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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G17900 AT3G17900 |
| fragaria_vesca | FvH4_4g31960 FvH4_4g31960 FvH4_4g31960 FvH4_4g31960 FvH4_4g31960 |
| malus_domestica | MD13G1079000.v1.1 MD16G1078700.v1.1 |
| prunus_persica | Prupe.1G267800_v2.0.a1 Prupe.1G267800_v2.0.a1 |
| pyrus_communis | pycom13g06860 pycom16g06810 |
| rosa_chinensis | RchiOBHm_Chr1g0331861 RchiOBHm_Chr1g0331881 RchiOBHm_Chr1g0353921 RchiOBHm_Chr4g0440641 |
| rosa_laevigata | RLG00000006164 RLG00000029707 |
| rosa_multiflora | Rmu_co8243009.1_g000001 Rmu_sc0001915.1_g000004 Rmu_sc0005552.1_g000001 Rmu_sc0007658.1_g000002 Rmu_sc0008018.1_g000005 |
| rosa_roxburghii | Rroxscaffold_4G00301470 Rroxscaffold_5G00381450 |
| rosa_rugosa | Rorug01G0239400 Rorug04G0327100 |
| rosa_samantha | Rh1AG250900 Rh1BG221700 Rh1CG234700 Rh1DG248700 Rh4AG379000 Rh4BG391800 Rh4CG406300 |
| rosa_wichuraiana | Rw1G021890 Rw4G032550 Rw4G032590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1241 |
| AccBSI | CCGCTC | 4 cut(s) | 1214, 1378, 1818, 2295 |
| AccI | GTMKAC | 2 cut(s) | 808, 942 |
| AciI | CCGC | 8 cut(s) | 30, 71, 1058, 1212, 1378, 1818, 1841, 2295 |
| AclWI | GGATC | 8 cut(s) | 196, 290, 298, 363, 842, 1019, 1032, 2422 |
| AcsI | RAATTY | 4 cut(s) | 4, 1669, 1798, 2029 |
| AcuI | CTGAAG | 9 cut(s) | 150, 1362, 1605, 1760, 2003, 2022, 2259, 2408, 2495 |
| AcyI | GRCGYC | 1 cut(s) | 1572 |
| AfaI | GTAC | 4 cut(s) | 526, 1317, 1626, 2169 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 445, 1241, 2141, 2294, 2437 |
| AgsI | TTSAA | 9 cut(s) | 389, 1206, 1286, 1460, 1592, 1643, 1805, 1891, 2493 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 815 |
| AjnI | CCWGG | 4 cut(s) | 373, 686, 996, 1423 |
| AleI | CACNNNNGTG | 1 cut(s) | 2192 |
| AluBI | AGCT | 9 cut(s) | 65, 872, 1200, 1263, 1348, 1487, 1646, 2377, 2383 |
| AluI | AGCT | 9 cut(s) | 65, 872, 1200, 1263, 1348, 1487, 1646, 2377, 2383 |
| Alw21I | GWGCWC | 4 cut(s) | 1265, 1350, 1659, 1698 |
| AlwI | GGATC | 8 cut(s) | 196, 290, 298, 363, 842, 1019, 1032, 2422 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 728, 1241, 2473 |
| Ama87I | CYCGRG | 1 cut(s) | 1448 |
| AoxI | GGCC | 2 cut(s) | 41, 1306 |
| ApeKI | GCWGC | 2 cut(s) | 1484, 1751 |
| ApoI | RAATTY | 4 cut(s) | 4, 1669, 1798, 2029 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 212, 244 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1201 |
| AspA2I | CCTAGG | 1 cut(s) | 2140 |
| AspS9I | GGNCC | 4 cut(s) | 994, 1000, 1244, 1973 |
| AsuC2I | CCSGG | 1 cut(s) | 102 |
| AsuII | TTCGAA | 1 cut(s) | 2354 |
| AvaI | CYCGRG | 1 cut(s) | 1448 |
| AvaII | GGWCC | 4 cut(s) | 994, 1000, 1244, 1973 |
| AvrII | CCTAGG | 1 cut(s) | 2140 |
