Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007658.1

Orthogroup ID

OG0003049

Physical Location & Seq

Genomic Coordinates Reverse (-)

12762 .. 14133

Gene Structure 1372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007658.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atgggaatctttaatttagacattttttgtttgtttagttttggaatcttaagcttatttctttcccttgatctcactagaatttcttgtgacaggagaggtgaagagcattcttttattcttaaaccagcaacaaccctgtggaagaatttcaagactggtggtgatagaagcactcaacaatcactagcacaggctggaaatgcagcatcaagttcacgtctagcattgaagactgctgaaggaaaaaaggctgcttcaactgctgaccagtatgcaattatggtatcctgtcgttgcaactacacggagtcaagattgttttttaaacagccaacaagttggcgaccgcgtatttcaagggatcttatgatatctgttgcgtctgaaatgtctggtcaatctagtgcaccaactgctggagtctcccaacttcttgttcaggtcttaactcttcaggcttcaaacttaacaactgaagatctatctctgacggttcttgccccggcttcatttacttcgccaccttcagtcgtatccttgaattcttcaccttcttctccaatgagtccatttgttggttttcctgggtttacaggaagaacaactgccgagagacataactctacaatgcagaggctgaactcagcaccctctatattgacaaatcagaaacaagcttcttctaaagaacaagcttctccagtatctgatgttgttcctactgctggtttaggttgtacacatttgtggcttcagagtagagttccactaggatgtgttccctcccaatctacggccaccatcaagcttgagctacttccattgaccgatggcataattacgctggacactcttcagattgatgtcaaggaaaaaggttgtacttacatacctgagcactcgctgaagattaatgccacttccagtatttcctcggggattctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

316

Amino Acids

33.87

Weight (kDa)

8.86

Isoelectric Point (pI)

