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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G17900 AT3G17900 |
| fragaria_vesca | FvH4_4g31960 FvH4_4g31960 FvH4_4g31960 FvH4_4g31960 FvH4_4g31960 |
| malus_domestica | MD13G1079000.v1.1 MD16G1078700.v1.1 |
| prunus_persica | Prupe.1G267800_v2.0.a1 Prupe.1G267800_v2.0.a1 |
| pyrus_communis | pycom13g06860 pycom16g06810 |
| rosa_chinensis | RchiOBHm_Chr1g0331861 RchiOBHm_Chr1g0331881 RchiOBHm_Chr1g0353921 RchiOBHm_Chr4g0440641 |
| rosa_laevigata | RLG00000006164 RLG00000029707 |
| rosa_multiflora | Rmu_co8243009.1_g000001 Rmu_sc0001915.1_g000004 Rmu_sc0005552.1_g000001 Rmu_sc0007658.1_g000002 Rmu_sc0008018.1_g000005 |
| rosa_roxburghii | Rroxscaffold_4G00301470 Rroxscaffold_5G00381450 |
| rosa_rugosa | Rorug01G0239400 Rorug04G0327100 |
| rosa_samantha | Rh1AG250900 Rh1BG221700 Rh1CG234700 Rh1DG248700 Rh4AG379000 Rh4BG391800 Rh4CG406300 |
| rosa_wichuraiana | Rw1G021890 Rw4G032550 Rw4G032590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1381 |
| Acc36I | ACCTGC | 1 cut(s) | 1381 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 417, 2138, 2297 |
| AccBSI | CCGCTC | 1 cut(s) | 462 |
| AccI | GTMKAC | 1 cut(s) | 1136 |
| AccII | CGCG | 2 cut(s) | 1512, 2071 |
| AccIII | TCCGGA | 3 cut(s) | 190, 302, 1171 |
| AciI | CCGC | 6 cut(s) | 102, 460, 824, 1389, 1619, 2069 |
| AclWI | GGATC | 7 cut(s) | 86, 704, 765, 890, 968, 1434, 2091 |
| AcoI | YGGCCR | 2 cut(s) | 2517, 2664 |
| AcsI | RAATTY | 6 cut(s) | 112, 967, 1602, 1801, 1867, 2263 |
| AfaI | GTAC | 8 cut(s) | 141, 150, 670, 1118, 1221, 2461, 2605, 2683 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 82, 417, 1301, 2138, 2297, 2447, 2515 |
| AflIII | ACRYGT | 2 cut(s) | 136, 145 |
| AjiI | CACGTC | 1 cut(s) | 1940 |
| AjnI | CCWGG | 2 cut(s) | 1555, 2305 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2142, 2174 |
| AleI | CACNNNNGTG | 1 cut(s) | 2467 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 471, 503 |
| Alw21I | GWGCWC | 2 cut(s) | 2131, 2622 |
| Alw26I | GTCTC | 5 cut(s) | 942, 1029, 1723, 2149, 2329 |
| Alw44I | GTGCAC | 1 cut(s) | 2127 |
| AlwI | GGATC | 7 cut(s) | 86, 704, 765, 890, 968, 1434, 2091 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2359, 2429 |
| Ama87I | CYCGRG | 1 cut(s) | 82 |
| Aor13HI | TCCGGA | 3 cut(s) | 190, 302, 1171 |
| AoxI | GGCC | 2 cut(s) | 2517, 2664 |
| ApaLI | GTGCAC | 1 cut(s) | 2127 |
| ApoI | RAATTY | 6 cut(s) | 112, 967, 1602, 1801, 1867, 2263 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 449, 481 |
| AseI | ATTAAT | 1 cut(s) | 2634 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 486, 741, 1868 |
| AspLEI | GCGC | 3 cut(s) | 89, 199, 1512 |
| AspS9I | GGNCC | 4 cut(s) | 12, 221, 457, 1174 |