| AxyI | CCTNAGG | 2 cut(s) | 1162, 2338 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 962, 995 |
| BamHI | GGATCC | 1 cut(s) | 1024 |
| BanII | GRGCYC | 2 cut(s) | 1265, 1350 |
| BauI | CACGAG | 1 cut(s) | 1914 |
| Bbv12I | GWGCWC | 4 cut(s) | 1265, 1350, 1659, 1698 |
| BbvCI | CCTCAGC | 1 cut(s) | 453 |
| BbvI | GCAGC | 2 cut(s) | 1496, 1738 |
| BceAI | ACGGC | 1 cut(s) | 2379 |
| BciT130I | CCWGG | 4 cut(s) | 375, 688, 998, 1425 |
| BciVI | GTATCC | 1 cut(s) | 2410 |
| BclI | TGATCA | 1 cut(s) | 1831 |
| BcnI | CCSGG | 1 cut(s) | 102 |
| BfaI | CTAG | 5 cut(s) | 873, 1113, 2141, 2378, 2515 |
| BfmI | CTRYAG | 3 cut(s) | 974, 2094, 2190 |
| BfuI | GTATCC | 1 cut(s) | 2410 |
| BglII | AGATCT | 2 cut(s) | 166, 2044 |
| BisI | GCNGC | 4 cut(s) | 71, 1485, 1752, 2296 |
| BlnI | CCTAGG | 1 cut(s) | 2140 |
| BlsI | GCNGC | 4 cut(s) | 72, 1486, 1753, 2297 |
| Bme1390I | CCNGG | 5 cut(s) | 102, 375, 688, 998, 1425 |
| Bme18I | GGWCC | 4 cut(s) | 994, 1000, 1244, 1973 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 815 |
| BmeT110I | CYCGRG | 1 cut(s) | 1448 |
| BmgT120I | GGNCC | 4 cut(s) | 994, 1000, 1244, 1973 |
| BmiI | GGNNCC | 4 cut(s) | 1026, 1246, 1536, 1975 |
| BmrFI | CCNGG | 5 cut(s) | 102, 375, 688, 998, 1425 |
| BmsI | GCATC | 7 cut(s) | 547, 997, 1422, 1428, 2033, 2081, 2333 |
| BpmI | CTGGAG | 4 cut(s) | 213, 882, 1533, 2249 |
| Bpu10I | CCTNAGC | 2 cut(s) | 453, 2299 |
| Bpu14I | TTCGAA | 1 cut(s) | 2354 |
| BpuEI | CTTGAG | 1 cut(s) | 664 |
| BpuMI | CCSGG | 1 cut(s) | 102 |
| BsaBI | GATNNNNATC | 4 cut(s) | 165, 171, 389, 1023 |
| BsaHI | GRCGYC | 1 cut(s) | 1572 |
| BsaI | GGTCTC | 5 cut(s) | 189, 490, 925, 1903, 1920 |
| BsaJI | CCNNGG | 4 cut(s) | 374, 1423, 1978, 2140 |
| BsaWI | WCCGGW | 1 cut(s) | 46 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 900, 930, 1531, 1561, 2071, 2101 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 445, 1241, 2141, 2294, 2437 |
| Bse1I | ACTGG | 5 cut(s) | 320, 475, 1235, 1246, 2232 |
| Bse21I | CCTNAGG | 2 cut(s) | 1162, 2338 |
| Bse8I | GATNNNNATC | 4 cut(s) | 165, 171, 389, 1023 |
| BseBI | CCWGG | 4 cut(s) | 375, 688, 998, 1425 |
| BseDI | CCNNGG | 4 cut(s) | 374, 1423, 1978, 2140 |
| BseGI | GGATG | 7 cut(s) | 284, 544, 654, 787, 1419, 2072, 2348 |
| BseJI | GATNNNNATC | 4 cut(s) | 165, 171, 389, 1023 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 445, 1241, 2141, 2294, 2437 |
| BseNI | ACTGG | 5 cut(s) | 320, 475, 1235, 1246, 2232 |
| BseRI | GAGGAG | 3 cut(s) | 852, 1453, 1706 |
| BseXI | GCAGC | 2 cut(s) | 1496, 1738 |
| BsgI | GTGCAG | 3 cut(s) | 1119, 1215, 1737 |
| Bsh1285I | CGRYCG | 2 cut(s) | 175, 350 |
| BshFI | GGCC | 2 cut(s) | 43, 1308 |