60.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17900 AT3G17900
fragaria_vesca	FvH4_4g31960 FvH4_4g31960 FvH4_4g31960 FvH4_4g31960 FvH4_4g31960
malus_domestica	MD13G1079000.v1.1 MD16G1078700.v1.1
prunus_persica	Prupe.1G267800_v2.0.a1 Prupe.1G267800_v2.0.a1
pyrus_communis	pycom13g06860 pycom16g06810
rosa_chinensis	RchiOBHm_Chr1g0331861 RchiOBHm_Chr1g0331881 RchiOBHm_Chr1g0353921 RchiOBHm_Chr4g0440641
rosa_laevigata	RLG00000006164 RLG00000029707
rosa_multiflora	Rmu_co8243009.1_g000001 Rmu_sc0001915.1_g000004 Rmu_sc0005552.1_g000001 Rmu_sc0007658.1_g000002 Rmu_sc0008018.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301470 Rroxscaffold_5G00381450
rosa_rugosa	Rorug01G0239400 Rorug04G0327100
rosa_samantha	Rh1AG250900 Rh1BG221700 Rh1CG234700 Rh1DG248700 Rh4AG379000 Rh4BG391800 Rh4CG406300
rosa_wichuraiana	Rw1G021890 Rw4G032550 Rw4G032590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	419, 578
AccII	CGCG	1 cut(s)	352
AciI	CCGC	1 cut(s)	350
AclWI	GGATC	1 cut(s)	372
AcoI	YGGCCR	1 cut(s)	798
AcsI	RAATTY	3 cut(s)	81, 148, 544
AcuI	CTGAAG	7 cut(s)	261, 440, 498, 513, 740, 842, 929
AfaI	GTAC	2 cut(s)	742, 886
AfiI	CCNNNNNNNGG	4 cut(s)	419, 578, 728, 796
AflII	CTTAAG	1 cut(s)	49
AgsI	TTSAA	6 cut(s)	154, 232, 261, 360, 465, 544
AjiI	CACGTC	1 cut(s)	221
AjnI	CCWGG	1 cut(s)	586
AjuI	GAANNNNNNNTTGG	2 cut(s)	423, 455
AleI	CACNNNNGTG	1 cut(s)	748
AluBI	AGCT	5 cut(s)	54, 680, 698, 811, 817
AluI	AGCT	5 cut(s)	54, 680, 698, 811, 817
Alw21I	GWGCWC	2 cut(s)	412, 903
Alw26I	GTCTC	2 cut(s)	430, 610
Alw44I	GTGCAC	1 cut(s)	408
AlwI	GGATC	1 cut(s)	372
AlwNI	CAGNNNCTG	2 cut(s)	640, 710
Ama87I	CYCGRG	1 cut(s)	937
AoxI	GGCC	1 cut(s)	798
ApaLI	GTGCAC	1 cut(s)	408
ApeKI	GCWGC	2 cut(s)	206, 254
ApoI	RAATTY	3 cut(s)	81, 148, 544
AseI	ATTAAT	1 cut(s)	915
Asp700I	GAANNNNTTC	1 cut(s)	149
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	3 cut(s)	113, 176, 543
AvaI	CYCGRG	1 cut(s)	937
BaeGI	GKGCMC	1 cut(s)	412
BbsI	GAAGAC	1 cut(s)	239
Bbv12I	GWGCWC	2 cut(s)	412, 903
BbvI	GCAGC	2 cut(s)	218, 241
BccI	CCATC	2 cut(s)	812, 827
BceAI	ACGGC	1 cut(s)	813
BciT130I	CCWGG	1 cut(s)	588
BciVI	GTATCC	2 cut(s)	298, 547
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	2 cut(s)	430, 610
BfaI	CTAG	5 cut(s)	78, 188, 224, 405, 773
BfrI	CTTAAG	1 cut(s)	49
BfuI	GTATCC	2 cut(s)	298, 547
BglII	AGATCT	1 cut(s)	481
BisI	GCNGC	2 cut(s)	207, 255
BlsI	GCNGC	2 cut(s)	208, 256
Bme1390I	CCNGG	2 cut(s)	506, 588
BmeT110I	CYCGRG	1 cut(s)	937
BmgBI	CACGTC	1 cut(s)	221
BmrFI	CCNGG	2 cut(s)	506, 588
BmsI	GCATC	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	239
BpmI	CTGGAG	2 cut(s)	441, 687
Bpu10I	CCTNAGC	1 cut(s)	897
BpuEI	CTTGAG	1 cut(s)	833
BpuMI	CCSGG	1 cut(s)	506
BsaJI	CCNNGG	3 cut(s)	504, 587, 936
Bsc4I	CCNNNNNNNGG	4 cut(s)	419, 578, 728, 796
Bse1I	ACTGG	4 cut(s)	163, 271, 704, 927
BseBI	CCWGG	1 cut(s)	588
BseDI	CCNNGG	3 cut(s)	504, 587, 936
BseGI	GGATG	1 cut(s)	782
BseLI	CCNNNNNNNGG	4 cut(s)	419, 578, 728, 796
BseMII	CTCAG	2 cut(s)	660, 888
