Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003049

Physical Location & Seq

Genomic Coordinates Reverse (-)

4412136 .. 4414271

Gene Structure 2136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGATCGATCCATTCCATACAAAGAACTCCCTGATAATTGGAATGATGCACCGGATATACAGTCATTACGCTCTCTGGACCGGTCCTTTGTTTTCCCTGGTGAACAAGTCCATGTCCTTGCATGCTTGTCAGCGTGTAAGCAGGACACAGAAATTATCACTCCCTTTAAATTAGCTGCAGCCATGAGTAAAAATGGCTTAAGACTCAGCCCAAAGAAACAAAATGGAAATGTGGAAGATGGCAATGGTACATTGTTGGGAAAGGGAGATATGAGTCCTGATAGTCAAGGTGCAGATCATAATGGTGAAACCCTTTCAAAGGAGAAGACTGGTTCACAAAAGGATGTTTCTGCTAGTGAATCTCTTCTCAGAATGGAGGATCACAAGAGACAGGCGGAAATTTTATTGCAAAGATTTGAGAGTTCTCATTTTTTTGTTAGGATTGCAGACTCAAGTGAGGCACTTTGGGCAAAAAAAGGTACTTCTAAGAAGTCTTCAGAATCGGTTGATGTGGATGGTCAAGAGTCCACGGAAGATGGAACCCAGAAAACTGCAGTAAATGCCATTATTGATAAAGGGAATTTTGATCCCAATGTCTCTGGAGGCGTAGCAAGAAATAATGTCAAGTGTTGCTCTCTTTCTAATGGAGACATAGTGGTTCTTTTACAAGTGAATGTTGGCATAGATTTTTTGAATGACCCTGTTATTGAGATTCTTCAGTTTGAGAAATATCGTGAGAGAAGTTTGTTTGCTGAGACTCAGGACAACTTAGTTGATGCAAATCAGGACCCGTGTGGAGAATTGTTGAAATGGTTGCTCCCTTTGGATAACACCCTTCCACCTCCAGCTCGCCCTTTATCTCCTGCTTTAACTTCCAATTCAGGAATTGGTAGCACATCTCAAAAATCTGGTTCTCAACTCTTCTCCCATTTTAGAAGTTACTCCATGTCATCATTACCACAAAATACTACTCCACCACCCGCACCTATTAAAGCTGCAAGTTCTAAGCCAAGCTTTGATCGATCATTGAAGACTGGGATCAGAATTCATCTCAGAAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

355

Amino Acids

38.56

Weight (kDa)

5.77

Isoelectric Point (pI)