| BsiEI | CGRYCG | 2 cut(s) | 175, 350 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1265, 1350, 1659, 1698 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1448 |
| BsiSI | CCGG | 2 cut(s) | 47, 102 |
| BslFI | GGGAC | 5 cut(s) | 933, 1307, 1351, 1959, 2086 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 445, 1241, 2141, 2294, 2437 |
| BsmBI | CGTCTC | 1 cut(s) | 658 |
| BsmFI | GGGAC | 5 cut(s) | 933, 1307, 1351, 1959, 2086 |
| BsnI | GGCC | 2 cut(s) | 43, 1308 |
| Bso31I | GGTCTC | 5 cut(s) | 189, 490, 925, 1903, 1920 |
| BsoBI | CYCGRG | 1 cut(s) | 1448 |
| Bsp119I | TTCGAA | 1 cut(s) | 2354 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1265, 1350, 1659, 1698 |
| Bsp19I | CCATGG | 1 cut(s) | 1978 |
| BspACI | CCGC | 8 cut(s) | 30, 71, 1058, 1212, 1378, 1818, 1841, 2295 |
| BspANI | GGCC | 2 cut(s) | 43, 1308 |
| BspLI | GGNNCC | 4 cut(s) | 1026, 1246, 1536, 1975 |
| BspMAI | CTGCAG | 1 cut(s) | 978 |
| BspPI | GGATC | 8 cut(s) | 196, 290, 298, 363, 842, 1019, 1032, 2422 |
| BspQI | GCTCTTC | 2 cut(s) | 126, 1338 |
| BspT104I | TTCGAA | 1 cut(s) | 2354 |
| BspTNI | GGTCTC | 5 cut(s) | 189, 490, 925, 1903, 1920 |
| BsrBI | CCGCTC | 4 cut(s) | 1214, 1378, 1818, 2295 |
| BsrI | ACTGG | 5 cut(s) | 320, 475, 1235, 1246, 2232 |
| BssECI | CCNNGG | 4 cut(s) | 374, 1423, 1978, 2140 |
| BssNI | GRCGYC | 1 cut(s) | 1572 |
| BssSI | CACGAG | 1 cut(s) | 1914 |
| BssT1I | CCWWGG | 2 cut(s) | 1978, 2140 |
| Bst2BI | CACGAG | 1 cut(s) | 1914 |
| Bst2UI | CCWGG | 4 cut(s) | 375, 688, 998, 1425 |
| Bst6I | CTCTTC | 7 cut(s) | 126, 780, 1181, 1338, 1791, 2022, 2427 |
| BstACI | GRCGYC | 1 cut(s) | 1572 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1663 |
| BstBI | TTCGAA | 1 cut(s) | 2354 |
| BstC8I | GCNNGC | 4 cut(s) | 400, 1146, 1636, 1716 |
| BstDSI | CCRYGG | 1 cut(s) | 1978 |
| BstF5I | GGATG | 7 cut(s) | 284, 544, 654, 787, 1419, 2072, 2348 |
| BstMCI | CGRYCG | 2 cut(s) | 175, 350 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 29, 566, 1663, 2203, 2304 |
| BstNI | CCWGG | 4 cut(s) | 375, 688, 998, 1425 |
| BstNSI | RCATGY | 2 cut(s) | 402, 1638 |
| BstSCI | CCNGG | 5 cut(s) | 100, 373, 686, 996, 1423 |
| BstSFI | CTRYAG | 3 cut(s) | 974, 2094, 2190 |
| BstV1I | GCAGC | 2 cut(s) | 1496, 1738 |
| BstX2I | RGATCY | 6 cut(s) | 166, 188, 303, 1024, 2044, 2427 |
| BstYI | RGATCY | 6 cut(s) | 166, 188, 303, 1024, 2044, 2427 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1162, 2338 |
| BsuI | GTATCC | 1 cut(s) | 2410 |
| BsuRI | GGCC | 2 cut(s) | 43, 1308 |
| BtgI | CCRYGG | 1 cut(s) | 1978 |
| BtsCI | GGATG | 7 cut(s) | 284, 544, 654, 787, 1419, 2072, 2348 |
| BtsI | GCAGTG | 2 cut(s) | 1131, 1227 |
| BtsIMutI | CAGTG | 6 cut(s) | 826, 1131, 1227, 2199, 2225, 2471 |
| Cac8I | GCNNGC | 4 cut(s) | 400, 1146, 1636, 1716 |
