Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006594

Physical Location & Seq

Genomic Coordinates Reverse (-)

23497339 .. 23500202

Gene Structure 2864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20510.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGATGCTGCAAAGGTACGAGAGCTGAAGGAGTTCATCAGCAAGTGCAAGTCAAACCCTTCAATTATTCACACCCCTTCTCTCGCCTTCTTCAAGTCCTATCTCCAAAGCCTCGGTGCTCGGATTCCGCCGGTTCCGGAAATGCAGGATAAAGATGACGGTGACATGTCAGACACGAAACAACATTTTGATGTCAAACGTGAACCATCTGGGGATAATGACGATCACATCGTTGAATCTGATATCGAGTTGGATGTTACTGATGTTGTGGAGCCTGATAACGATCCTCCACAGAAGATGGGAGATCCGTCAATTGAAGTTACAGAAGAAATGCAGGATGCTGCACAAATAGAAAAATCAAAAGCTATTGATGCTATCTCTGAAGGTAAGCTGGACGAAGCCATAGATCATATAACAGAAGCCATAGTGTTGAACCCAGCTTCAGCTATACTAAAAGCAACCAGAGCTAGTTTCTTTGTCAAACTGAATAAACCAAATGCGGCAATTCGCGATGCTAATGCAGCTTTAGAGATTAACCCCGACTCTGCAAAAGGATATAAAATGAGAGGAATGGCTAAGGCCATGTTGGGTCAATGGGAAGAGGCAGTGAGTGATCTGCATGTAGCATCAAAGATCGATCATGATGAGGAGATTGGTTCGGTGCTTAAAAAGGTTGAACCTAATGTTCACAAAATTGAAGAGCATCACAGAAAGTATGAACGCTTGCGTAAAGAAAGGGAGTCAAAAAGAGCTGAACAGGAGAGAAAGCGGCAAGCTGAAGCTCGAGAACGGGATGCGTCGTCTGCTCTTAAGGATGGAGAAGTAATTGGTATACACTCAGCCAGAGAATTAGAGACAAAGTTGAATGCTGCTTCAAAGACATCGCGCCTTGCAATCCTCTACTTCACAGCAACATGGTGTGGTCCTTGCCGCTTCATATCTCCCTTGTATACAAGCTTAGCTGGAAAGTACAAAAAAGTCGTTTTTTTGAAAGTTGACATCGATGAGGCAAGAGATGTGGCGGCAAACTGGAATATCAGCAGTGTTCCGGCCTTTTTCTTTGTGAAAAACGGTAAGGAGGTTGACAAGATGGTGGGGGCAGACAAAACTGCACTAGAAAAGAAGATTGCACAACATGCAGGCTCAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006457 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016043 GO:0016491 GO:0016667 GO:0016671 GO:0022607 GO:0030544 GO:0031072 GO:0042802 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0055114 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

384

Amino Acids

42.65

Weight (kDa)