55.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17900 AT3G17900
fragaria_vesca	FvH4_4g31960 FvH4_4g31960 FvH4_4g31960 FvH4_4g31960 FvH4_4g31960
malus_domestica	MD13G1079000.v1.1 MD16G1078700.v1.1
prunus_persica	Prupe.1G267800_v2.0.a1 Prupe.1G267800_v2.0.a1
pyrus_communis	pycom13g06860 pycom16g06810
rosa_chinensis	RchiOBHm_Chr1g0331861 RchiOBHm_Chr1g0331881 RchiOBHm_Chr1g0353921 RchiOBHm_Chr4g0440641
rosa_laevigata	RLG00000006164 RLG00000029707
rosa_multiflora	Rmu_co8243009.1_g000001 Rmu_sc0001915.1_g000004 Rmu_sc0005552.1_g000001 Rmu_sc0007658.1_g000002 Rmu_sc0008018.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301470 Rroxscaffold_5G00381450
rosa_rugosa	Rorug01G0239400 Rorug04G0327100
rosa_samantha	Rh1AG250900 Rh1BG221700 Rh1CG234700 Rh1DG248700 Rh4AG379000 Rh4BG391800 Rh4CG406300
rosa_wichuraiana	Rw1G021890 Rw4G032550 Rw4G032590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	395, 981
AclWI	GGATC	5 cut(s)	3, 12, 387, 581, 1046
AcsI	RAATTY	3 cut(s)	399, 580, 1044
AcuI	CTGAAG	2 cut(s)	480, 701
AfaI	GTAC	2 cut(s)	250, 481
AfiI	CCNNNNNNNGG	1 cut(s)	319
AflII	CTTAAG	1 cut(s)	199
AgeI	ACCGGT	1 cut(s)	81
AgsI	TTSAA	4 cut(s)	318, 694, 808, 1030
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	4 cut(s)	176, 848, 995, 1014
AluI	AGCT	4 cut(s)	176, 848, 995, 1014
Alw26I	GTCTC	4 cut(s)	382, 601, 642, 749
AlwI	GGATC	5 cut(s)	3, 12, 387, 581, 1046
ApeKI	GCWGC	3 cut(s)	176, 179, 995
ApoI	RAATTY	3 cut(s)	399, 580, 1044
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
AsiGI	ACCGGT	1 cut(s)	81
Asp700I	GAANNNNTTC	1 cut(s)	363
AspS9I	GGNCC	3 cut(s)	79, 84, 787
AsuHPI	GGTGA	2 cut(s)	113, 317
AvaII	GGWCC	3 cut(s)	79, 84, 787
BbsI	GAAGAC	3 cut(s)	332, 486, 1037
BbvI	GCAGC	3 cut(s)	163, 191, 982
BccI	CCATC	3 cut(s)	233, 509, 530
BciT130I	CCWGG	1 cut(s)	99
BcoDI	GTCTC	4 cut(s)	382, 601, 642, 749
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	2 cut(s)	177, 552
BfrI	CTTAAG	1 cut(s)	199
BisI	GCNGC	3 cut(s)	177, 180, 996
BlsI	GCNGC	3 cut(s)	178, 181, 997
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	3 cut(s)	79, 84, 787
BmgT120I	GGNCC	3 cut(s)	79, 84, 787
BmiI	GGNNCC	2 cut(s)	541, 789
BmrFI	CCNGG	1 cut(s)	99
BmrI	ACTGGG	1 cut(s)	1044
BmsI	GCATC	2 cut(s)	37, 766
BmuI	ACTGGG	1 cut(s)	1044
BpiI	GAAGAC	3 cut(s)	332, 486, 1037
BpmI	CTGGAG	2 cut(s)	621, 828
BpuEI	CTTGAG	1 cut(s)	436
Bsa29I	ATCGAT	2 cut(s)	7, 1021
BsaBI	GATNNNNATC	1 cut(s)	780
BsaJI	CCNNGG	2 cut(s)	97, 528
BsaWI	WCCGGW	2 cut(s)	52, 81
BsaXI	ACNNNNNCTCC	2 cut(s)	639, 669
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse118I	RCCGGY	1 cut(s)	81
Bse1I	ACTGG	2 cut(s)	334, 1039
Bse3DI	GCAATG	1 cut(s)	250
Bse8I	GATNNNNATC	1 cut(s)	780
BseBI	CCWGG	1 cut(s)	99
BseCI	ATCGAT	2 cut(s)	7, 1021
BseDI	CCNNGG	2 cut(s)	97, 528
BseGI	GGATG	2 cut(s)	349, 520
BseJI	GATNNNNATC	1 cut(s)	780
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	4 cut(s)	220, 382, 744, 773
BseNI	ACTGG	2 cut(s)	334, 1039
BseXI	GCAGC	3 cut(s)	163, 191, 982
BsgI	GTGCAG	1 cut(s)	312
BshTI	ACCGGT	1 cut(s)	81