| CaiI | CAGNNNCTG | 3 cut(s) | 728, 1241, 2473 |
| Cfr13I | GGNCC | 4 cut(s) | 994, 1000, 1244, 1973 |
| CseI | GACGC | 2 cut(s) | 1580, 1935 |
| Csp6I | GTAC | 4 cut(s) | 525, 1316, 1625, 2168 |
| CviAII | CATG | 6 cut(s) | 399, 1544, 1635, 1854, 1979, 2432 |
| CviQI | GTAC | 4 cut(s) | 525, 1316, 1625, 2168 |
| DraI | TTTAAA | 1 cut(s) | 1044 |
| DriI | GACNNNNNGTC | 1 cut(s) | 815 |
| Eam1104I | CTCTTC | 7 cut(s) | 126, 780, 1181, 1338, 1791, 2022, 2427 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 815 |
| EarI | CTCTTC | 7 cut(s) | 126, 780, 1181, 1338, 1791, 2022, 2427 |
| Ecl136II | GAGCTC | 2 cut(s) | 1263, 1348 |
| Eco130I | CCWWGG | 2 cut(s) | 1978, 2140 |
| Eco24I | GRGCYC | 2 cut(s) | 1265, 1350 |
| Eco31I | GGTCTC | 5 cut(s) | 189, 490, 925, 1903, 1920 |
| Eco32I | GATATC | 1 cut(s) | 1152 |
| Eco47I | GGWCC | 4 cut(s) | 994, 1000, 1244, 1973 |
| Eco53kI | GAGCTC | 2 cut(s) | 1263, 1348 |
| Eco57I | CTGAAG | 9 cut(s) | 150, 1362, 1605, 1760, 2003, 2022, 2259, 2408, 2495 |
| Eco81I | CCTNAGG | 2 cut(s) | 1162, 2338 |
| Eco88I | CYCGRG | 1 cut(s) | 1448 |
| EcoICRI | GAGCTC | 2 cut(s) | 1263, 1348 |
| EcoRII | CCWGG | 4 cut(s) | 373, 686, 996, 1423 |
| EcoRV | GATATC | 1 cut(s) | 1152 |
| EcoT14I | CCWWGG | 2 cut(s) | 1978, 2140 |
| EcoT22I | ATGCAT | 1 cut(s) | 1640 |
| EcoT38I | GRGCYC | 2 cut(s) | 1265, 1350 |
| ErhI | CCWWGG | 2 cut(s) | 1978, 2140 |
| Esp3I | CGTCTC | 1 cut(s) | 658 |
| FaeI | CATG | 6 cut(s) | 402, 1547, 1638, 1857, 1982, 2435 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 666, 698, 796, 828, 2282, 2314 |
| FaqI | GGGAC | 5 cut(s) | 933, 1307, 1351, 1959, 2086 |
| FatI | CATG | 6 cut(s) | 398, 1543, 1634, 1853, 1978, 2431 |
| FauI | CCCGC | 1 cut(s) | 1371 |
| FauNDI | CATATG | 1 cut(s) | 1030 |
| FbaI | TGATCA | 1 cut(s) | 1831 |
| FblI | GTMKAC | 2 cut(s) | 808, 942 |
| Fnu4HI | GCNGC | 4 cut(s) | 71, 1485, 1752, 2296 |
| FokI | GGATG | 7 cut(s) | 291, 551, 661, 794, 1406, 2059, 2355 |
| FriOI | GRGCYC | 2 cut(s) | 1265, 1350 |
| Fsp4HI | GCNGC | 4 cut(s) | 71, 1485, 1752, 2296 |
| FspBI | CTAG | 5 cut(s) | 873, 1113, 2141, 2378, 2515 |
| GluI | GCNGC | 4 cut(s) | 71, 1485, 1752, 2296 |
| GsuI | CTGGAG | 4 cut(s) | 213, 882, 1533, 2249 |
| HaeIII | GGCC | 2 cut(s) | 43, 1308 |
| HapII | CCGG | 2 cut(s) | 47, 102 |
| HgaI | GACGC | 2 cut(s) | 1580, 1935 |
| Hin1I | GRCGYC | 1 cut(s) | 1572 |
| Hin1II | CATG | 6 cut(s) | 402, 1547, 1638, 1857, 1982, 2435 |
| HincII | GTYRAC | 1 cut(s) | 943 |
| HindII | GTYRAC | 1 cut(s) | 943 |
| HpaII | CCGG | 2 cut(s) | 47, 102 |
| Hpy166II | GTNNAC | 4 cut(s) | 809, 943, 1403, 2201 |
| Hpy8I | GTNNAC | 4 cut(s) | 809, 943, 1403, 2201 |
