Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003049

Physical Location & Seq

Genomic Coordinates Forward (+)

50200875 .. 50201231

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0327100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGATTGGAAAAAAACGCAACATTCGGCTGGTCAACAATTATCGTCCGCCGGGGAAACTCGCCGACTTCGATCTTGTGTTCGCTGCTACCAAGGCCCTGGTCAAACATCACCGTCCGCCGCCAGTGAAACCCAAGGCTGCTCTGAAGGCCAAGGCCAAGGCTCAGATGGACAAGGCTGCTCGATTGTTGAAGAACCACGCCTTGGCTTTCTTGGGTTTCTCGGTCGTATGCGTGCGTGTTAAGGAGGTGAGGATGATCGTGCTCACCGTTGCTCTCTTCTTTGCGATGGTTGCAACAGCACTGAGCGAGATGACGGCCCGGCGCACAGCAACCCTGATTTTCAAGTCTCTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

13.1

Weight (kDa)

11.35

Isoelectric Point (pI)

23.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17900 AT3G17900
fragaria_vesca	FvH4_4g31960 FvH4_4g31960 FvH4_4g31960 FvH4_4g31960 FvH4_4g31960
malus_domestica	MD13G1079000.v1.1 MD16G1078700.v1.1
prunus_persica	Prupe.1G267800_v2.0.a1 Prupe.1G267800_v2.0.a1
pyrus_communis	pycom13g06860 pycom16g06810
rosa_chinensis	RchiOBHm_Chr1g0331861 RchiOBHm_Chr1g0331881 RchiOBHm_Chr1g0353921 RchiOBHm_Chr4g0440641
rosa_laevigata	RLG00000006164 RLG00000029707
rosa_multiflora	Rmu_co8243009.1_g000001 Rmu_sc0001915.1_g000004 Rmu_sc0005552.1_g000001 Rmu_sc0007658.1_g000002 Rmu_sc0008018.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301470 Rroxscaffold_5G00381450
rosa_rugosa	Rorug01G0239400 Rorug04G0327100
rosa_samantha	Rh1AG250900 Rh1BG221700 Rh1CG234700 Rh1DG248700 Rh4AG379000 Rh4BG391800 Rh4CG406300
rosa_wichuraiana	Rw1G021890 Rw4G032550 Rw4G032590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	202
AciI	CCGC	3 cut(s)	47, 116, 119
AcuI	CTGAAG	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	202
AgsI	TTSAA	2 cut(s)	190, 343
AjnI	CCWGG	1 cut(s)	96
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	1 cut(s)	351
AoxI	GGCC	4 cut(s)	93, 147, 153, 315
ApeKI	GCWGC	3 cut(s)	83, 137, 176
AspLEI	GCGC	1 cut(s)	324
AspS9I	GGNCC	2 cut(s)	94, 316
AsuC2I	CCSGG	2 cut(s)	51, 319
AsuHPI	GGTGA	3 cut(s)	101, 256, 259
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	3 cut(s)	70, 124, 163
BccI	CCATC	2 cut(s)	160, 280
BceAI	ACGGC	1 cut(s)	330
BciT130I	CCWGG	1 cut(s)	98
BcnI	CCSGG	2 cut(s)	51, 319
BcoDI	GTCTC	1 cut(s)	351
BisI	GCNGC	4 cut(s)	84, 119, 138, 177
BlsI	GCNGC	4 cut(s)	85, 120, 139, 178
Bme1390I	CCNGG	3 cut(s)	51, 98, 319
BmgT120I	GGNCC	2 cut(s)	94, 316
BmrFI	CCNGG	3 cut(s)	51, 98, 319
BpuMI	CCSGG	2 cut(s)	51, 319
BsaJI	CCNNGG	7 cut(s)	50, 90, 96, 132, 150, 156, 201
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	7 cut(s)	50, 90, 96, 132, 150, 156, 201
BseGI	GGATG	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMII	CTCAG	2 cut(s)	176, 293
BseNI	ACTGG	1 cut(s)	122
BseXI	GCAGC	3 cut(s)	70, 124, 163
Bsh1285I	CGRYCG	1 cut(s)	225
BshFI	GGCC	4 cut(s)	95, 149, 155, 317
BsiEI	CGRYCG	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	264
BsiSI	CCGG	2 cut(s)	50, 319
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmAI	GTCTC	1 cut(s)	351
BsnI	GGCC	4 cut(s)	95, 149, 155, 317
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	2 cut(s)	70, 255
BspACI	CCGC	3 cut(s)	47, 116, 119
BspANI	GGCC	4 cut(s)	95, 149, 155, 317
BspCNI	CTCAG	2 cut(s)	175, 294
BsrI	ACTGG	1 cut(s)	122
BssECI	CCNNGG	7 cut(s)	50, 90, 96, 132, 150, 156, 201
BssMI	GATC	2 cut(s)	70, 255
BssT1I	CCWWGG	5 cut(s)	90, 132, 150, 156, 201