5.77

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17880 AT3G17880
fragaria_vesca	FvH4_5g17540 FvH4_5g17540 FvH4_5g17540 FvH4_5g17540
malus_domestica	MD06G1228800.v1.1 MD14G1238000.v1.1
prunus_persica	Prupe.2G018600_v2.0.a1 Prupe.2G018600_v2.0.a1 Prupe.2G018600_v2.0.a1 Prupe.2G018700_v2.0.a1 Prupe.5G235200_v2.0.a1
pyrus_communis	pycom06g20510 pycom14g19910
rosa_chinensis	RchiOBHm_Chr7g0178111
rosa_laevigata	RLG00000005470
rosa_multiflora	Rmu_sc0000425.1_g000010
rosa_roxburghii	Rroxscaffold_3G00275170
rosa_rugosa	Rorug06G0413500 Rorug06G0413600
rosa_samantha	Rh7AG012900 Rh7BG012800 Rh7CG012800 Rh7DG013100
rosa_wichuraiana	Rw7G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	832, 950
AccII	CGCG	2 cut(s)	510, 886
AccIII	TCCGGA	1 cut(s)	136
AciI	CCGC	5 cut(s)	128, 500, 769, 931, 1022
AclWI	GGATC	2 cut(s)	278, 299
AcuI	CTGAAG	4 cut(s)	47, 402, 426, 798
AfaI	GTAC	2 cut(s)	18, 971
AflII	CTTAAG	1 cut(s)	809
AflIII	ACRYGT	1 cut(s)	165
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	848
AlwI	GGATC	2 cut(s)	278, 299
Ama87I	CYCGRG	1 cut(s)	783
Aor13HI	TCCGGA	1 cut(s)	136
AoxI	GGCC	2 cut(s)	579, 1050
ApeKI	GCWGC	4 cut(s)	8, 341, 521, 869
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	888
AspS9I	GGNCC	1 cut(s)	923
AsuHPI	GGTGA	1 cut(s)	173
AvaI	CYCGRG	1 cut(s)	783
AvaII	GGWCC	1 cut(s)	923
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	3 cut(s)	328, 533, 856
BccI	CCATC	4 cut(s)	214, 292, 809, 1084
BcgI	CGANNNNNNTGC	2 cut(s)	500, 534
BcoDI	GTCTC	1 cut(s)	848
BfaI	CTAG	2 cut(s)	468, 1115
BfrI	CTTAAG	1 cut(s)	809
BisI	GCNGC	8 cut(s)	9, 342, 501, 522, 770, 870, 931, 1023
BlpI	GCTNAGC	1 cut(s)	958
BlsI	GCNGC	8 cut(s)	10, 343, 502, 523, 771, 871, 932, 1024
Bme18I	GGWCC	1 cut(s)	923
BmeT110I	CYCGRG	1 cut(s)	783
BmgT120I	GGNCC	1 cut(s)	923
BmiI	GGNNCC	2 cut(s)	135, 273
BmsI	GCATC	6 cut(s)	328, 361, 502, 635, 712, 784
Bpu10I	CCTNAGC	1 cut(s)	576
Bpu1102I	GCTNAGC	1 cut(s)	958
Bsa29I	ATCGAT	2 cut(s)	636, 1002
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	112
BsaWI	WCCGGW	1 cut(s)	136
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	1034
Bse8I	GATNNNNATC	1 cut(s)	282
BseAI	TCCGGA	1 cut(s)	136
BseCI	ATCGAT	2 cut(s)	636, 1002
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	5 cut(s)	10, 259, 343, 799, 820
BseJI	GATNNNNATC	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	852
BseNI	ACTGG	1 cut(s)	1034
BseRI	GAGGAG	1 cut(s)	662
BseXI	GCAGC	3 cut(s)	328, 533, 856
BseYI	CCCAGC	1 cut(s)	436
BsgI	GTGCAG	2 cut(s)	327, 1095
Bsh1236I	CGCG	2 cut(s)	510, 886
BshFI	GGCC	2 cut(s)	581, 1052
BshVI	ATCGAT	2 cut(s)	636, 1002
BsiHKAI	GWGCWC	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	783
BsiSI	CCGG	3 cut(s)	131, 137, 1049
BsmAI	GTCTC	1 cut(s)	848
BsmI	GAATGC	1 cut(s)	871
BsnI	GGCC	2 cut(s)	581, 1052
BsoBI	CYCGRG	1 cut(s)	783
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp13I	TCCGGA	1 cut(s)	136
Bsp143I	GATC	7 cut(s)	223, 283, 304, 406, 613, 633, 637
Bsp1720I	GCTNAGC	1 cut(s)	958
Bsp68I	TCGCGA	1 cut(s)	510
BspACI	CCGC	5 cut(s)	128, 500, 769, 931, 1022
BspANI	GGCC	2 cut(s)	581, 1052
BspCNI	CTCAG	1 cut(s)	851
BspDI	ATCGAT	2 cut(s)	636, 1002
BspEI	TCCGGA	1 cut(s)	136
BspFNI	CGCG	2 cut(s)	510, 886
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	2 cut(s)	135, 273
BspPI	GGATC	2 cut(s)	278, 299
BspQI	GCTCTTC	1 cut(s)	693