BseNI	ACTGG	4 cut(s)	163, 271, 704, 927
BseSI	GKGCMC	1 cut(s)	412
BseXI	GCAGC	2 cut(s)	218, 241
Bsh1236I	CGCG	1 cut(s)	352
Bsh1285I	CGRYCG	1 cut(s)	350
BshFI	GGCC	1 cut(s)	800
BsiEI	CGRYCG	1 cut(s)	350
BsiHKAI	GWGCWC	2 cut(s)	412, 903
BsiHKCI	CYCGRG	1 cut(s)	937
BsiSI	CCGG	1 cut(s)	506
BslI	CCNNNNNNNGG	4 cut(s)	419, 578, 728, 796
BsmAI	GTCTC	2 cut(s)	430, 610
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	800
BsoBI	CYCGRG	1 cut(s)	937
Bsp1286I	GDGCHC	2 cut(s)	412, 903
Bsp1407I	TGTACA	1 cut(s)	740
Bsp143I	GATC	3 cut(s)	70, 364, 481
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	1 cut(s)	800
BspCNI	CTCAG	2 cut(s)	659, 889
BspFNI	CGCG	1 cut(s)	352
BspPI	GGATC	1 cut(s)	372
BspQI	GCTCTTC	1 cut(s)	99
BspTI	CTTAAG	1 cut(s)	49
BsrGI	TGTACA	1 cut(s)	740
BsrI	ACTGG	4 cut(s)	163, 271, 704, 927
BssECI	CCNNGG	3 cut(s)	504, 587, 936
BssMI	GATC	3 cut(s)	70, 364, 481
Bst2UI	CCWGG	1 cut(s)	588
Bst4CI	ACNGT	1 cut(s)	496
Bst6I	CTCTTC	3 cut(s)	99, 459, 861
BstAFI	CTTAAG	1 cut(s)	49
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstAUI	TGTACA	1 cut(s)	740
BstDEI	CTNAG	2 cut(s)	646, 897
BstF5I	GGATG	1 cut(s)	782
BstFNI	CGCG	1 cut(s)	352
BstKTI	GATC	3 cut(s)	73, 367, 484
BstMAI	GTCTC	2 cut(s)	430, 610
BstMBI	GATC	3 cut(s)	70, 364, 481
BstMCI	CGRYCG	1 cut(s)	350
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 263, 416
BstNI	CCWGG	1 cut(s)	588
BstSCI	CCNGG	2 cut(s)	504, 586
BstSLI	GKGCMC	1 cut(s)	412
BstUI	CGCG	1 cut(s)	352
BstV1I	GCAGC	2 cut(s)	218, 241
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	2 cut(s)	364, 481
BstXI	CCANNNNNNTGG	1 cut(s)	342
BstYI	RGATCY	2 cut(s)	364, 481
BsuI	GTATCC	2 cut(s)	298, 547
BsuRI	GGCC	1 cut(s)	800
BtrI	CACGTC	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	782
CaiI	CAGNNNCTG	2 cut(s)	640, 710
CseI	GACGC	1 cut(s)	372
Csp6I	GTAC	2 cut(s)	741, 885
CspCI	CAANNNNNGTGG	2 cut(s)	142, 177
CviQI	GTAC	2 cut(s)	741, 885
DdeI	CTNAG	2 cut(s)	646, 897
DpnI	GATC	3 cut(s)	72, 366, 483
DpnII	GATC	3 cut(s)	70, 364, 481
DraI	TTTAAA	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	798
Eam1104I	CTCTTC	3 cut(s)	99, 459, 861
EarI	CTCTTC	3 cut(s)	99, 459, 861
Eco32I	GATATC	1 cut(s)	375
Eco57I	CTGAAG	7 cut(s)	261, 440, 498, 513, 740, 842, 929
Eco88I	CYCGRG	1 cut(s)	937
EcoRI	GAATTC	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	586
EcoRV	GATATC	1 cut(s)	375
FaiI	YATR	7 cut(s)	276, 284, 371, 621, 659, 839, 893
Fnu4HI	GCNGC	2 cut(s)	207, 255
FokI	GGATG	1 cut(s)	789
Fsp4HI	GCNGC	2 cut(s)	207, 255
FspBI	CTAG	5 cut(s)	78, 188, 224, 405, 773
GluI	GCNGC	2 cut(s)	207, 255
GsuI	CTGGAG	2 cut(s)	441, 687
HaeIII	GGCC	1 cut(s)	800
HapII	CCGG	1 cut(s)	506
HgaI	GACGC	1 cut(s)	372
HindIII	AAGCTT	4 cut(s)	52, 678, 696, 809
HinfI	GANTC	6 cut(s)	6, 45, 311, 423, 568, 943
HpaII	CCGG	1 cut(s)	506
HphI	GGTGA	3 cut(s)	113, 176, 543
Hpy166II	GTNNAC	4 cut(s)	218, 410, 594, 743
Hpy188I	TCNGA	6 cut(s)	388, 492, 672, 712, 759, 861
Hpy188III	TCNNGA	2 cut(s)	154, 315