| AsuC2I | CCSGG | 2 cut(s) | 477, 2225 |
| AsuHPI | GGTGA | 7 cut(s) | 64, 695, 845, 1069, 1832, 1895, 2262 |
| AsuII | TTCGAA | 2 cut(s) | 748, 2183 |
| AvaI | CYCGRG | 1 cut(s) | 82 |
| AvaII | GGWCC | 4 cut(s) | 12, 221, 457, 1174 |
| BaeGI | GKGCMC | 1 cut(s) | 2131 |
| BalI | TGGCCA | 1 cut(s) | 2666 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1120, 1152 |
| BbsI | GAAGAC | 3 cut(s) | 864, 1425, 1958 |
| Bbv12I | GWGCWC | 2 cut(s) | 2131, 2622 |
| BbvCI | CCTCAGC | 1 cut(s) | 2701 |
| BccI | CCATC | 5 cut(s) | 883, 1469, 1560, 2531, 2546 |
| BceAI | ACGGC | 1 cut(s) | 2532 |
| BciT130I | CCWGG | 2 cut(s) | 1557, 2307 |
| BciVI | GTATCC | 3 cut(s) | 517, 2017, 2266 |
| BclI | TGATCA | 3 cut(s) | 3, 57, 280 |
| BcnI | CCSGG | 2 cut(s) | 477, 2225 |
| BcoDI | GTCTC | 5 cut(s) | 942, 1029, 1723, 2149, 2329 |
| BfaI | CTAG | 7 cut(s) | 129, 732, 1907, 1943, 2124, 2442, 2492 |
| BfmI | CTRYAG | 3 cut(s) | 555, 1137, 1596 |
| BfoI | RGCGCY | 1 cut(s) | 90 |
| BfuAI | ACCTGC | 1 cut(s) | 1381 |
| BfuI | GTATCC | 3 cut(s) | 517, 2017, 2266 |
| BglII | AGATCT | 1 cut(s) | 2200 |
| BlpI | GCTNAGC | 1 cut(s) | 162 |
| Bme1390I | CCNGG | 4 cut(s) | 477, 1557, 2225, 2307 |
| Bme18I | GGWCC | 4 cut(s) | 12, 221, 457, 1174 |
| BmeT110I | CYCGRG | 1 cut(s) | 82 |
| BmgBI | CACGTC | 1 cut(s) | 1940 |
| BmgT120I | GGNCC | 4 cut(s) | 12, 221, 457, 1174 |
| BmiI | GGNNCC | 2 cut(s) | 919, 1176 |
| BmrFI | CCNGG | 4 cut(s) | 477, 1557, 2225, 2307 |
| BmrI | ACTGGG | 1 cut(s) | 1432 |
| BmsI | GCATC | 5 cut(s) | 364, 415, 1554, 1693, 1937 |
| BmuI | ACTGGG | 1 cut(s) | 1432 |
| BpiI | GAAGAC | 3 cut(s) | 864, 1425, 1958 |
| BpmI | CTGGAG | 4 cut(s) | 251, 1215, 2160, 2406 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1146, 2616, 2701 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 162 |
| Bpu14I | TTCGAA | 2 cut(s) | 748, 2183 |
| BpuEI | CTTGAG | 1 cut(s) | 2552 |
| BpuMI | CCSGG | 2 cut(s) | 477, 2225 |
| BsaBI | GATNNNNATC | 1 cut(s) | 255 |
| BsaJI | CCNNGG | 3 cut(s) | 2223, 2306, 2673 |
| BsaWI | WCCGGW | 6 cut(s) | 75, 190, 302, 430, 1171, 1301 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 471, 501, 1026, 1056 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 82, 417, 1301, 2138, 2297, 2447, 2515 |
| Bse118I | RCCGGY | 3 cut(s) | 151, 169, 1391 |
| Bse1I | ACTGG | 5 cut(s) | 325, 1427, 1882, 1990, 2423 |
| Bse3DI | GCAATG | 1 cut(s) | 500 |
| Bse8I | GATNNNNATC | 1 cut(s) | 255 |
| BseAI | TCCGGA | 3 cut(s) | 190, 302, 1171 |
| BseBI | CCWGG | 2 cut(s) | 1557, 2307 |
| BseDI | CCNNGG | 3 cut(s) | 2223, 2306, 2673 |
| BseGI | GGATG | 5 cut(s) | 376, 727, 898, 1298, 2501 |
| BseJI | GATNNNNATC | 1 cut(s) | 255 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 82, 417, 1301, 2138, 2297, 2447, 2515 |