BspTI	CTTAAG	1 cut(s)	809
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	1034
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	7 cut(s)	223, 283, 304, 406, 613, 633, 637
BssNAI	GTATAC	2 cut(s)	833, 951
Bst1107I	GTATAC	2 cut(s)	833, 951
Bst4CI	ACNGT	2 cut(s)	161, 1073
Bst6I	CTCTTC	2 cut(s)	594, 693
BstAFI	CTTAAG	1 cut(s)	809
BstAPI	GCANNNNNTGC	1 cut(s)	1136
BstC8I	GCNNGC	3 cut(s)	725, 774, 1141
BstDEI	CTNAG	3 cut(s)	576, 838, 958
BstF5I	GGATG	5 cut(s)	10, 259, 343, 799, 820
BstFNI	CGCG	2 cut(s)	510, 886
BstHHI	GCGC	1 cut(s)	888
BstKTI	GATC	7 cut(s)	226, 286, 307, 409, 616, 636, 640
BstMAI	GTCTC	1 cut(s)	848
BstMBI	GATC	7 cut(s)	223, 283, 304, 406, 613, 633, 637
BstMWI	GCNNNNNNNGC	5 cut(s)	371, 464, 521, 803, 1136
BstNSI	RCATGY	3 cut(s)	169, 623, 1139
BstUI	CGCG	2 cut(s)	510, 886
BstV1I	GCAGC	3 cut(s)	328, 533, 856
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BstZ17I	GTATAC	2 cut(s)	833, 951
Bsu15I	ATCGAT	2 cut(s)	636, 1002
BsuRI	GGCC	2 cut(s)	581, 1052
BsuTUI	ATCGAT	2 cut(s)	636, 1002
BtgZI	GCGATG	2 cut(s)	525, 867
BtsCI	GGATG	5 cut(s)	10, 259, 343, 799, 820
BtsI	GCAGTG	2 cut(s)	612, 1048
BtsIMutI	CAGTG	2 cut(s)	612, 1048
BtuMI	TCGCGA	1 cut(s)	510
Cac8I	GCNNGC	3 cut(s)	725, 774, 1141
CciI	TCATGA	1 cut(s)	640
CfoI	GCGC	1 cut(s)	888
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	923
ClaI	ATCGAT	2 cut(s)	636, 1002
CseI	GACGC	1 cut(s)	786
Csp6I	GTAC	2 cut(s)	17, 970
CspCI	CAANNNNNGTGG	2 cut(s)	999, 1034
CviAII	CATG	6 cut(s)	166, 583, 620, 641, 915, 1136
CviQI	GTAC	2 cut(s)	17, 970
DdeI	CTNAG	3 cut(s)	576, 838, 958
DpnI	GATC	7 cut(s)	225, 285, 306, 408, 615, 635, 639
DpnII	GATC	7 cut(s)	223, 283, 304, 406, 613, 633, 637
Eam1104I	CTCTTC	2 cut(s)	594, 693
EarI	CTCTTC	2 cut(s)	594, 693
EciI	GGCGGA	1 cut(s)	117
Eco32I	GATATC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	923
Eco57I	CTGAAG	4 cut(s)	47, 402, 426, 798
Eco88I	CYCGRG	1 cut(s)	783
EcoRV	GATATC	1 cut(s)	244
FaeI	CATG	6 cut(s)	169, 586, 623, 644, 918, 1139
FatI	CATG	6 cut(s)	165, 582, 619, 640, 914, 1135
FblI	GTMKAC	2 cut(s)	832, 950
Fnu4HI	GCNGC	8 cut(s)	9, 342, 501, 522, 770, 870, 931, 1023
FokI	GGATG	5 cut(s)	17, 266, 350, 806, 827
Fsp4HI	GCNGC	8 cut(s)	9, 342, 501, 522, 770, 870, 931, 1023
FspBI	CTAG	2 cut(s)	468, 1115
GlaI	GCGC	1 cut(s)	887
GluI	GCNGC	8 cut(s)	9, 342, 501, 522, 770, 870, 931, 1023
GsaI	CCCAGC	1 cut(s)	440
HaeIII	GGCC	2 cut(s)	581, 1052
HapII	CCGG	3 cut(s)	131, 137, 1049
HgaI	GACGC	1 cut(s)	786
HhaI	GCGC	1 cut(s)	888
Hin1II	CATG	6 cut(s)	169, 586, 623, 644, 918, 1139
Hin6I	GCGC	1 cut(s)	886
HinP1I	GCGC	1 cut(s)	886
HincII	GTYRAC	2 cut(s)	997, 1084
HindII	GTYRAC	2 cut(s)	997, 1084
HindIII	AAGCTT	1 cut(s)	955
HinfI	GANTC	4 cut(s)	124, 236, 542, 740
HpaII	CCGG	3 cut(s)	131, 137, 1049
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	6 cut(s)	203, 688, 833, 951, 997, 1084
Hpy188I	TCNGA	5 cut(s)	123, 172, 241, 382, 1151
Hpy188III	TCNNGA	4 cut(s)	137, 509, 641, 785
Hpy8I	GTNNAC	6 cut(s)	203, 688, 833, 951, 997, 1084
Hpy99I	CGWCG	1 cut(s)	802
HpyAV	CCTTC	5 cut(s)	22, 69, 87, 97, 377
HpyCH4III	ACNGT	2 cut(s)	161, 1073
HpyCH4IV	ACGT	1 cut(s)	199
HpyF10VI	GCNNNNNNNGC	5 cut(s)	371, 464, 521, 803, 1136
HpyF3I	CTNAG	3 cut(s)	576, 838, 958
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	6 cut(s)	169, 586, 623, 644, 918, 1139
HspAI	GCGC	1 cut(s)	886