BshVI	ATCGAT	2 cut(s)	7, 1021
BsiSI	CCGG	2 cut(s)	53, 82
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	4 cut(s)	382, 601, 642, 749
Bsp143I	GATC	8 cut(s)	4, 8, 295, 379, 586, 1018, 1022, 1038
BspACI	CCGC	2 cut(s)	395, 981
BspCNI	CTCAG	5 cut(s)	219, 381, 745, 772, 1065
BspDI	ATCGAT	2 cut(s)	7, 1021
BspLI	GGNNCC	2 cut(s)	541, 789
BspMAI	CTGCAG	2 cut(s)	181, 556
BspPI	GGATC	5 cut(s)	3, 12, 387, 581, 1046
BspTI	CTTAAG	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	81
BsrI	ACTGG	2 cut(s)	334, 1039
BssAI	RCCGGY	1 cut(s)	81
BssECI	CCNNGG	2 cut(s)	97, 528
BssMI	GATC	8 cut(s)	4, 8, 295, 379, 586, 1018, 1022, 1038
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	63
Bst6I	CTCTTC	2 cut(s)	369, 926
BstAFI	CTTAAG	1 cut(s)	199
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstC8I	GCNNGC	2 cut(s)	124, 850
BstDEI	CTNAG	8 cut(s)	206, 368, 486, 753, 759, 769, 1005, 1052
BstDSI	CCRYGG	1 cut(s)	528
BstENI	CCTNNNNNAGG	1 cut(s)	317
BstF5I	GGATG	2 cut(s)	349, 520
BstKTI	GATC	8 cut(s)	7, 11, 298, 382, 589, 1021, 1025, 1041
BstMAI	GTCTC	4 cut(s)	382, 601, 642, 749
BstMBI	GATC	8 cut(s)	4, 8, 295, 379, 586, 1018, 1022, 1038
BstMWI	GCNNNNNNNGC	2 cut(s)	467, 560
BstNI	CCWGG	1 cut(s)	99
BstNSI	RCATGY	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	97
BstSFI	CTRYAG	2 cut(s)	177, 552
BstV1I	GCAGC	3 cut(s)	163, 191, 982
BstV2I	GAAGAC	3 cut(s)	332, 486, 1037
Bsu15I	ATCGAT	2 cut(s)	7, 1021
BsuTUI	ATCGAT	2 cut(s)	7, 1021
BtgI	CCRYGG	1 cut(s)	528
BtsCI	GGATG	2 cut(s)	349, 520
Cac8I	GCNNGC	2 cut(s)	124, 850
Cfr10I	RCCGGY	1 cut(s)	81
Cfr13I	GGNCC	3 cut(s)	79, 84, 787
ClaI	ATCGAT	2 cut(s)	7, 1021
Csp6I	GTAC	2 cut(s)	249, 480
CspAI	ACCGGT	1 cut(s)	81
CviAII	CATG	4 cut(s)	113, 123, 184, 946
CviJI	RGCY	8 cut(s)	176, 182, 198, 210, 848, 995, 1009, 1014
CviKI_1	RGCY	8 cut(s)	176, 182, 198, 210, 848, 995, 1009, 1014
CviQI	GTAC	2 cut(s)	249, 480
DdeI	CTNAG	8 cut(s)	206, 368, 486, 753, 759, 769, 1005, 1052
DpnI	GATC	8 cut(s)	6, 10, 297, 381, 588, 1020, 1024, 1040
DpnII	GATC	8 cut(s)	4, 8, 295, 379, 586, 1018, 1022, 1038
DraI	TTTAAA	1 cut(s)	169
Eam1104I	CTCTTC	2 cut(s)	369, 926
EarI	CTCTTC	2 cut(s)	369, 926
EciI	GGCGGA	1 cut(s)	410
Eco47I	GGWCC	3 cut(s)	79, 84, 787
Eco57I	CTGAAG	2 cut(s)	480, 701
EcoNI	CCTNNNNNAGG	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	787
EcoRI	GAATTC	1 cut(s)	1044
EcoRII	CCWGG	1 cut(s)	97
FaeI	CATG	4 cut(s)	116, 126, 187, 949
FalI	AAGNNNNNCTT	2 cut(s)	998, 1030
FatI	CATG	4 cut(s)	112, 122, 183, 945
FauI	CCCGC	1 cut(s)	988
Fnu4HI	GCNGC	3 cut(s)	177, 180, 996
FokI	GGATG	2 cut(s)	356, 527
Fsp4HI	GCNGC	3 cut(s)	177, 180, 996
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	3 cut(s)	177, 180, 996
GsuI	CTGGAG	2 cut(s)	621, 828
HapII	CCGG	2 cut(s)	53, 82
Hin1II	CATG	4 cut(s)	116, 126, 187, 949
HindIII	AAGCTT	1 cut(s)	1012
HinfI	GANTC	8 cut(s)	204, 274, 359, 449, 500, 524, 712, 757
HpaII	CCGG	2 cut(s)	53, 82
HphI	GGTGA	2 cut(s)	113, 317
Hpy166II	GTNNAC	3 cut(s)	104, 335, 528
Hpy188I	TCNGA	4 cut(s)	371, 499, 1043, 1055