| BseMI | GCAATG | 1 cut(s) | 500 |
| BseMII | CTCAG | 9 cut(s) | 153, 876, 1160, 1322, 1713, 1825, 2379, 2607, 2715 |
| BseNI | ACTGG | 5 cut(s) | 325, 1427, 1882, 1990, 2423 |
| BseRI | GAGGAG | 4 cut(s) | 1218, 1239, 1585, 1739 |
| BseSI | GKGCMC | 1 cut(s) | 2131 |
| BsgI | GTGCAG | 2 cut(s) | 8, 1359 |
| Bsh1236I | CGCG | 2 cut(s) | 1512, 2071 |
| Bsh1285I | CGRYCG | 2 cut(s) | 76, 2069 |
| BshFI | GGCC | 2 cut(s) | 2519, 2666 |
| BsiEI | CGRYCG | 2 cut(s) | 76, 2069 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2131, 2622 |
| BsiHKCI | CYCGRG | 1 cut(s) | 82 |
| BslFI | GGGAC | 2 cut(s) | 118, 823 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 82, 417, 1301, 2138, 2297, 2447, 2515 |
| BsmAI | GTCTC | 5 cut(s) | 942, 1029, 1723, 2149, 2329 |
| BsmFI | GGGAC | 2 cut(s) | 118, 823 |
| BsmI | GAATGC | 1 cut(s) | 1828 |
| BsnI | GGCC | 2 cut(s) | 2519, 2666 |
| BsoBI | CYCGRG | 1 cut(s) | 82 |
| Bsp119I | TTCGAA | 2 cut(s) | 748, 2183 |
| Bsp1286I | GDGCHC | 2 cut(s) | 2131, 2622 |
| Bsp13I | TCCGGA | 3 cut(s) | 190, 302, 1171 |
| Bsp1407I | TGTACA | 2 cut(s) | 139, 2459 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 162 |
| BspACI | CCGC | 6 cut(s) | 102, 460, 824, 1389, 1619, 2069 |
| BspANI | GGCC | 2 cut(s) | 2519, 2666 |
| BspCNI | CTCAG | 9 cut(s) | 154, 877, 1159, 1321, 1714, 1824, 2378, 2608, 2714 |
| BspEI | TCCGGA | 3 cut(s) | 190, 302, 1171 |
| BspFNI | CGCG | 2 cut(s) | 1512, 2071 |
| BspHI | TCATGA | 1 cut(s) | 358 |
| BspLI | GGNNCC | 2 cut(s) | 919, 1176 |
| BspMAI | CTGCAG | 1 cut(s) | 559 |
| BspMI | ACCTGC | 1 cut(s) | 1381 |
| BspPI | GGATC | 7 cut(s) | 86, 704, 765, 890, 968, 1434, 2091 |
| BspQI | GCTCTTC | 1 cut(s) | 1818 |
| BspT104I | TTCGAA | 2 cut(s) | 748, 2183 |
| BsrBI | CCGCTC | 1 cut(s) | 462 |
| BsrDI | GCAATG | 1 cut(s) | 500 |
| BsrFI | RCCGGY | 3 cut(s) | 151, 169, 1391 |
| BsrGI | TGTACA | 2 cut(s) | 139, 2459 |
| BsrI | ACTGG | 5 cut(s) | 325, 1427, 1882, 1990, 2423 |
| BssAI | RCCGGY | 3 cut(s) | 151, 169, 1391 |
| BssECI | CCNNGG | 3 cut(s) | 2223, 2306, 2673 |
| Bst2UI | CCWGG | 2 cut(s) | 1557, 2307 |
| Bst4CI | ACNGT | 5 cut(s) | 52, 264, 1121, 1746, 2215 |
| Bst6I | CTCTTC | 4 cut(s) | 1448, 1818, 2178, 2580 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2135 |
| BstAUI | TGTACA | 2 cut(s) | 139, 2459 |
| BstBI | TTCGAA | 2 cut(s) | 748, 2183 |
| BstF5I | GGATG | 5 cut(s) | 376, 727, 898, 1298, 2501 |
| BstFNI | CGCG | 2 cut(s) | 1512, 2071 |
| BstH2I | RGCGCY | 1 cut(s) | 90 |
| BstHHI | GCGC | 3 cut(s) | 89, 199, 1512 |
| BstMAI | GTCTC | 5 cut(s) | 942, 1029, 1723, 2149, 2329 |
| BstMCI | CGRYCG | 2 cut(s) | 76, 2069 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1922, 1982, 2135 |