| HpyAV | CCTTC | 7 cut(s) | 110, 1403, 1425, 1626, 2086, 2283, 2361 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 29, 566, 1663, 2203, 2304 |
| Hsp92I | GRCGYC | 1 cut(s) | 1572 |
| Hsp92II | CATG | 6 cut(s) | 402, 1547, 1638, 1857, 1982, 2435 |
| Ksp22I | TGATCA | 1 cut(s) | 1831 |
| LguI | GCTCTTC | 2 cut(s) | 126, 1338 |
| LmnI | GCTCC | 7 cut(s) | 379, 1375, 1540, 1552, 1693, 1815, 2071 |
| Lsp1109I | GCAGC | 2 cut(s) | 1496, 1738 |
| LweI | GCATC | 7 cut(s) | 547, 997, 1422, 1428, 2033, 2081, 2333 |
| MaeI | CTAG | 5 cut(s) | 873, 1113, 2141, 2378, 2515 |
| MaeIII | GTNAC | 6 cut(s) | 106, 581, 1237, 1298, 2211, 2469 |
| MbiI | CCGCTC | 4 cut(s) | 1214, 1378, 1818, 2295 |
| MfeI | CAATTG | 1 cut(s) | 1581 |
| MflI | RGATCY | 6 cut(s) | 166, 188, 303, 1024, 2044, 2427 |
| MhlI | GDGCHC | 4 cut(s) | 1265, 1350, 1659, 1698 |
| MluCI | AATT | 7 cut(s) | 4, 563, 1581, 1669, 1798, 2029, 2220 |
| MlyI | GAGTC | 5 cut(s) | 224, 332, 559, 734, 1398 |
| MmeI | TCCRAC | 3 cut(s) | 333, 1814, 2114 |
| Mph1103I | ATGCAT | 1 cut(s) | 1640 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1201 |
| MseI | TTAA | 5 cut(s) | 444, 1043, 1673, 1823, 2012 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1858, 2192 |
| MspA1I | CMGCKG | 2 cut(s) | 1060, 1487 |
| MspI | CCGG | 2 cut(s) | 47, 102 |
| MspR9I | CCNGG | 5 cut(s) | 102, 375, 688, 998, 1425 |
| MunI | CAATTG | 1 cut(s) | 1581 |
| MvaI | CCWGG | 4 cut(s) | 375, 688, 998, 1425 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 29, 566, 1663, 2203, 2304 |
| NciI | CCSGG | 1 cut(s) | 102 |
| NcoI | CCATGG | 1 cut(s) | 1978 |
| NdeI | CATATG | 1 cut(s) | 1030 |
| NlaIII | CATG | 6 cut(s) | 402, 1547, 1638, 1857, 1982, 2435 |
| NlaIV | GGNNCC | 4 cut(s) | 1026, 1246, 1536, 1975 |
| NmuCI | GTSAC | 2 cut(s) | 581, 2469 |
| NsiI | ATGCAT | 1 cut(s) | 1640 |
| NspI | RCATGY | 2 cut(s) | 402, 1638 |
| NspV | TTCGAA | 1 cut(s) | 2354 |
| OliI | CACNNNNGTG | 1 cut(s) | 2192 |
| PaeI | GCATGC | 2 cut(s) | 402, 1638 |
| PaeR7I | CTCGAG | 1 cut(s) | 1448 |
| PciSI | GCTCTTC | 2 cut(s) | 126, 1338 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1201 |
| PfeI | GAWTC | 8 cut(s) | 252, 385, 608, 635, 1036, 1874, 2145, 2261 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1241 |
| PkrI | GCNGC | 4 cut(s) | 72, 1486, 1753, 2297 |
| Ple19I | CGATCG | 1 cut(s) | 175 |
| PleI | GAGTC | 5 cut(s) | 223, 331, 558, 733, 1398 |
| PpsI | GAGTC | 5 cut(s) | 223, 331, 558, 733, 1398 |
| Psp124BI | GAGCTC | 2 cut(s) | 1265, 1350 |
| Psp6I | CCWGG | 4 cut(s) | 373, 686, 996, 1423 |
| PspGI | CCWGG | 4 cut(s) | 373, 686, 996, 1423 |
| PspN4I | GGNNCC | 4 cut(s) | 1026, 1246, 1536, 1975 |
| PspPI | GGNCC | 4 cut(s) | 994, 1000, 1244, 1973 |
| PstI | CTGCAG | 1 cut(s) | 978 |