Hpy8I	GTNNAC	4 cut(s)	218, 410, 594, 743
HpyAV	CCTTC	3 cut(s)	236, 537, 564
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	5 cut(s)	206, 278, 300, 410, 634
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 263, 416
HpyF3I	CTNAG	2 cut(s)	646, 897
HpySE526I	ACGT	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	70, 364, 481
LguI	GCTCTTC	1 cut(s)	99
Lsp1109I	GCAGC	2 cut(s)	218, 241
LweI	GCATC	1 cut(s)	218
MaeI	CTAG	5 cut(s)	78, 188, 224, 405, 773
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	3 cut(s)	72, 366, 483
MboI	GATC	3 cut(s)	70, 364, 481
MflI	RGATCY	2 cut(s)	364, 481
MhlI	GDGCHC	2 cut(s)	412, 903
MluCI	AATT	6 cut(s)	13, 81, 148, 279, 544, 840
MlyI	GAGTC	3 cut(s)	320, 432, 577
MnlI	CCTC	5 cut(s)	92, 630, 664, 796, 946
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	8 cut(s)	12, 50, 123, 327, 449, 470, 915, 949
MslI	CAYNNNNRTG	2 cut(s)	748, 775
MspCI	CTTAAG	1 cut(s)	49
MspI	CCGG	1 cut(s)	506
MspR9I	CCNGG	2 cut(s)	506, 588
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	588
MvnI	CGCG	1 cut(s)	352
MwoI	GCNNNNNNNGC	3 cut(s)	203, 263, 416
NciI	CCSGG	1 cut(s)	506
NdeII	GATC	3 cut(s)	70, 364, 481
NmeAIII	GCCGAG	1 cut(s)	637
NmuCI	GTSAC	1 cut(s)	89
OliI	CACNNNNGTG	1 cut(s)	748
PciSI	GCTCTTC	1 cut(s)	99
PctI	GAATGC	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	3 cut(s)	6, 45, 943
PflMI	CCANNNNNTGG	2 cut(s)	419, 578
PkrI	GCNGC	2 cut(s)	208, 256
PleI	GAGTC	3 cut(s)	319, 431, 576
PpsI	GAGTC	3 cut(s)	319, 431, 576
PshBI	ATTAAT	1 cut(s)	915
Psp6I	CCWGG	1 cut(s)	586
PspGI	CCWGG	1 cut(s)	586
PstNI	CAGNNNCTG	2 cut(s)	640, 710
PsuI	RGATCY	2 cut(s)	364, 481
RsaI	GTAC	2 cut(s)	742, 886
RsaNI	GTAC	2 cut(s)	741, 885
RseI	CAYNNNNRTG	2 cut(s)	748, 775
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	8 cut(s)	12, 50, 123, 327, 449, 470, 915, 949
SatI	GCNGC	2 cut(s)	207, 255
Sau3AI	GATC	3 cut(s)	70, 364, 481
SchI	GAGTC	3 cut(s)	320, 432, 577
ScrFI	CCNGG	2 cut(s)	506, 588
SduI	GDGCHC	2 cut(s)	412, 903
SfaNI	GCATC	1 cut(s)	218
SmiMI	CAYNNNNRTG	2 cut(s)	748, 775
SmlI	CTYRAG	2 cut(s)	49, 812
SmoI	CTYRAG	2 cut(s)	49, 812
Sse9I	AATT	6 cut(s)	13, 81, 148, 279, 544, 840
SsiI	CCGC	1 cut(s)	350
SspMI	CTAG	5 cut(s)	78, 188, 224, 405, 773
StyD4I	CCNGG	2 cut(s)	504, 586
TaaI	ACNGT	1 cut(s)	496
TaiI	ACGT	1 cut(s)	223
TaqII	GACCGA	1 cut(s)	845
TasI	AATT	6 cut(s)	13, 81, 148, 279, 544, 840
TatI	WGTACW	2 cut(s)	740, 884
TfiI	GAWTC	3 cut(s)	6, 45, 943
Tru1I	TTAA	8 cut(s)	12, 50, 123, 327, 449, 470, 915, 949
Tru9I	TTAA	8 cut(s)	12, 50, 123, 327, 449, 470, 915, 949
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	2 cut(s)	206, 254
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	501
TspGWI	ACGGA	1 cut(s)	323
Van91I	CCANNNNNTGG	2 cut(s)	419, 578
Vha464I	CTTAAG	1 cut(s)	49
VneI	GTGCAC	1 cut(s)	408
VspI	ATTAAT	1 cut(s)	915
XapI	RAATTY	3 cut(s)	81, 148, 544
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	5 cut(s)	78, 188, 224, 405, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.