| BstNI | CCWGG | 2 cut(s) | 1557, 2307 |
| BstNSI | RCATGY | 3 cut(s) | 140, 516, 1679 |
| BstSCI | CCNGG | 4 cut(s) | 475, 1555, 2223, 2305 |
| BstSFI | CTRYAG | 3 cut(s) | 555, 1137, 1596 |
| BstSLI | GKGCMC | 1 cut(s) | 2131 |
| BstUI | CGCG | 2 cut(s) | 1512, 2071 |
| BstV2I | GAAGAC | 3 cut(s) | 864, 1425, 1958 |
| BstX2I | RGATCY | 3 cut(s) | 78, 2083, 2200 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2061 |
| BstYI | RGATCY | 3 cut(s) | 78, 2083, 2200 |
| BsuI | GTATCC | 3 cut(s) | 517, 2017, 2266 |
| BsuRI | GGCC | 2 cut(s) | 2519, 2666 |
| BtrI | CACGTC | 1 cut(s) | 1940 |
| BtsCI | GGATG | 5 cut(s) | 376, 727, 898, 1298, 2501 |
| BtsIMutI | CAGTG | 1 cut(s) | 318 |
| BveI | ACCTGC | 1 cut(s) | 1381 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2359, 2429 |
| CciI | TCATGA | 1 cut(s) | 358 |
| CfoI | GCGC | 3 cut(s) | 89, 199, 1512 |
| Cfr10I | RCCGGY | 3 cut(s) | 151, 169, 1391 |
| Cfr13I | GGNCC | 4 cut(s) | 12, 221, 457, 1174 |
| CseI | GACGC | 1 cut(s) | 2091 |
| Csp6I | GTAC | 8 cut(s) | 140, 149, 669, 1117, 1220, 2460, 2604, 2682 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1671, 1706, 1861, 1896 |
| CviAII | CATG | 9 cut(s) | 137, 359, 513, 1179, 1339, 1676, 2650, 2657, 2662 |
| CviQI | GTAC | 8 cut(s) | 140, 149, 669, 1117, 1220, 2460, 2604, 2682 |
| DraI | TTTAAA | 2 cut(s) | 547, 2047 |
| EaeI | YGGCCR | 2 cut(s) | 2517, 2664 |
| Eam1104I | CTCTTC | 4 cut(s) | 1448, 1818, 2178, 2580 |
| EarI | CTCTTC | 4 cut(s) | 1448, 1818, 2178, 2580 |
| Eco32I | GATATC | 1 cut(s) | 2094 |
| Eco47I | GGWCC | 4 cut(s) | 12, 221, 457, 1174 |
| Eco88I | CYCGRG | 1 cut(s) | 82 |
| EcoRI | GAATTC | 1 cut(s) | 2263 |
| EcoRII | CCWGG | 2 cut(s) | 1555, 2305 |
| EcoRV | GATATC | 1 cut(s) | 2094 |
| EcoT22I | ATGCAT | 1 cut(s) | 934 |
| FaeI | CATG | 9 cut(s) | 140, 362, 516, 1182, 1342, 1679, 2653, 2660, 2665 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1391, 1423, 1960, 1992 |
| FaqI | GGGAC | 2 cut(s) | 118, 823 |
| FatI | CATG | 9 cut(s) | 136, 358, 512, 1178, 1338, 1675, 2649, 2656, 2661 |
| FauI | CCCGC | 1 cut(s) | 95 |
| FbaI | TGATCA | 3 cut(s) | 3, 57, 280 |
| FblI | GTMKAC | 1 cut(s) | 1136 |
| FokI | GGATG | 5 cut(s) | 383, 734, 905, 1285, 2508 |
| FspBI | CTAG | 7 cut(s) | 129, 732, 1907, 1943, 2124, 2442, 2492 |
| GlaI | GCGC | 3 cut(s) | 88, 198, 1511 |
| GsuI | CTGGAG | 4 cut(s) | 251, 1215, 2160, 2406 |
| HaeII | RGCGCY | 1 cut(s) | 90 |
| HaeIII | GGCC | 2 cut(s) | 2519, 2666 |
| HgaI | GACGC | 1 cut(s) | 2091 |
| HhaI | GCGC | 3 cut(s) | 89, 199, 1512 |
| Hin1II | CATG | 9 cut(s) | 140, 362, 516, 1182, 1342, 1679, 2653, 2660, 2665 |
| Hin6I | GCGC | 3 cut(s) | 87, 197, 1510 |