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	2 cut(s)	113, 268
Bst6I	CTCTTC	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	2 cut(s)	162, 302
BstF5I	GGATG	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	324
BstKTI	GATC	2 cut(s)	73, 258
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	2 cut(s)	70, 255
BstMCI	CGRYCG	1 cut(s)	225
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 146, 290
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	3 cut(s)	49, 96, 317
BstV1I	GCAGC	3 cut(s)	70, 124, 163
BstXI	CCANNNNNNTGG	1 cut(s)	97
BsuRI	GGCC	4 cut(s)	95, 149, 155, 317
BtgZI	GCGATG	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	258
BtsIMutI	CAGTG	2 cut(s)	129, 299
Cac8I	GCNNGC	1 cut(s)	233
CfoI	GCGC	1 cut(s)	324
Cfr13I	GGNCC	2 cut(s)	94, 316
CviJI	RGCY	9 cut(s)	28, 95, 137, 149, 155, 161, 176, 206, 317
CviKI_1	RGCY	9 cut(s)	28, 95, 137, 149, 155, 161, 176, 206, 317
DdeI	CTNAG	2 cut(s)	162, 302
DpnI	GATC	2 cut(s)	72, 257
DpnII	GATC	2 cut(s)	70, 255
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
EciI	GGCGGA	2 cut(s)	36, 105
Eco130I	CCWWGG	5 cut(s)	90, 132, 150, 156, 201
Eco57I	CTGAAG	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	96
EcoT14I	CCWWGG	5 cut(s)	90, 132, 150, 156, 201
ErhI	CCWWGG	5 cut(s)	90, 132, 150, 156, 201
FaiI	YATR	1 cut(s)	229
Fnu4HI	GCNGC	4 cut(s)	84, 119, 138, 177
FokI	GGATG	1 cut(s)	265
Fsp4HI	GCNGC	4 cut(s)	84, 119, 138, 177
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	4 cut(s)	84, 119, 138, 177
HaeIII	GGCC	4 cut(s)	95, 149, 155, 317
HapII	CCGG	2 cut(s)	50, 319
HhaI	GCGC	1 cut(s)	324
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HpaII	CCGG	2 cut(s)	50, 319
HphI	GGTGA	3 cut(s)	101, 256, 259
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	144, 165, 351
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	2 cut(s)	113, 268
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 146, 290
HpyF3I	CTNAG	2 cut(s)	162, 302
HspAI	GCGC	1 cut(s)	322
Kzo9I	GATC	2 cut(s)	70, 255
LpnPI	CCDG	7 cut(s)	14, 63, 83, 110, 135, 332, 347
Lsp1109I	GCAGC	3 cut(s)	70, 124, 163
MalI	GATC	2 cut(s)	72, 257
MboI	GATC	2 cut(s)	70, 255
MboII	GAAGA	2 cut(s)	202, 268
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	1 cut(s)	37
MnlI	CCTC	2 cut(s)	238, 243
MseI	TTAA	1 cut(s)	240
MspI	CCGG	2 cut(s)	50, 319
MspR9I	CCNGG	3 cut(s)	51, 98, 319
MvaI	CCWGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	3 cut(s)	92, 146, 290
NciI	CCSGG	2 cut(s)	51, 319
NdeII	GATC	2 cut(s)	70, 255
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 264
PflMI	CCANNNNNTGG	1 cut(s)	202
PkrI	GCNGC	4 cut(s)	85, 120, 139, 178
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PspPI	GGNCC	2 cut(s)	94, 316
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	4 cut(s)	84, 119, 138, 177
Sau3AI	GATC	2 cut(s)	70, 255
Sau96I	GGNCC	2 cut(s)	94, 316
ScrFI	CCNGG	3 cut(s)	51, 98, 319
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	1 cut(s)	249
Sse9I	AATT	1 cut(s)	37
SsiI	CCGC	3 cut(s)	47, 116, 119
StyD4I	CCNGG	3 cut(s)	49, 96, 317
StyI	CCWWGG	5 cut(s)	90, 132, 150, 156, 201
TaaI	ACNGT	2 cut(s)	113, 268
TaqI	TCGA	2 cut(s)	69, 181
TaqII	GACCGA	1 cut(s)	211
TasI	AATT	1 cut(s)	37
TauI	GCSGC	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	2 cut(s)	129, 306
TseI	GCWGC	3 cut(s)	83, 137, 176
TspRI	CASTG	2 cut(s)	129, 306
Van91I	CCANNNNNTGG	1 cut(s)	202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.