Hpy188III	TCNNGA	9 cut(s)	77, 278, 521, 600, 734, 761, 785, 882, 1062
Hpy8I	GTNNAC	3 cut(s)	104, 335, 528
HpyAV	CCTTC	1 cut(s)	845
HpyCH4III	ACNGT	1 cut(s)	63
HpyCH4V	TGCA	9 cut(s)	50, 122, 179, 293, 409, 446, 554, 779, 998
HpyF10VI	GCNNNNNNNGC	2 cut(s)	467, 560
HpyF3I	CTNAG	8 cut(s)	206, 368, 486, 753, 759, 769, 1005, 1052
Hsp92II	CATG	4 cut(s)	116, 126, 187, 949
Kzo9I	GATC	8 cut(s)	4, 8, 295, 379, 586, 1018, 1022, 1038
LmnI	GCTCC	1 cut(s)	822
Lsp1109I	GCAGC	3 cut(s)	163, 191, 982
LweI	GCATC	2 cut(s)	37, 766
MaeI	CTAG	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	938
MalI	GATC	8 cut(s)	6, 10, 297, 381, 588, 1020, 1024, 1040
MboI	GATC	8 cut(s)	4, 8, 295, 379, 586, 1018, 1022, 1038
MboII	GAAGA	8 cut(s)	248, 337, 356, 486, 545, 707, 913, 1042
MluCI	AATT	9 cut(s)	37, 153, 170, 399, 580, 800, 877, 885, 1044
MlyI	GAGTC	5 cut(s)	198, 283, 443, 533, 751
MnlI	CCTC	4 cut(s)	370, 451, 596, 852
MroXI	GAANNNNTTC	1 cut(s)	363
MseI	TTAA	4 cut(s)	168, 200, 869, 990
MslI	CAYNNNNRTG	1 cut(s)	303
MspCI	CTTAAG	1 cut(s)	199
MspI	CCGG	2 cut(s)	53, 82
MspR9I	CCNGG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	2 cut(s)	467, 560
NdeII	GATC	8 cut(s)	4, 8, 295, 379, 586, 1018, 1022, 1038
NlaIII	CATG	4 cut(s)	116, 126, 187, 949
NlaIV	GGNNCC	2 cut(s)	541, 789
NspI	RCATGY	1 cut(s)	126
PaeI	GCATGC	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	3 cut(s)	359, 500, 712
PinAI	ACCGGT	1 cut(s)	81
PkrI	GCNGC	3 cut(s)	178, 181, 997
PleI	GAGTC	5 cut(s)	198, 282, 443, 532, 751
PpsI	GAGTC	5 cut(s)	198, 282, 443, 532, 751
PpuMI	RGGWCCY	1 cut(s)	787
Psp5II	RGGWCCY	1 cut(s)	787
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	541, 789
PspPI	GGNCC	3 cut(s)	79, 84, 787
PspPPI	RGGWCCY	1 cut(s)	787
PstI	CTGCAG	2 cut(s)	181, 556
RsaI	GTAC	2 cut(s)	250, 481
RsaNI	GTAC	2 cut(s)	249, 480
RseI	CAYNNNNRTG	1 cut(s)	303
SaqAI	TTAA	4 cut(s)	168, 200, 869, 990
SatI	GCNGC	3 cut(s)	177, 180, 996
Sau3AI	GATC	8 cut(s)	4, 8, 295, 379, 586, 1018, 1022, 1038
Sau96I	GGNCC	3 cut(s)	79, 84, 787
SchI	GAGTC	5 cut(s)	198, 283, 443, 533, 751
ScrFI	CCNGG	1 cut(s)	99
SetI	ASST	8 cut(s)	178, 292, 481, 844, 850, 988, 997, 1016
SfaNI	GCATC	2 cut(s)	37, 766
SfcI	CTRYAG	2 cut(s)	177, 552
SinI	GGWCC	3 cut(s)	79, 84, 787
SmiMI	CAYNNNNRTG	1 cut(s)	303
SmlI	CTYRAG	2 cut(s)	199, 451
SmoI	CTYRAG	2 cut(s)	199, 451
SphI	GCATGC	1 cut(s)	126
Sse9I	AATT	9 cut(s)	37, 153, 170, 399, 580, 800, 877, 885, 1044
SsiI	CCGC	2 cut(s)	395, 981
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	63
TaqI	TCGA	2 cut(s)	7, 1021
TasI	AATT	9 cut(s)	37, 153, 170, 399, 580, 800, 877, 885, 1044
TfiI	GAWTC	3 cut(s)	359, 500, 712
Tru1I	TTAA	4 cut(s)	168, 200, 869, 990
Tru9I	TTAA	4 cut(s)	168, 200, 869, 990
TseI	GCWGC	3 cut(s)	176, 179, 995
TspDTI	ATGAA	1 cut(s)	1037
TspGWI	ACGGA	1 cut(s)	545
Vha464I	CTTAAG	1 cut(s)	199
VpaK11BI	GGWCC	3 cut(s)	79, 84, 787
XagI	CCTNNNNNAGG	1 cut(s)	317
XapI	RAATTY	3 cut(s)	399, 580, 1044
XceI	RCATGY	1 cut(s)	126
XmnI	GAANNNNTTC	1 cut(s)	363
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.