| HinP1I | GCGC | 3 cut(s) | 87, 197, 1510 |
| HincII | GTYRAC | 1 cut(s) | 134 |
| HindII | GTYRAC | 1 cut(s) | 134 |
| HindIII | AAGCTT | 4 cut(s) | 1405, 2397, 2415, 2528 |
| HphI | GGTGA | 7 cut(s) | 64, 695, 845, 1069, 1832, 1895, 2262 |
| HpyAV | CCTTC | 8 cut(s) | 371, 697, 752, 1535, 1649, 1955, 2256, 2283 |
| HpyCH4III | ACNGT | 5 cut(s) | 52, 264, 1121, 1746, 2215 |
| HpyCH4IV | ACGT | 5 cut(s) | 145, 285, 363, 1218, 1939 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1922, 1982, 2135 |
| HpySE526I | ACGT | 5 cut(s) | 145, 285, 363, 1218, 1939 |
| Hsp92II | CATG | 9 cut(s) | 140, 362, 516, 1182, 1342, 1679, 2653, 2660, 2665 |
| HspAI | GCGC | 3 cut(s) | 87, 197, 1510 |
| Kpn2I | TCCGGA | 3 cut(s) | 190, 302, 1171 |
| Ksp22I | TGATCA | 3 cut(s) | 3, 57, 280 |
| LguI | GCTCTTC | 1 cut(s) | 1818 |
| LmnI | GCTCC | 2 cut(s) | 467, 1507 |
| LweI | GCATC | 5 cut(s) | 364, 415, 1554, 1693, 1937 |
| MaeI | CTAG | 7 cut(s) | 129, 732, 1907, 1943, 2124, 2442, 2492 |
| MaeII | ACGT | 5 cut(s) | 145, 285, 363, 1218, 1939 |
| MaeIII | GTNAC | 2 cut(s) | 1331, 1784 |
| MbiI | CCGCTC | 1 cut(s) | 462 |
| MfeI | CAATTG | 2 cut(s) | 273, 1761 |
| MflI | RGATCY | 3 cut(s) | 78, 2083, 2200 |
| MhlI | GDGCHC | 2 cut(s) | 2131, 2622 |
| MlsI | TGGCCA | 1 cut(s) | 2666 |
| MluNI | TGGCCA | 1 cut(s) | 2666 |
| MlyI | GAGTC | 7 cut(s) | 329, 836, 845, 1465, 2039, 2151, 2296 |
| MmeI | TCCRAC | 1 cut(s) | 268 |
| Mox20I | TGGCCA | 1 cut(s) | 2666 |
| Mph1103I | ATGCAT | 1 cut(s) | 934 |
| MroI | TCCGGA | 3 cut(s) | 190, 302, 1171 |
| MroXI | GAANNNNTTC | 3 cut(s) | 486, 741, 1868 |
| MscI | TGGCCA | 1 cut(s) | 2666 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2467, 2494 |
| Msp20I | TGGCCA | 1 cut(s) | 2666 |
| MspR9I | CCNGG | 4 cut(s) | 477, 1557, 2225, 2307 |
| MunI | CAATTG | 2 cut(s) | 273, 1761 |
| Mva1269I | GAATGC | 1 cut(s) | 1828 |
| MvaI | CCWGG | 2 cut(s) | 1557, 2307 |
| MvnI | CGCG | 2 cut(s) | 1512, 2071 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1922, 1982, 2135 |
| NciI | CCSGG | 2 cut(s) | 477, 2225 |
| NlaIII | CATG | 9 cut(s) | 140, 362, 516, 1182, 1342, 1679, 2653, 2660, 2665 |
| NlaIV | GGNNCC | 2 cut(s) | 919, 1176 |
| NmeAIII | GCCGAG | 1 cut(s) | 2356 |
| NmuCI | GTSAC | 1 cut(s) | 1784 |
| NsiI | ATGCAT | 1 cut(s) | 934 |
| NspI | RCATGY | 3 cut(s) | 140, 516, 1679 |
| NspV | TTCGAA | 2 cut(s) | 748, 2183 |
| OliI | CACNNNNGTG | 1 cut(s) | 2467 |
| PagI | TCATGA | 1 cut(s) | 358 |
| PaqCI | CACCTGC | 1 cut(s) | 1381 |
| PciI | ACATGT | 1 cut(s) | 136 |
| PciSI | GCTCTTC | 1 cut(s) | 1818 |
| PctI | GAATGC | 1 cut(s) | 1828 |
| PdmI | GAANNNNTTC | 3 cut(s) | 486, 741, 1868 |
| PfeI | GAWTC | 8 cut(s) | 251, 299, 391, 737, 857, 878, 1099, 2653 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 417, 2138, 2297 |