| PstNI | CAGNNNCTG | 3 cut(s) | 728, 1241, 2473 |
| PsuI | RGATCY | 6 cut(s) | 166, 188, 303, 1024, 2044, 2427 |
| PvuI | CGATCG | 1 cut(s) | 175 |
| PvuII | CAGCTG | 1 cut(s) | 1487 |
| RsaI | GTAC | 4 cut(s) | 526, 1317, 1626, 2169 |
| RsaNI | GTAC | 4 cut(s) | 525, 1316, 1625, 2168 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1858, 2192 |
| SacI | GAGCTC | 2 cut(s) | 1265, 1350 |
| SalI | GTCGAC | 1 cut(s) | 941 |
| SapI | GCTCTTC | 2 cut(s) | 126, 1338 |
| SaqAI | TTAA | 5 cut(s) | 444, 1043, 1673, 1823, 2012 |
| SatI | GCNGC | 4 cut(s) | 71, 1485, 1752, 2296 |
| Sau96I | GGNCC | 4 cut(s) | 994, 1000, 1244, 1973 |
| SchI | GAGTC | 5 cut(s) | 224, 332, 559, 734, 1398 |
| ScrFI | CCNGG | 5 cut(s) | 102, 375, 688, 998, 1425 |
| SduI | GDGCHC | 4 cut(s) | 1265, 1350, 1659, 1698 |
| SfaNI | GCATC | 7 cut(s) | 547, 997, 1422, 1428, 2033, 2081, 2333 |
| SfcI | CTRYAG | 3 cut(s) | 974, 2094, 2190 |
| Sfr274I | CTCGAG | 1 cut(s) | 1448 |
| SfuI | TTCGAA | 1 cut(s) | 2354 |
| SinI | GGWCC | 4 cut(s) | 994, 1000, 1244, 1973 |
| SlaI | CTCGAG | 1 cut(s) | 1448 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1858, 2192 |
| SmlI | CTYRAG | 2 cut(s) | 643, 1448 |
| SmoI | CTYRAG | 2 cut(s) | 643, 1448 |
| SphI | GCATGC | 2 cut(s) | 402, 1638 |
| Sse9I | AATT | 7 cut(s) | 4, 563, 1581, 1669, 1798, 2029, 2220 |
| SsiI | CCGC | 8 cut(s) | 30, 71, 1058, 1212, 1378, 1818, 1841, 2295 |
| SspMI | CTAG | 5 cut(s) | 873, 1113, 2141, 2378, 2515 |
| SstI | GAGCTC | 2 cut(s) | 1265, 1350 |
| StyD4I | CCNGG | 5 cut(s) | 100, 373, 686, 996, 1423 |
| StyI | CCWWGG | 2 cut(s) | 1978, 2140 |
| TasI | AATT | 7 cut(s) | 4, 563, 1581, 1669, 1798, 2029, 2220 |
| TatI | WGTACW | 1 cut(s) | 2167 |
| TauI | GCSGC | 2 cut(s) | 73, 2298 |
| TfiI | GAWTC | 8 cut(s) | 252, 385, 608, 635, 1036, 1874, 2145, 2261 |
| Tru1I | TTAA | 5 cut(s) | 444, 1043, 1673, 1823, 2012 |
| Tru9I | TTAA | 5 cut(s) | 444, 1043, 1673, 1823, 2012 |
| TscAI | CASTG | 6 cut(s) | 826, 1138, 1234, 2199, 2232, 2478 |
| TseFI | GTSAC | 2 cut(s) | 581, 2469 |
| TseI | GCWGC | 2 cut(s) | 1484, 1751 |
| Tsp45I | GTSAC | 2 cut(s) | 581, 2469 |
| TspDTI | ATGAA | 5 cut(s) | 17, 177, 326, 798, 1693 |
| TspGWI | ACGGA | 1 cut(s) | 1912 |
| TspRI | CASTG | 6 cut(s) | 826, 1138, 1234, 2199, 2232, 2478 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1241 |
| VpaK11BI | GGWCC | 4 cut(s) | 994, 1000, 1244, 1973 |
| XapI | RAATTY | 4 cut(s) | 4, 1669, 1798, 2029 |
| XceI | RCATGY | 2 cut(s) | 402, 1638 |
| XhoI | CTCGAG | 1 cut(s) | 1448 |
| XmaJI | CCTAGG | 1 cut(s) | 2140 |
| XmiI | GTMKAC | 2 cut(s) | 808, 942 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1201 |
| XspI | CTAG | 5 cut(s) | 873, 1113, 2141, 2378, 2515 |
| Zsp2I | ATGCAT | 1 cut(s) | 1640 |