	9 cut(s)	9, 339, 645, 666, 750, 914, 1011, 1072, 1164
FokI	GGATG	5 cut(s)	17, 263, 347, 950, 971
Fsp4HI	GCNGC	9 cut(s)	9, 339, 645, 666, 750, 914, 1011, 1072, 1164
FspBI	CTAG	3 cut(s)	612, 720, 1256
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	9 cut(s)	9, 339, 645, 666, 750, 914, 1011, 1072, 1164
GsaI	CCCAGC	1 cut(s)	455
HaeII	RGCGCY	1 cut(s)	120
HaeIII	GGCC	2 cut(s)	725, 1193
HapII	CCGG	3 cut(s)	131, 137, 1190
HgaI	GACGC	1 cut(s)	930
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	8 cut(s)	166, 388, 551, 730, 767, 788, 1059, 1280
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HincII	GTYRAC	2 cut(s)	1138, 1225
HindII	GTYRAC	2 cut(s)	1138, 1225
HindIII	AAGCTT	1 cut(s)	1096
HinfI	GANTC	4 cut(s)	124, 233, 686, 884
HpaII	CCGG	3 cut(s)	131, 137, 1190
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	6 cut(s)	200, 832, 974, 1092, 1138, 1225
Hpy188I	TCNGA	4 cut(s)	123, 169, 238, 379
Hpy188III	TCNNGA	4 cut(s)	137, 653, 785, 929
Hpy8I	GTNNAC	6 cut(s)	200, 832, 974, 1092, 1138, 1225
Hpy99I	CGWCG	1 cut(s)	946
HpyAV	CCTTC	5 cut(s)	22, 69, 87, 97, 374
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	4 cut(s)	368, 665, 947, 1277
HpyF3I	CTNAG	2 cut(s)	979, 1099
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	8 cut(s)	166, 388, 551, 730, 767, 788, 1059, 1280
HspAI	GCGC	1 cut(s)	117
Kpn2I	TCCGGA	1 cut(s)	136
Kzo9I	GATC	6 cut(s)	220, 280, 301, 421, 757, 781
LguI	GCTCTTC	1 cut(s)	837
LmnI	GCTCC	1 cut(s)	268
Lsp1109I	GCAGC	4 cut(s)	325, 677, 761, 997
LweI	GCATC	7 cut(s)	325, 358, 398, 646, 779, 856, 928
MaeI	CTAG	3 cut(s)	612, 720, 1256
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	3 cut(s)	158, 253, 316
MalI	GATC	6 cut(s)	222, 282, 303, 423, 759, 783
MboI	GATC	6 cut(s)	220, 280, 301, 421, 757, 781
MboII	GAAGA	6 cut(s)	82, 304, 335, 755, 854, 1276
MfeI	CAATTG	1 cut(s)	309
MflI	RGATCY	1 cut(s)	301
MluCI	AATT	9 cut(s)	63, 309, 485, 489, 506, 511, 648, 837, 989
MlyI	GAGTC	2 cut(s)	680, 893
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	9 cut(s)	122, 294, 473, 704, 739, 784, 1049, 1141, 1213
MroI	TCCGGA	1 cut(s)	136
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	4 cut(s)	488, 678, 810, 954
MslI	CAYNNNNRTG	1 cut(s)	186
MspCI	CTTAAG	1 cut(s)	953
MspI	CCGG	3 cut(s)	131, 137, 1190
MunI	CAATTG	1 cut(s)	309
Mva1269I	GAATGC	1 cut(s)	1012
MwoI	GCNNNNNNNGC	4 cut(s)	368, 665, 947, 1277
NdeI	CATATG	1 cut(s)	570
NdeII	GATC	6 cut(s)	220, 280, 301, 421, 757, 781
NlaIII	CATG	8 cut(s)	166, 388, 551, 730, 767, 788, 1059, 1280
NlaIV	GGNNCC	2 cut(s)	135, 270
NmeAIII	GCCGAG	1 cut(s)	93
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	3 cut(s)	166, 767, 1280
PaeR7I	CTCGAG	1 cut(s)	927
PagI	TCATGA	1 cut(s)	784
PciI	ACATGT	1 cut(s)	162
PciSI	GCTCTTC	1 cut(s)	837
PctI	GAATGC	1 cut(s)	1012
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	124, 233
PkrI	GCNGC	9 cut(s)	10, 340, 646, 667, 751, 915, 1012, 1073, 1165
PleI	GAGTC	2 cut(s)	680, 892
PpsI	GAGTC	2 cut(s)	680, 892
PscI	ACATGT	1 cut(s)	162
PshBI	ATTAAT	1 cut(s)	488
PsiI	TTATAA	1 cut(s)	587
PspFI	CCCAGC	1 cut(s)	451
PspN4I	GGNNCC	2 cut(s)	135, 270
PspPI	GGNCC	2 cut(s)	723, 1064
PsuI	RGATCY	1 cut(s)	301
RsaI	GTAC	1 cut(s)	1112
RsaNI	GTAC	1 cut(s)	1111
RseI	CAYNNNNRTG	1 cut(s)	186
SapI	GCTCTTC	1 cut(s)	837
SaqAI	TTAA	4 cut(s)	488, 678, 810, 954
SatI	GCNGC	9 cut(s)	9, 339, 645, 666, 750, 914, 1011, 1072, 1164
Sau3AI	GATC	6 cut(s)	220, 280, 301, 421, 757, 781
Sau96I	GGNCC	2 cut(s)	723, 1064
SchI	GAGTC	2 cut(s)	680, 893
SfaNI	GCATC	7 cut(s)	325, 358, 398, 646, 779, 856, 928
Sfr274I	CTCGAG	1 cut(s)	927
SinI	GGWCC	1 cut(s)	1064
SlaI	CTCGAG	1 cut(s)	927
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	2 cut(s)	927, 953
SmoI	CTYRAG	2 cut(s)	927, 953
Sse9I	AATT	9 cut(s)	63, 309, 485, 489, 506, 511, 648, 837, 989
SsiI	CCGC	5 cut(s)	128, 644, 913, 1072, 1163
SspMI	CTAG	3 cut(s)	612, 720, 1256
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	3 cut(s)	243, 928, 1143
TasI	AATT	9 cut(s)	63, 309, 485, 489, 506, 511, 648, 837, 989
TatI	WGTACW	1 cut(s)	1110
TauI	GCSGC	4 cut(s)	647, 916, 1074, 1166
TfiI	GAWTC	2 cut(s)	124, 233
Tru1I	TTAA	4 cut(s)	488, 678, 810, 954
Tru9I	TTAA	4 cut(s)	488, 678, 810, 954
TscAI	CASTG	1 cut(s)	1189
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	5 cut(s)	8, 338, 665, 749, 1010
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	6 cut(s)	25, 536, 557, 876, 975, 1066
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	1 cut(s)	1189
Vha464I	CTTAAG	1 cut(s)	953
VpaK11BI	GGWCC	1 cut(s)	1064
VspI	ATTAAT	1 cut(s)	488
XapI	RAATTY	1 cut(s)	506
XceI	RCATGY	3 cut(s)	166, 767, 1280
XhoI	CTCGAG	1 cut(s)	927
XmiI	GTMKAC	2 cut(s)	973, 1091
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	3 cut(s)	612, 720, 1256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.