Kpn2I	TCCGGA	1 cut(s)	136
Kzo9I	GATC	7 cut(s)	223, 283, 304, 406, 613, 633, 637
LguI	GCTCTTC	1 cut(s)	693
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	3 cut(s)	328, 533, 856
LweI	GCATC	6 cut(s)	328, 361, 502, 635, 712, 784
MaeI	CTAG	2 cut(s)	468, 1115
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	3 cut(s)	161, 256, 319
MalI	GATC	7 cut(s)	225, 285, 306, 408, 615, 635, 639
MboI	GATC	7 cut(s)	223, 283, 304, 406, 613, 633, 637
MboII	GAAGA	6 cut(s)	82, 307, 338, 611, 710, 1135
MfeI	CAATTG	1 cut(s)	312
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	6 cut(s)	63, 312, 504, 693, 825, 848
MlyI	GAGTC	2 cut(s)	536, 749
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	8 cut(s)	122, 297, 560, 595, 640, 908, 1000, 1072
MroI	TCCGGA	1 cut(s)	136
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	3 cut(s)	534, 666, 810
MslI	CAYNNNNRTG	1 cut(s)	189
MspCI	CTTAAG	1 cut(s)	809
MspI	CCGG	3 cut(s)	131, 137, 1049
MunI	CAATTG	1 cut(s)	312
Mva1269I	GAATGC	1 cut(s)	871
MvnI	CGCG	2 cut(s)	510, 886
MwoI	GCNNNNNNNGC	5 cut(s)	371, 464, 521, 803, 1136
NdeII	GATC	7 cut(s)	223, 283, 304, 406, 613, 633, 637
NlaIII	CATG	6 cut(s)	169, 586, 623, 644, 918, 1139
NlaIV	GGNNCC	2 cut(s)	135, 273
NmuCI	GTSAC	1 cut(s)	161
NruI	TCGCGA	1 cut(s)	510
NspI	RCATGY	3 cut(s)	169, 623, 1139
PaeR7I	CTCGAG	1 cut(s)	783
PagI	TCATGA	1 cut(s)	640
PciI	ACATGT	1 cut(s)	165
PciSI	GCTCTTC	1 cut(s)	693
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PctI	GAATGC	1 cut(s)	871
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	124, 236
PkrI	GCNGC	8 cut(s)	10, 343, 502, 523, 771, 871, 932, 1024
PleI	GAGTC	2 cut(s)	536, 748
PpsI	GAGTC	2 cut(s)	536, 748
PscI	ACATGT	1 cut(s)	165
PspFI	CCCAGC	1 cut(s)	436
PspN4I	GGNNCC	2 cut(s)	135, 273
PspPI	GGNCC	1 cut(s)	923
PsuI	RGATCY	1 cut(s)	304
RruI	TCGCGA	1 cut(s)	510
RsaI	GTAC	2 cut(s)	18, 971
RsaNI	GTAC	2 cut(s)	17, 970
RseI	CAYNNNNRTG	1 cut(s)	189
SapI	GCTCTTC	1 cut(s)	693
SaqAI	TTAA	3 cut(s)	534, 666, 810
SatI	GCNGC	8 cut(s)	9, 342, 501, 522, 770, 870, 931, 1023
Sau3AI	GATC	7 cut(s)	223, 283, 304, 406, 613, 633, 637
Sau96I	GGNCC	1 cut(s)	923
SchI	GAGTC	2 cut(s)	536, 749
SduI	GDGCHC	1 cut(s)	121
SfaNI	GCATC	6 cut(s)	328, 361, 502, 635, 712, 784
Sfr274I	CTCGAG	1 cut(s)	783
SinI	GGWCC	1 cut(s)	923
SlaI	CTCGAG	1 cut(s)	783
SmiMI	CAYNNNNRTG	1 cut(s)	189
SmlI	CTYRAG	2 cut(s)	783, 809
SmoI	CTYRAG	2 cut(s)	783, 809
Sse9I	AATT	6 cut(s)	63, 312, 504, 693, 825, 848
SsiI	CCGC	5 cut(s)	128, 500, 769, 931, 1022
SspMI	CTAG	2 cut(s)	468, 1115
TaaI	ACNGT	2 cut(s)	161, 1073
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	4 cut(s)	246, 636, 784, 1002
TasI	AATT	6 cut(s)	63, 312, 504, 693, 825, 848
TatI	WGTACW	1 cut(s)	969
TauI	GCSGC	4 cut(s)	503, 772, 933, 1025
TfiI	GAWTC	2 cut(s)	124, 236
Tru1I	TTAA	3 cut(s)	534, 666, 810
Tru9I	TTAA	3 cut(s)	534, 666, 810
TscAI	CASTG	2 cut(s)	612, 1048
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	4 cut(s)	8, 341, 521, 869
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	3 cut(s)	25, 732, 925
TspGWI	ACGGA	1 cut(s)	297
TspRI	CASTG	2 cut(s)	612, 1048
Vha464I	CTTAAG	1 cut(s)	809
VpaK11BI	GGWCC	1 cut(s)	923
XceI	RCATGY	3 cut(s)	169, 623, 1139
XhoI	CTCGAG	1 cut(s)	783
XmiI	GTMKAC	2 cut(s)	832, 950
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	2 cut(s)	468, 1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.