| PfoI | TCCNGGA | 1 cut(s) | 475 |
| PleI | GAGTC | 7 cut(s) | 329, 835, 844, 1464, 2038, 2150, 2295 |
| PpsI | GAGTC | 7 cut(s) | 329, 835, 844, 1464, 2038, 2150, 2295 |
| PscI | ACATGT | 1 cut(s) | 136 |
| PshBI | ATTAAT | 1 cut(s) | 2634 |
| Psp6I | CCWGG | 2 cut(s) | 1555, 2305 |
| PspGI | CCWGG | 2 cut(s) | 1555, 2305 |
| PspN4I | GGNNCC | 2 cut(s) | 919, 1176 |
| PspPI | GGNCC | 4 cut(s) | 12, 221, 457, 1174 |
| PstI | CTGCAG | 1 cut(s) | 559 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2359, 2429 |
| PsuI | RGATCY | 3 cut(s) | 78, 2083, 2200 |
| RsaI | GTAC | 8 cut(s) | 141, 150, 670, 1118, 1221, 2461, 2605, 2683 |
| RsaNI | GTAC | 8 cut(s) | 140, 149, 669, 1117, 1220, 2460, 2604, 2682 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2467, 2494 |
| SapI | GCTCTTC | 1 cut(s) | 1818 |
| Sau96I | GGNCC | 4 cut(s) | 12, 221, 457, 1174 |
| SchI | GAGTC | 7 cut(s) | 329, 836, 845, 1465, 2039, 2151, 2296 |
| ScrFI | CCNGG | 4 cut(s) | 477, 1557, 2225, 2307 |
| SduI | GDGCHC | 2 cut(s) | 2131, 2622 |
| SfaNI | GCATC | 5 cut(s) | 364, 415, 1554, 1693, 1937 |
| SfcI | CTRYAG | 3 cut(s) | 555, 1137, 1596 |
| SfuI | TTCGAA | 2 cut(s) | 748, 2183 |
| SinI | GGWCC | 4 cut(s) | 12, 221, 457, 1174 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2467, 2494 |
| SmlI | CTYRAG | 1 cut(s) | 2531 |
| SmoI | CTYRAG | 1 cut(s) | 2531 |
| SsiI | CCGC | 6 cut(s) | 102, 460, 824, 1389, 1619, 2069 |
| SspI | AATATT | 2 cut(s) | 780, 1687 |
| SspMI | CTAG | 7 cut(s) | 129, 732, 1907, 1943, 2124, 2442, 2492 |
| StyD4I | CCNGG | 4 cut(s) | 475, 1555, 2223, 2305 |
| TaaI | ACNGT | 5 cut(s) | 52, 264, 1121, 1746, 2215 |
| TaiI | ACGT | 5 cut(s) | 148, 288, 366, 1221, 1942 |
| TaqI | TCGA | 3 cut(s) | 748, 1492, 2183 |
| TaqII | GACCGA | 1 cut(s) | 2564 |
| TatI | WGTACW | 3 cut(s) | 139, 2459, 2681 |
| TauI | GCSGC | 1 cut(s) | 1391 |
| TfiI | GAWTC | 8 cut(s) | 251, 299, 391, 737, 857, 878, 1099, 2653 |
| TscAI | CASTG | 1 cut(s) | 325 |
| TseFI | GTSAC | 1 cut(s) | 1784 |
| Tsp45I | GTSAC | 1 cut(s) | 1784 |
| TspGWI | ACGGA | 2 cut(s) | 1738, 2042 |
| TspRI | CASTG | 1 cut(s) | 325 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 417, 2138, 2297 |
| VneI | GTGCAC | 1 cut(s) | 2127 |
| VpaK11BI | GGWCC | 4 cut(s) | 12, 221, 457, 1174 |
| VspI | ATTAAT | 1 cut(s) | 2634 |
| XapI | RAATTY | 6 cut(s) | 112, 967, 1602, 1801, 1867, 2263 |
| XceI | RCATGY | 3 cut(s) | 140, 516, 1679 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1563 |
| XmiI | GTMKAC | 1 cut(s) | 1136 |
| XmnI | GAANNNNTTC | 3 cut(s) | 486, 741, 1868 |
| XspI | CTAG | 7 cut(s) | 129, 732, 1907, 1943, 2124, 2442, 2492 |
| Zsp2I | ATGCAT | 1 cut(s) | 934 |